diff options
| author | Karl Berry <karl@freefriends.org> | 2019-03-27 21:52:37 +0000 |
|---|---|---|
| committer | Karl Berry <karl@freefriends.org> | 2019-03-27 21:52:37 +0000 |
| commit | fdf72eb7326451df89152180380aeea978386658 (patch) | |
| tree | 6983b68017bc6f7904a1028d6c68bd6e48849f86 | |
| parent | 86535c1940974894e18a8071d47c375318640a9f (diff) | |
zootaxa-bst (27mar19)
git-svn-id: svn://tug.org/texlive/trunk@50619 c570f23f-e606-0410-a88d-b1316a301751
| -rw-r--r-- | Master/texmf-dist/bibtex/bst/zootaxa-bst/zootaxa.bst | 1145 | ||||
| -rw-r--r-- | Master/texmf-dist/doc/bibtex/zootaxa-bst/CHANGES.md | 7 | ||||
| -rw-r--r-- | Master/texmf-dist/doc/bibtex/zootaxa-bst/LICENSE | 415 | ||||
| -rw-r--r-- | Master/texmf-dist/doc/bibtex/zootaxa-bst/README.md | 48 | ||||
| -rw-r--r-- | Master/texmf-dist/doc/bibtex/zootaxa-bst/example-refs.bib | 961 | ||||
| -rw-r--r-- | Master/texmf-dist/doc/bibtex/zootaxa-bst/example.pdf | bin | 0 -> 114795 bytes | |||
| -rw-r--r-- | Master/texmf-dist/doc/bibtex/zootaxa-bst/example.tex | 72 | ||||
| -rwxr-xr-x | Master/tlpkg/bin/tlpkg-ctan-check | 2 | ||||
| -rw-r--r-- | Master/tlpkg/tlpsrc/collection-bibtexextra.tlpsrc | 1 | ||||
| -rw-r--r-- | Master/tlpkg/tlpsrc/zootaxa-bst.tlpsrc | 0 |
10 files changed, 2650 insertions, 1 deletions
diff --git a/Master/texmf-dist/bibtex/bst/zootaxa-bst/zootaxa.bst b/Master/texmf-dist/bibtex/bst/zootaxa-bst/zootaxa.bst new file mode 100644 index 00000000000..4585c050e8d --- /dev/null +++ b/Master/texmf-dist/bibtex/bst/zootaxa-bst/zootaxa.bst @@ -0,0 +1,1145 @@ +%% zootaxa.bst: BibTeX style file for the journal Zootaxa. +% +% Author: Gustavo A. Ballen +% Maintainer: Gustavo A. Ballen +% First-written: <2019-mar-25> +% Version: 1.0 +% Keywords: TeX, BibTeX, bst, zootaxa +% URL: https://github.com/gaballench/zootaxa-bst + +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% The file zootaxa.bst file is a fork of apa.bst with further modification. +% It is said to be further a modification of apalike.bst +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% BibTeX `apalike' bibliography style (24-Jan-88 version) +% Adapted from the `alpha' style, version 0.99a; for BibTeX version 0.99a. +% Copyright (C) 1988, all rights reserved. +% Copying of this file is allowed, provided that if you make any changes at all +% you name it something other than `apalike.bst'. +% This restriction helps ensure that all copies are identical. +% Differences between this style and `alpha' are generally heralded by a `%'. +% The file btxbst.doc has the documentation for alpha.bst. +% +% This style should be used with the `apalike' LaTeX style (apalike.sty). +% \cite's come out like "(Jones, 1986)" in the text but there are no labels +% in the bibliography, and something like "(1986)" comes out immediately +% after the author. Author (and editor) names appear as last name, comma, +% initials. A `year' field is required for every entry, and so is either +% an author (or in some cases, an editor) field or a key field. +% +% Editorial note: +% Many journals require a style like `apalike', but I strongly, strongly, +% strongly recommend that you not use it if you have a choice---use something +% like `plain' instead. Mary-Claire van Leunen (A Handbook for Scholars, +% Knopf, 1979) argues convincingly that a style like `plain' encourages better +% writing than one like `apalike'. Furthermore the strongest arguments for +% using an author-date style like `apalike'---that it's "the most practical" +% (The Chicago Manual of Style, University of Chicago Press, thirteenth +% edition, 1982, pages 400--401)---fall flat on their face with the new +% computer-typesetting technology. For instance page 401 anachronistically +% states "The chief disadvantage of [a style like `plain'] is that additions +% or deletions cannot be made after the manuscript is typed without changing +% numbers in both text references and list." LaTeX sidesteps the disadvantage. +% +% History: +% 15-sep-86 (SK,OP) Original version, by Susan King and Oren Patashnik. +% 10-nov-86 (OP) Truncated the sort.key$ string to the correct length +% in bib.sort.order to eliminate error message. +% 24-jan-88 (OP) Updated for BibTeX version 0.99a, from alpha.bst 0.99a; +% apalike now sorts by author, then year, then title; +% THIS `apalike' VERSION DOES NOT WORK WITH BIBTEX 0.98i. +% 25-mar-19 (GAB) Forked from texlive's apa.bst for fitting to zootaxa +% reference rules. + +ENTRY + { address + author + booktitle + chapter + edition + editor + howpublished + institution + journal + key + note + number + organization + pages + publisher + school + series + title + type + url + urldate + volume + year + } + {} + { label extra.label sort.label } + +INTEGERS { output.state before.all mid.sentence after.sentence after.block } + +FUNCTION {init.state.consts} +{ #0 'before.all := + #1 'mid.sentence := + #2 'after.sentence := + #3 'after.block := +} + +STRINGS { s t } + +FUNCTION {output.nonnull} +{ 's := + output.state mid.sentence = + { ", " * write$ } + { output.state after.block = + { add.period$ write$ + newline$ + "\newblock " write$ + } + { output.state before.all = + 'write$ + { add.period$ " " * write$ } + if$ + } + if$ + mid.sentence 'output.state := + } + if$ + s +} + +FUNCTION {output} +{ duplicate$ empty$ + 'pop$ + 'output.nonnull + if$ +} + +FUNCTION {output.check} +{ 't := + duplicate$ empty$ + { pop$ "empty " t * " in " * cite$ * warning$ } + 'output.nonnull + if$ +} + +% apalike needs this function because +% the year has special punctuation; +% apalike ignores the month +FUNCTION {output.year.check} +{ year empty$ + { "empty year in " cite$ * warning$ } + { write$ + " (" year * extra.label * ")" * + mid.sentence 'output.state := + } + if$ +} + +FUNCTION {output.url} +{ year empty$ + { "empty url in " cite$ * warning$ } + { write$ + " \textit{Available from:} " url * extra.label * + mid.sentence 'output.state := + } + if$ +} + +FUNCTION {output.urldate} +{ year empty$ + { "empty urldate in " cite$ * warning$ } + { write$ + " (" urldate * extra.label * ")" * + mid.sentence 'output.state := + } + if$ +} + +FUNCTION {output.bibitem} +{ newline$ + "\bibitem[" write$ + label write$ + "]{" write$ + cite$ write$ + "}" write$ + newline$ + "" + before.all 'output.state := +} + +FUNCTION {fin.entry} +{ add.period$ + write$ + newline$ +} + +FUNCTION {new.block} +{ output.state before.all = + 'skip$ + { after.block 'output.state := } + if$ +} + +FUNCTION {add.blank} % added this one from linquire2.bst +{ " " * before.all 'output.state := +} + +FUNCTION {new.sentence} +{ output.state after.block = + 'skip$ + { output.state before.all = + 'skip$ + { after.sentence 'output.state := } + if$ + } + if$ +} + +FUNCTION {not} +{ { #0 } + { #1 } + if$ +} + +FUNCTION {and} +{ 'skip$ + { pop$ #0 } + if$ +} + +FUNCTION {or} +{ { pop$ #1 } + 'skip$ + if$ +} + +FUNCTION {new.block.checkb} +{ empty$ + swap$ empty$ + and + 'skip$ + 'new.block + if$ +} + +FUNCTION {field.or.null} +{ duplicate$ empty$ + { pop$ "" } + 'skip$ + if$ +} + +FUNCTION {emphasize} +{ duplicate$ empty$ + { pop$ "" } + { "{\em " swap$ * "}" * } + if$ +} + +INTEGERS { nameptr namesleft numnames } + +FUNCTION {format.names} +{ 's := + #1 'nameptr := + s num.names$ 'numnames := + numnames 'namesleft := + { namesleft #0 > } + { s nameptr "{vv~}{ll}{, jj}{, f{.}.}" format.name$ 't := % {, f. separates lastname and initial} + nameptr #1 > + { namesleft #1 > + { ", " * t * } + { numnames #2 > + { "," * } + 'skip$ + if$ + t "others" = + { " \textit{et~al.}" * } + { " \& " * t * } + if$ + } + if$ + } + 't + if$ + nameptr #1 + 'nameptr := + namesleft #1 - 'namesleft := + } + while$ +} + +FUNCTION {format.authors} +{ author empty$ + { "" } + { author format.names } + if$ +} + +FUNCTION {format.key} % this function is just for apalike +{ empty$ + { key field.or.null } + { "" } + if$ +} + +FUNCTION {format.editors} +{ editor empty$ + { "" } + { editor format.names + editor num.names$ #1 > + { " (Eds)" * } + { " (Ed)" * } + if$ + } + if$ +} + +FUNCTION {format.title} +{ title empty$ + { "" } + { title "t" change.case$ } + if$ +} + +FUNCTION {n.dashify} +{ 't := + "" + { t empty$ not } + { t #1 #1 substring$ "-" = + { t #1 #2 substring$ "--" = not + { "--" * + t #2 global.max$ substring$ 't := + } + { { t #1 #1 substring$ "-" = } + { "-" * + t #2 global.max$ substring$ 't := + } + while$ + } + if$ + } + { t #1 #1 substring$ * + t #2 global.max$ substring$ 't := + } + if$ + } + while$ +} + +FUNCTION {format.btitle} +{ title emphasize +} + +FUNCTION {tie.or.space.connect} +{ duplicate$ text.length$ #3 < + { "~" } + { " " } + if$ + swap$ * * +} + +FUNCTION {either.or.check} +{ empty$ + 'pop$ + { "can't use both " swap$ * " fields in " * cite$ * warning$ } + if$ +} + +FUNCTION {format.bvolume} +{ volume empty$ + { "" } + { "volume" volume tie.or.space.connect + series empty$ + 'skip$ + { " of " * series emphasize * } + if$ + "volume and number" number either.or.check + } + if$ +} + +FUNCTION {format.number.series} +{ volume empty$ + { number empty$ + { series field.or.null } + { output.state mid.sentence = + { "number" } + { "Number" } + if$ + number tie.or.space.connect + series empty$ + { "there's a number but no series in " cite$ * warning$ } + { " in " * series * } + if$ + } + if$ + } + { "" } + if$ +} + +FUNCTION {format.edition} +{ edition empty$ + { "" } + { output.state mid.sentence = + { edition "l" change.case$ " edition" * } + { edition "t" change.case$ " edition" * } + if$ + } + if$ +} + +INTEGERS { multiresult } + +FUNCTION {multi.page.check} +{ 't := + #0 'multiresult := + { multiresult not + t empty$ not + and + } + { t #1 #1 substring$ + duplicate$ "-" = + swap$ duplicate$ "," = + swap$ "+" = + or or + { #1 'multiresult := } + { t #2 global.max$ substring$ 't := } + if$ + } + while$ + multiresult +} + +FUNCTION {format.pages} +{ pages empty$ + { "" } + { pages multi.page.check + { "pp." pages n.dashify tie.or.space.connect } + { "p." pages tie.or.space.connect } + if$ + } + if$ +} + +FUNCTION {format.vol.num.pages} +{ volume field.or.null + number empty$ + 'skip$ + { "(" number * ")" * * + volume empty$ + { "there's a number but no volume in " cite$ * warning$ } + 'skip$ + if$ + } + if$ + pages empty$ + 'skip$ + { duplicate$ empty$ + { pop$ format.pages } + { ", " * pages n.dashify * } % change the comma to : back if needed + if$ + } + if$ +} + +FUNCTION {format.chapter.pages} +{ chapter empty$ + 'format.pages + { type empty$ + { "chapter" } + { type "l" change.case$ } + if$ + chapter tie.or.space.connect + pages empty$ + 'skip$ + { ", " * format.pages * } + if$ + } + if$ +} + +FUNCTION {format.in.ed.booktitle} +{ booktitle empty$ + { "" } + { editor empty$ + { "\textit{In:} " booktitle emphasize * } + { "\textit{In:} " format.editors * ", " * booktitle emphasize * } + if$ + } + if$ +} + +FUNCTION {format.thesis.type} +{ type empty$ + 'skip$ + { pop$ + type "t" change.case$ + } + if$ +} + +FUNCTION {format.tr.number} +{ type empty$ + { "Technical Report" } + 'type + if$ + number empty$ + { "t" change.case$ } + { number tie.or.space.connect } + if$ +} + +FUNCTION {format.article.crossref} +{ "In" % this is for apalike + " \cite{" * crossref * "}" * +} + +FUNCTION {format.book.crossref} +{ volume empty$ + { "empty volume in " cite$ * "'s crossref of " * crossref * warning$ + "(\textit{In:}) " + } + { "Volume" volume tie.or.space.connect + " of " * + } + if$ + "\cite{" * crossref * "}" * % this is for apalike +} + +FUNCTION {format.incoll.inproc.crossref} +{ "\textit{In:}" % this is for apalike + " \cite{" * crossref * "}" * +} + +FUNCTION {article} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.title "title" output.check + new.block + crossref missing$ + { journal emphasize "journal" output.check + format.vol.num.pages output + } + { format.article.crossref output.nonnull + format.pages output + } + if$ + new.block + note output + fin.entry +} + +FUNCTION {book} +{ output.bibitem + author empty$ + { format.editors "author and editor" output.check + editor format.key output + } + { format.authors output.nonnull + crossref missing$ + { "author and editor" editor either.or.check } + 'skip$ + if$ + } + if$ + output.year.check % special for apalike + add.blank % was new.block originally + format.btitle "title" output.check + crossref missing$ + { format.bvolume output + new.block + format.number.series output + new.sentence + publisher "publisher" output.check + address output + } + { new.block + format.book.crossref output.nonnull + } + if$ + format.edition output + new.block + note output + fin.entry +} + +FUNCTION {booklet} +{ output.bibitem + format.authors output + author format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.title "title" output.check + new.block + howpublished output + address output + new.block + note output + fin.entry +} + +FUNCTION {inbook} +{ output.bibitem + author empty$ + { format.editors "author and editor" output.check + editor format.key output + } + { format.authors output.nonnull + crossref missing$ + { "author and editor" editor either.or.check } + 'skip$ + if$ + } + if$ + output.year.check % special for apalike + add.blank % was new.block originally + format.btitle "title" output.check + crossref missing$ + { format.bvolume output + new.block + format.number.series output + new.sentence + publisher "publisher" output.check + address output + format.chapter.pages "chapter and pages" output.check + } + { new.block + format.book.crossref output.nonnull + format.chapter.pages "chapter and pages" output.check + } + if$ + format.edition output + new.block + note output + fin.entry +} + +FUNCTION {incollection} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.title "title" output.check + new.block + crossref missing$ + { format.in.ed.booktitle "booktitle" output.check + format.bvolume output + format.number.series output + new.sentence + publisher "publisher" output.check + address output + format.edition output + format.chapter.pages output + } + { format.incoll.inproc.crossref output.nonnull + format.chapter.pages output + } + if$ + new.block + note output + fin.entry +} + +FUNCTION {inproceedings} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.title "title" output.check + new.block + crossref missing$ + { format.in.ed.booktitle "booktitle" output.check + format.bvolume output + format.number.series output + address output % for apalike + new.sentence % there's no year + organization output % here so things + publisher output % are simpler + format.pages output + } + { format.incoll.inproc.crossref output.nonnull + format.pages output + } + if$ + new.block + note output + fin.entry +} + +FUNCTION {conference} { inproceedings } + +FUNCTION {manual} +{ output.bibitem + format.authors output + author format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.btitle "title" output.check + organization address new.block.checkb + organization output + address output + format.edition output + new.block + note output + fin.entry +} + +FUNCTION {mastersthesis} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.title "title" output.check + new.block + "Master's thesis" format.thesis.type output.nonnull + school "school" output.check + address output + new.block + note output + fin.entry +} + +FUNCTION {misc} +{ output.bibitem + format.authors output + author format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.title output + new.block + howpublished output + new.block + output.url % this defines the url from the field in reference type misc + new.block + output.urldate + fin.entry +} + +FUNCTION {phdthesis} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.btitle "title" output.check + new.block + "PhD thesis" format.thesis.type output.nonnull + school "school" output.check + address output + new.block + note output + fin.entry +} + +FUNCTION {proceedings} +{ output.bibitem + format.editors output + editor format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.btitle "title" output.check + format.bvolume output + format.number.series output + address output % for apalike + new.sentence % we always output + organization output % a nonempty organization + publisher output % here + new.block + note output + fin.entry +} + +FUNCTION {techreport} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.title "title" output.check + new.block + format.tr.number output.nonnull + institution "institution" output.check + address output + new.block + note output + fin.entry +} + +FUNCTION {unpublished} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + add.blank % was new.block originally + format.title "title" output.check + new.block + note "note" output.check + fin.entry +} + +FUNCTION {default.type} { misc } + +MACRO {jan} {"January"} + +MACRO {feb} {"February"} + +MACRO {mar} {"March"} + +MACRO {apr} {"April"} + +MACRO {may} {"May"} + +MACRO {jun} {"June"} + +MACRO {jul} {"July"} + +MACRO {aug} {"August"} + +MACRO {sep} {"September"} + +MACRO {oct} {"October"} + +MACRO {nov} {"November"} + +MACRO {dec} {"December"} + +MACRO {acmcs} {"ACM Computing Surveys"} + +MACRO {acta} {"Acta Informatica"} + +MACRO {cacm} {"Communications of the ACM"} + +MACRO {ibmjrd} {"IBM Journal of Research and Development"} + +MACRO {ibmsj} {"IBM Systems Journal"} + +MACRO {ieeese} {"IEEE Transactions on Software Engineering"} + +MACRO {ieeetc} {"IEEE Transactions on Computers"} + +MACRO {ieeetcad} + {"IEEE Transactions on Computer-Aided Design of Integrated Circuits"} + +MACRO {ipl} {"Information Processing Letters"} + +MACRO {jacm} {"Journal of the ACM"} + +MACRO {jcss} {"Journal of Computer and System Sciences"} + +MACRO {scp} {"Science of Computer Programming"} + +MACRO {sicomp} {"SIAM Journal on Computing"} + +MACRO {tocs} {"ACM Transactions on Computer Systems"} + +MACRO {tods} {"ACM Transactions on Database Systems"} + +MACRO {tog} {"ACM Transactions on Graphics"} + +MACRO {toms} {"ACM Transactions on Mathematical Software"} + +MACRO {toois} {"ACM Transactions on Office Information Systems"} + +MACRO {toplas} {"ACM Transactions on Programming Languages and Systems"} + +MACRO {tcs} {"Theoretical Computer Science"} + +READ + +FUNCTION {sortify} +{ purify$ + "l" change.case$ +} + +INTEGERS { len } + +FUNCTION {chop.word} +{ 's := + 'len := + s #1 len substring$ = + { s len #1 + global.max$ substring$ } + 's + if$ +} + +% There are three apalike cases: one person (Jones), +% two (Jones and de~Bruijn), and more (Jones et~al.). +% This function is much like format.crossref.editors. +% +FUNCTION {format.lab.names} +{ 's := + s #1 "{vv~}{ll}" format.name$ + s num.names$ duplicate$ + #2 > + { pop$ " \textit{et~al.}" * } + { #2 < + 'skip$ + { s #2 "{ff }{vv }{ll}{ jj}" format.name$ "others" = + { " \textit{et~al.}" * } + { " \& " * s #2 "{vv~}{ll}" format.name$ * } + if$ + } + if$ + } + if$ +} + +FUNCTION {author.key.label} +{ author empty$ + { key empty$ + { cite$ #1 #3 substring$ } + 'key % apalike uses the whole key + if$ + } + { author format.lab.names } + if$ +} + +FUNCTION {author.editor.key.label} +{ author empty$ + { editor empty$ + { key empty$ + { cite$ #1 #3 substring$ } + 'key % apalike uses the whole key + if$ + } + { editor format.lab.names } + if$ + } + { author format.lab.names } + if$ +} + +FUNCTION {editor.key.label} +{ editor empty$ + { key empty$ + { cite$ #1 #3 substring$ } + 'key % apalike uses the whole key, no organization + if$ + } + { editor format.lab.names } + if$ +} + +FUNCTION {calc.label} % this function came from ASTRON.BST (ARR) +{ type$ "book" = + type$ "inbook" = + or + 'author.editor.key.label + { type$ "proceedings" = + 'editor.key.label % apalike ignores organization + 'author.key.label % for labeling and sorting + if$ + } + if$ + "\protect\astroncite{" swap$ * "}{" % these three lines are + * % for apalike, which + year field.or.null purify$ #-1 #4 substring$ % uses all four digits + * % the mathing closing "}" comes in at the reverse.pass + 'label := +} + +FUNCTION {sort.format.names} +{ 's := + #1 'nameptr := + "" + s num.names$ 'numnames := + numnames 'namesleft := + { namesleft #0 > } + { nameptr #1 > + { " " * } + 'skip$ + if$ % apalike uses initials + s nameptr "{vv{ } }{ll{ }}{ f{ }}{ jj{ }}" format.name$ 't := % <= here + nameptr numnames = t "others" = and + { "\textit{et al.}" * } + { t sortify * } + if$ + nameptr #1 + 'nameptr := + namesleft #1 - 'namesleft := + } + while$ +} + +FUNCTION {sort.format.title} +{ 't := + "A " #2 + "An " #3 + "The " #4 t chop.word + chop.word + chop.word + sortify + #1 global.max$ substring$ +} + +FUNCTION {author.sort} +{ author empty$ + { key empty$ + { "to sort, need author or key in " cite$ * warning$ + "" + } + { key sortify } + if$ + } + { author sort.format.names } + if$ +} + +FUNCTION {author.editor.sort} +{ author empty$ + { editor empty$ + { key empty$ + { "to sort, need author, editor, or key in " cite$ * warning$ + "" + } + { key sortify } + if$ + } + { editor sort.format.names } + if$ + } + { author sort.format.names } + if$ +} + +FUNCTION {editor.sort} +{ editor empty$ + { key empty$ + { "to sort, need editor or key in " cite$ * warning$ + "" + } + { key sortify } + if$ + } + { editor sort.format.names } + if$ +} + +% apalike uses two sorting passes; the first one sets the +% labels so that the `a's, `b's, etc. can be computed; +% the second pass puts the references in "correct" order. +% The presort function is for the first pass. It computes +% label, sort.label, and title, and then concatenates. +FUNCTION {presort} +{ calc.label + label sortify + " " + * + type$ "book" = + type$ "inbook" = + or + 'author.editor.sort + { type$ "proceedings" = + 'editor.sort + 'author.sort + if$ + } + if$ + #1 entry.max$ substring$ % for + 'sort.label := % apalike + sort.label % style + * + " " + * + title field.or.null + sort.format.title + * + #1 entry.max$ substring$ + 'sort.key$ := +} + +ITERATE {presort} + +SORT % by label, sort.label, title---for final label calculation + +STRINGS { last.label next.extra } % apalike labels are only for the text; + +INTEGERS { last.extra.num } % there are none in the bibliography + +FUNCTION {initialize.extra.label.stuff} % and hence there is no `longest.label' +{ #0 int.to.chr$ 'last.label := + "" 'next.extra := + #0 'last.extra.num := +} + +FUNCTION {forward.pass} +{ last.label label = + { last.extra.num #1 + 'last.extra.num := + last.extra.num int.to.chr$ 'extra.label := + } + { "a" chr.to.int$ 'last.extra.num := + "" 'extra.label := + label 'last.label := + } + if$ +} + +FUNCTION {reverse.pass} % this function came from ASTRON.BST (ARR) +{ next.extra "b" = + { "a" 'extra.label := } + 'skip$ + if$ + label extra.label * "}" * 'label := + extra.label 'next.extra := +} + +EXECUTE {initialize.extra.label.stuff} + +ITERATE {forward.pass} + +REVERSE {reverse.pass} + +% Now that the label is right we sort for real, +% on sort.label then year then title. This is +% for the second sorting pass. +FUNCTION {bib.sort.order} +{ sort.label + " " + * + year field.or.null sortify + * + " " + * + title field.or.null + sort.format.title + * + #1 entry.max$ substring$ + 'sort.key$ := +} + +ITERATE {bib.sort.order} + +SORT % by sort.label, year, title---giving final bibliography order + +FUNCTION {begin.bib} +{ preamble$ empty$ % no \etalchar in apalike + 'skip$ + { preamble$ write$ newline$ } + if$ + "\begin{thebibliography}{}" write$ newline$ % no labels in apalike +} + +EXECUTE {begin.bib} + +EXECUTE {init.state.consts} + +ITERATE {call.type$} + +FUNCTION {end.bib} +{ newline$ + "\end{thebibliography}" write$ newline$ +} + +EXECUTE {end.bib} diff --git a/Master/texmf-dist/doc/bibtex/zootaxa-bst/CHANGES.md b/Master/texmf-dist/doc/bibtex/zootaxa-bst/CHANGES.md new file mode 100644 index 00000000000..b8391bb62be --- /dev/null +++ b/Master/texmf-dist/doc/bibtex/zootaxa-bst/CHANGES.md @@ -0,0 +1,7 @@ +Changelog +=============== + + +## Ver. 1.0 (2019-03-25) + +* Initial version, a fork from apa.bst with own functions for managing some specific aspects of the literature cited required by zootaxa. Checked against the [instructions for authors](https://www.mapress.com/j/zt/pages/view/forauthors). diff --git a/Master/texmf-dist/doc/bibtex/zootaxa-bst/LICENSE b/Master/texmf-dist/doc/bibtex/zootaxa-bst/LICENSE new file mode 100644 index 00000000000..058caea9cec --- /dev/null +++ b/Master/texmf-dist/doc/bibtex/zootaxa-bst/LICENSE @@ -0,0 +1,415 @@ +The LaTeX Project Public License +=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- + +LPPL Version 1.3c 2008-05-04 + +Copyright 1999 2002-2008 LaTeX3 Project + Everyone is allowed to distribute verbatim copies of this + license document, but modification of it is not allowed. + + +PREAMBLE +======== + +The LaTeX Project Public License (LPPL) is the primary license under +which the LaTeX kernel and the base LaTeX packages are distributed. + +You may use this license for any work of which you hold the copyright +and which you wish to distribute. 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\ No newline at end of file diff --git a/Master/texmf-dist/doc/bibtex/zootaxa-bst/README.md b/Master/texmf-dist/doc/bibtex/zootaxa-bst/README.md new file mode 100644 index 00000000000..7ca5fa7fd12 --- /dev/null +++ b/Master/texmf-dist/doc/bibtex/zootaxa-bst/README.md @@ -0,0 +1,48 @@ +# zootaxa-bst +A .bst reference style for LaTeX + +## Introduction + +This package provides a bst reference style file for the journal zootaxa that publishes contributions in zoology and classification. This is a fork of `apa.bst` as provided by texlive since this style file resembled the most Zootaxa's own style. Further modifications were made to the code in order to generate in-text citations and bibliography sections appropriately. Although I have not tested the style with tools other than the texlive distribution under linux, it is expected to work on any platform and distribution that the apa.bst file does. Please see below under 'Bug reports and contributing' if something is not behaving as expected. + +## Download + +This package is being submited to CTAN and will eventually be available there and probably bundled together with distributions such as texlive. In the meantime, it can be downloaded from github (https://github.com/gaballench/zootaxa-bst/) where we will also find the development version of the package. + +## Installation + +There are two ways: + +- Put the .bst file where latex can find it. +- Put the .bst file in the same directory as your tex file so that it can be found during compilation. This method is preferred when you need the style file just for a single project and don't expect to needed later. + +## Usage + +Please note that three lines are necessary for compiling with this reference style: + +``` +\documentclass{article} + +\usepackage{natbib} +... +... +... +\bibliographystyle{zootaxa} +\bibliography{example-refs} + +\end{document} +``` + +The command `usepackage` activates the `natbib` package necessary for managing references. The command `bibliographystyle` will tell the system to use `zootaxa.bst`. The command `bibliography` points the `.bib` file. Please note that the fact that we are not indicating paths indicates that 1) the files are in the path (in the case of the package if it was installed where the system can find it), or the in working directory where the remaining files are found (e.g., the bibliography file). + +## Author(s) and maintainer(s) + +Currently only Gustavo A. Ballen is involved in the development of this package. + +## Bug reports and contributing + +Please feel free to send a pull request through github for improving the package. Also, you can send bug reports and suggestions for improvement; please ensure that you provide a reproducible instance along with your bug report (e.g., both the .tex file and the .bib file that I can compile so that I can better understand what is going on). + +## License + +This package is released under the LaTeX Project Public License in order to follow the license of the apa package on CTAN. See https://ctan.org/license/lppl1.3c for details and the file `LICENSE` for details. diff --git a/Master/texmf-dist/doc/bibtex/zootaxa-bst/example-refs.bib b/Master/texmf-dist/doc/bibtex/zootaxa-bst/example-refs.bib new file mode 100644 index 00000000000..b8a5d1154f4 --- /dev/null +++ b/Master/texmf-dist/doc/bibtex/zootaxa-bst/example-refs.bib @@ -0,0 +1,961 @@ +@article{Arratia2018, +author = {Arratia, Gloria and Gonz{\'{a}}lez-Rodr{\'{i}}guez, Katia A. and Hern{\'{a}}ndez-Guerrero, Citlalli}, +doi = {10.5194/fr-21-93-2018}, +issn = {21930074}, +journal = {Fossil Record}, +number = {1}, +pages = {93--107}, +title = {{A new Pachyrhizodontid Fish (Actinopterygii, Teleostei) from the Muhi Quarry (Albian-Cenomanian), Hidalgo, Mexico}}, +volume = {21}, +year = {2018} +} +@book{Agassiz1833II, +author = {Agassiz, Louis}, +pages = {1--336}, +title = {{Recherches sur les Poissons Fossiles. Tome II}}, +year = {1833} +} +@article{Doiuchi2005, +author = {Doiuchi, Ryu and Nakabo, Tetsuji}, +doi = {10.1007/s10228-004-0263-1}, +issn = {13418998}, +journal = {Ichthyological Research}, +keywords = {Sphyraena,Sphyraena iburiensis sp. nov.,Sphyraena obtusata group,Sphyraenidae}, +pages = {132--151}, +title = {{The \textit{Sphyraena obtusata} group (Perciformes: Sphyraenidae) with a description of a new species from southern Japan}}, +volume = {52}, +year = {2005} +} +@article{Mainwaring1978, +author = {Mainwaring, A. J.}, +pages = {162}, +title = {{Anatomical and Systematic review of the Pachycormidae, a family of Mesozoic fossil fishes}}, +year = {1978} +} +@article{Sanchez-Villagra2004, +author = {S{\'{a}}nchez-Villagra, Marcelo R and Asher, Robert J and Rinc{\'{o}}n, Ascanio D and Carlini, Alfredo A and Meylan, Peter A and Purdy, Robert W}, +journal = {Special Papers in Palaeontology}, +pages = {105--112}, +title = {{New faunal reports for the cerro La Cruz locality (Lower Miocene), north-eastern Venezuela}}, +volume = {71}, +year = {2004} +} +@article{Betancur2017, +author = {Betancur-R, Ricardo and Wiley, Edward O and Arratia, Gloria and Acero, Arturo and Bailly, Nicolas and Miya, Masaki and Lecointre, Guillaume and Ort{\'{i}}, Guillermo}, +journal = {BMC Evolutionary Biology}, +number = {162}, +pages = {1--40}, +title = {{Phylogenetic classification of bony fishes}}, +volume = {17}, +year = {2017} +} +@article{Fowler1903, +author = {Fowler, Henry W}, +journal = {Proceedings of the Academy of Natural Sciences of Philadelphia}, +number = {1903}, +pages = {743--752}, +title = {{New and little known Mugilidae and Sphyraenidae}}, +volume = {55}, +year = {1903} +} +@article{Brzobohaty2011a, +author = {Brzobohat{\'{y}}, Rostislav and Nolf, Dirk}, +issn = {03746291}, +journal = {Bulletin de l'Institut Royal des Sciences Naturelles de Belqique, Sciences de la Terre}, +keywords = {Bartonian,Eocene,Otoliths,Spain,Teleosts}, +pages = {279--295}, +title = {{Fish otoliths from the middle Eocene (Bartonian) of Yebra de Basa, province of Huesca, Spain}}, +volume = {81}, +year = {2011} +} +@article{Cope1875, +author = {Cope, Edward D}, +journal = {Proceedings of the American Philosophical Society}, +number = {94}, +pages = {361--364}, +title = {{Synopsis of the Vertebrata of the Miocene of Cumberland County , New Jersey}}, +volume = {14}, +year = {1875} +} +@article{Bryant1991, +author = {Bryant, J Daniel}, +journal = {Journal of Vertebrate Paleontology}, +number = {4}, +pages = {472--489}, +title = {{New early Barstovian (Middle Miocene) vertebrates from the upper Torreya Formation, Eastern Florida Panhandle}}, +volume = {11}, +year = {1991} +} +@article{UGENE2012, +author = {Okonechnikov, Konstantin and Golosova, Olga and Fursov, Mikhail and Varlamov, Alexey and Vaskin, Yuri and Efremov, Ivan and {German Grehov}, O. 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W. and Jones, Douglas S. and Moreno, Federico and Zapata, Vladimir and Jaramillo, Carlos A}, +doi = {10.1007/s13358-015-0074-1}, +issn = {1664-2376}, +journal = {Swiss Journal of Palaeontology}, +keywords = {Castilletes Formation,Colombia,Guajira Peninsula,Jimol Formation,Mollusca,Ware Formation,a,colombia,formation {\'{a}},hendy et al,j,jimol formation {\'{a}} castilletes,w,ware formation {\'{a}} mollusca,{\'{a}} guajira peninsula {\'{a}}}, +pages = {1--31}, +publisher = {Springer Basel}, +title = {{Neogene molluscs, shallow marine paleoenvironments, and chronostratigraphy of the Guajira Peninsula, Colombia}}, +url = {http://link.springer.com/10.1007/s13358-015-0074-1}, +year = {2015} +} +@article{Katoh2013, +author = {Katoh, Kazutaka and Standley, Daron M.}, +doi = {10.1093/molbev/mst010}, +isbn = {1537-1719 (Electronic)$\backslash$r0737-4038 (Linking)}, +issn = {07374038}, +journal = {Molecular Biology and Evolution}, +keywords = {metagemone,multiple sequence alignment,parallel processing,progressive alignment,protein structure}, +number = {4}, +pages = {772--780}, +pmid = {23329690}, +title = {{MAFFT multiple sequence alignment software version 7: Improvements in performance and usability}}, +volume = {30}, +year = {2013} +} +@article{Nolf1972, +author = {Nolf, Dirk}, +journal = {Bulletin de la Societe Belge de Geologie, Paleontologie et Hydrologie}, +number = {1-2}, +pages = {95--109}, +title = {{Deuxi{\`{e}}me note sur les T{\'{e}}l{\'{e}}ost{\'{e}}ens des sabens de Lede ({\'{E}}oc{\`{e}}ne Belge)}}, +volume = {81}, +year = {1972} +} +@incollection{Senou2001, +address = {Rome}, +author = {Senou, H}, +booktitle = {The Living Marine Resources of the Western Central Pacific. Volume 6}, +editor = {Carpenter, K E and Niem, V H}, +pages = {3685--3697}, +publisher = {FAO}, +title = {{Sphyraenidae}}, +year = {2001} +} +@article{Gillette1984, +author = {Gillette, David D}, +journal = {Journal of Vertebrate Paleontology}, +number = {2}, +pages = {172--186}, +title = {{A marine ichthyofauna from the Miocene of Panama, and the Tertiary Caribbean Faunal Province}}, +volume = {4}, +year = {1984} +} +@book{Woodward1889, +address = {London}, +author = {Woodward, Arthur Smith}, +pages = {1--474}, +publisher = {Taylor {\&} Francis}, +title = {{Catalogue of the Fossil Fishes in the British Museum (Natural History). Part I}}, +year = {1889} +} +@book{Agassiz, +author = {Agassiz, Louis}, +pages = {1--69}, +title = {{Nomina Systematica Generum Piscium, tam Viventum Quam Fossilum}}, +year = {1846} +} +@book{Agassiz1833III, +author = {Agassiz, Louis}, +pages = {1--390}, +title = {{Recherches sur les Poisson Fossiles. Tome III}}, +year = {1833} +} +@article{Ray1968, +author = {Ray, Clayton E and Wetmore, Alexander and Dunkle, David H and Drez, Paul}, +journal = {Smithsonian Miscellaneous Collections}, +number = {3}, +pages = {1--25}, +title = {{Fossil vertebrates from the marine Pleistocene of southeastern Virginia}}, +volume = {153}, +year = {1968} +} +@article{Quillevere2018, +author = {Quill{\'{e}}v{\'{e}}r{\'{e}}, Fr{\'{e}}d{\'{e}}ric and Koskeridou, Efterpi and Corn{\'{e}}e, Jean-Jacques and Moissette, Pierre and Girone, Angela and Agiadi, Konstantina}, +doi = {10.1016/j.quascirev.2018.07.037}, +issn = {02773791}, +journal = {Quaternary Science Reviews}, +pages = {80--99}, +title = {{Pleistocene marine fish invasions and paleoenvironmental reconstructions in the eastern Mediterranean}}, +volume = {196}, +year = {2018} +} +@article{Schultz2010, +author = {Schultz, Ortwin and Brzobohat{\'{y}}, Rostislav and Kroupa, Oldrich}, +journal = {Annalen des Naturhistorischen Museums in Wien, Serie A}, +keywords = {badenian,central paratethys,chondrichthyes,osteichthyes,pisces}, +pages = {489--506}, +title = {{Fish teeth from the Middle Miocene of Kienberg at Mikulov, Czech Republic, Vienna Basin}}, +volume = {112}, +year = {2010} +} +@article{Diaz-Franco2009, +author = {D{\'{i}}az-Franco, Stephen and Rojas-Consuegra, Reinaldo}, +journal = {Solenodon}, +keywords = {fossil,new record,perciformes,sphyraena,sphyraenidae,tertiary}, +pages = {124--129}, +title = {{Dientes f{\'{o}}siles de \textit{Sphyraena} (Perciformes: Sphyraenidae) en el Terciario de Cuba Occidental}}, +volume = {8}, +year = {2009} +} +@incollection{Bohm1924, +address = {Berlin}, +author = {B{\"{o}}hm, J}, +booktitle = {Die Diamantenw{\"{u}}ste Sudwestafrikasfrikas. Vol II}, +editor = {Kaiser, E}, +pages = {55--87}, +title = {{Ueher terti{\^{a}}re Versteinerungen von den hogenfelser Diamantfeldern}}, +year = {1926} +} +@article{Westgate1984, +author = {Westgate, James W}, +journal = {Journal of Vertebrate Paleontology}, +number = {4}, +pages = {536--546}, +title = {{Lower vertebrates from the late Eocene Crow Creek local fauna, St. Francis County, Arkansas}}, +volume = {4}, +year = {1984} +} +@article{Gottfried2017, +author = {Gottfried, Michael D and Samonds, Karen E and Ostrowski, Summer A and Andrianavalona, Tsiory Harimalala and Ramihangihajason, Tolotra Niaina}, +doi = {10.1371/journal.pone.0176553}, +isbn = {1111111111}, +issn = {19326203}, +journal = {PLoS ONE}, +number = {5}, +pages = {1--9}, +pmid = {28542538}, +title = {{New evidence indicates the presence of Barracuda (Sphyraenidae) and supports a tropical marine environment in the Miocene of Madagascar}}, +volume = {12}, +year = {2017} +} +@book{ICZN1999, +address = {London}, +author = {ICZN}, +edition = {4th}, +pages = {1--306}, +publisher = {The International Trust for Zoological Nomenclature}, +title = {{International Code of Zoological Nomenclature}}, +year = {1999} +} +@article{Harlan1824, +author = {Harlan, R}, +doi = {10.1080/14786442408644630}, +issn = {1941-5796}, +journal = {Journal fo the Academy of Natural Sciences of Philadelphia}, +pages = {331--338}, +title = {{On a new fossil genus, of the order Enalio Sauri ( of Conybeare): and on a new species of Ichthyosaurus}}, +volume = {3}, +year = {1824} +} +@article{Casier1944a, +author = {Casier, Edgard}, +journal = {Bulletin de l'Institut Royal des Sciences Naturelles de Belgique}, +number = {11}, +pages = {11--15}, +title = {{Contributions {\`{a}} l'{\'{e}}tude des Poissons fossiles de la Belgique. VI. Sur le Sphyraenodus de l'Eocene e sur la pr{\'{e}}sence d'un Sphyraenid{\'{e}} dans le Bruxellien (Lut{\'{e}}tien inf{\'{e}}rieur)}}, +volume = {20}, +year = {1944} +} +@book{Woodward1891, +address = {London}, +author = {Woodward, Arthur Smith}, +pages = {1--567}, +publisher = {Taylor {\&} Francis}, +title = {{Catalogue of the Fossil Fishes in the British Museum (Natural History). Part II}}, +year = {1891} +} +@article{STRINGERGARYL.DepartmentofGe2003, +author = {{STRINGER, GARY L., Department of Ge}}, +doi = {10.1306/8626cfaf-173b-11d7-8645000102c1865d}, +issn = {0149-1423}, +journal = {AAPG Bulletin}, +title = {{Paleoenvironmental Interpretations Based on Vertebrate Fossil Assemblages: An Example of their Utilization in the Gulf Coast}}, +volume = {85}, +year = {2003} +} +@article{Paramo1997, +author = {P{\'{a}}ramo-Fonseca, Mar{\'{i}}a Eur{\'{i}}dice}, +doi = {10.1016/S1251-8050(97)83976-6}, +issn = {12518050}, +journal = {Comptes Rendus de l'Academie de Sciences - Serie IIa: Sciences de la Terre et des Planetes}, +keywords = {Colombia,New taxon,Tselfatioidei,Turonian}, +number = {2}, +pages = {147--150}, +title = {{\textit{Bachea huilensis} nov. gen., nov. sp., premier Tselfatioidei (Teleostei) de Colombie}}, +volume = {325}, +year = {1997} +} +@article{Chapman1935, +author = {Chapman, Frederick}, +journal = {Transactions and Proceedings of the Royal Society of New Zealand}, +pages = {117--121}, +title = {{Descriptions of fossil fish from New Zealand}}, +volume = {64}, +year = {1935} +} +@incollection{DeSylva1986, +address = {Johannesburg}, +author = {de Sylva, Donald P and Williams, F}, +booktitle = {Smiths' Sea Fishes}, +editor = {Smith, M M and Heemstra, P C}, +pages = {721--726}, +publisher = {Macmillan South Africa}, +title = {{Sphyraenidae}}, +year = {1986} +} +@book{Ray2001, +address = {Washington DC}, +author = {Ray, Clayton E and Bohaska, David J}, +booktitle = {Smithsonian Contributions to Paleobiology}, +doi = {10.5479/si.00810266.90.1}, +edition = {Smithsonia}, +editor = {Ray, Clayton E. and Bohaska, David J.}, +issn = {00810266}, +number = {90}, +pages = {1--365}, +title = {{Geology and Paleontology of the Lee Creek Mine, North Carolina, III}}, +url = {http://si-pddr.si.edu/dspace/handle/10088/2006}, +year = {2001} +} +@article{Patterson1993, +author = {Patterson, C.}, +issn = {00074977}, +journal = {Bulletin of Marine Science}, +number = {1}, +pages = {29--59}, +title = {{An overview of the early fossil record of Acanthomorphs}}, +volume = {52}, +year = {1993} +} +@article{BardackSprinkle1969, +author = {Bardack, David and Sprinkle, G}, +journal = {Fieldiana Geology}, +pages = {297--340}, +title = {{Morphology and relationships of saurocephalid fishes}}, +volume = {16}, +year = {1969} +} +@article{Monsch2005, +author = {Monsch, Kenneth A.}, +doi = {10.1017/S0263593300001164}, +isbn = {1755-6929}, +issn = {0263-5933}, +journal = {Transactions of the Royal Society of Edinburgh: Earth Sciences}, +keywords = {1990,and the,co-authors is outdated,fossils,g,has not seen,kemp et al,london clay formation,scombroidei,see e,sometimes,specimens,taxonomic revisions,which the present author}, +number = {November 2016}, +pages = {445--489}, +title = {{Revision of the scombroid fishes from the Cenozoic of England}}, +url = {http://www.journals.cambridge.org/abstract{\_}S0263593300001164}, +volume = {95}, +year = {2005} +} +@book{Agassiz1833IV, +author = {Agassiz, Louis}, +pages = {1--296}, +title = {{Recherches sur les Poissons Fossiles. Tome IV}}, +year = {1833} +} +@article{Moreno2015, +author = {Moreno, Federico and Hendy, A J W and Quiroz, Luis and Hoyos, Natalia and Jones, D S and Zapata, Vladimir and Zapata, S and Ballen, Gustavo A and Cadena, E and C{\'{a}}rdenas, A L and Carrillo-Brice{\~{n}}o, Jorge D and Carrillo, J D and Delgado-Sierra, D and Escobar, J and Mart{\'{i}}nez, J I and Mart{\'{i}}nez, C and Montes, Camilo and Moreno, J and P{\'{e}}rez, N and S{\'{a}}nchez, R. and Su{\'{a}}rez, C and Vallejo-Pareja, M C and Jaramillo, Carlos A}, +doi = {10.1007/s13358-015-0071-4}, +issn = {1664-2376}, +journal = {Swiss Journal of Palaeontology}, +pages = {5--43}, +title = {{Revised stratigraphy of Neogene strata in the Cocinetas Basin, La Guajira, Colombia}}, +volume = {134}, +year = {2015} +} +@misc{Agassiz1833I, +author = {Agassiz, Louis}, +pages = {1--188}, +title = {{Recherches sur les Poissons Fossiles. Tome I}}, +year = {1833} +} +@article{VanderLaan2018, +author = {{Van der Laan}, Richard}, +doi = {10.5852/ejt.2018.466}, +journal = {European Journal of Taxonomy}, +keywords = {1,10,167,2018,466,5852,agnatha,doi,ejt,european journal of taxonomy,family-group names of fossil,fi shes,gnathostomata,https,iczn,nomenclature,org,van der laan r,vertebrata}, +number = {466}, +pages = {1--167}, +title = {{Family-group names of fossil fishes}}, +year = {2018} +} +@article{Meek1884, +author = {Meek, Seth E and Newland, Robert G}, +journal = {Proceedings of the Academy of Natural Sciences of Philadelphia}, +pages = {67--75}, +title = {{A review of the American species of the genus \textit{Sphyraena}}}, +volume = {36}, +year = {1884} +} +@article{Stringer2001, +author = {Stringer, G L and Breard, S Q and Kontrovitz, M}, +journal = {Gulf Coast Association of Geological Societies Transactions}, +pages = {321--328}, +title = {{Biostratigraphy and Paleoecology of Diagnostic Invertebrates and Vertebrates from the Type Locality of the Oligocene Rosefiled Marl Beds, Louisiana}}, +volume = {LI}, +year = {2001} +} +@article{Cope1869, +author = {Cope, E. D.}, +journal = {Transactions of the American Philosophical Society}, +pages = {1--252}, +title = {{Synopsis of the Batrachia and Reptilia of North America. Part I}}, +volume = {14}, +year = {1869} +} +@incollection{Switchenska1968, +author = {Switchenska, Alexandra A}, +booktitle = {Ocherki po Filogenii i Sistematike Iskopaemykh Ryb I Beschelyustnykh}, +pages = {157--161}, +title = {{A new genus from the family Sphyraeniadae from the middle Miocene of Transcaucasia}}, +year = {1968} +} +@book{Agassiz1843, +author = {Agassiz, Louis}, +pages = {1--160}, +title = {{Recherches sur les Poisson Fossiles. Tome V}}, +year = {1843} +} +@article{Vinola2017, +author = {Vi{\~{n}}ola-L{\'{o}}pez, L{\'{a}}zaro William and Rojas-Consuegra, Reinaldo and Jim{\'{e}}nez-V{\'{a}}squez, Osvaldo}, +journal = {Novitates Caribaea}, +keywords = {cuba,dientes f{\'{o}}siles,for the,hispaniola,la espa{\~{n}}ola,mioceno,neogene of cuba and,new records of sphyraena,perciformes,sphyraena sp,sphyraenidae}, +pages = {89--94}, +title = {{Nuevos registros de \textit{Sphyraena} (Perciformes: Sphyraenidae) para el Ne{\'{o}}geno de Cuba y La Espa{\~{n}}ola}}, +volume = {11}, +year = {2017} +} +@book{NCBI2018, +address = {Bethesta}, +author = {NCBI}, +number = {Md}, +publisher = {NCBI}, +title = {{Entrez Programming Utilities Help}}, +url = {http://www.ncbi.nlm.nih.gov/books/NBK25501/}, +year = {2018} +} +@article{Taverne2000, +author = {Taverne, Louis and Chanet, Bruno}, +journal = {Geodiversitas}, +number = {1}, +pages = {23--34}, +title = {{\textit{Faugichthys loryi} n. gen., n. sp. (Teleostei, Ichthyodectiformes) de l'Albien terminal (Cr{\'{e}}tac{\'{e}} inf{\'{e}}rieur marin) du vallon de la Fauge (Is{\`{e}}re, France) et consid{\'{e}}rations sur la phylog{\'{e}}nie des Ichthyodectidae}}, +volume = {22}, +year = {2000} +} +@article{Smith1956, +author = {Smith, J L B}, +journal = {Ichthyological Bulletin of the Department of Ichthyology of Rhodes University}, +pages = {37--46}, +title = {{The fishes of the family Sphyraenidae in the western Indian Ocean}}, +volume = {3}, +year = {1956} +} +@article{Tavora2010, +author = {T{\'{a}}vora, Vladimir de Ara{\'{u}}jo and dos Santos, Andr{\'{e}} Augusto Rodrigues and Ara{\'{u}}jo, Raphael Neto}, +journal = {Boletim do Museu Paraense Emilio Goeldi Ciencias Naturais}, +keywords = {early miocene,fossiliferous localities,pirabas formation}, +number = {2}, +pages = {207--224}, +title = {{Localidades fossil{\'{i}}feras da Forma{\c{c}}{\~{a}}o Pirabas (Mioceno Inferior)}}, +volume = {5}, +year = {2010} +} diff --git a/Master/texmf-dist/doc/bibtex/zootaxa-bst/example.pdf b/Master/texmf-dist/doc/bibtex/zootaxa-bst/example.pdf Binary files differnew file mode 100644 index 00000000000..464eea495a2 --- /dev/null +++ b/Master/texmf-dist/doc/bibtex/zootaxa-bst/example.pdf diff --git a/Master/texmf-dist/doc/bibtex/zootaxa-bst/example.tex b/Master/texmf-dist/doc/bibtex/zootaxa-bst/example.tex new file mode 100644 index 00000000000..52f2d0842cf --- /dev/null +++ b/Master/texmf-dist/doc/bibtex/zootaxa-bst/example.tex @@ -0,0 +1,72 @@ +\documentclass{article} + +\usepackage{natbib} +\usepackage{amsmath} +\usepackage[USenglish]{babel} +\usepackage[utf8]{inputenc} +\usepackage[colorlinks=true,citecolor=blue]{hyperref} + +\author{Gustavo A. Ballen} +\date{\today} +\title{An example manuscript using the \texttt{zootaxa.bst} reference style for Bib\TeX} + +\begin{document} + +\maketitle + +This example uses \texttt{natbib} for handling taxonomic author citations, that behave a bit different from usual bibliographic citations. For details see this blog post: https://gaballench.wordpress.com/2019/03/22/referencing-zoological-name-authorships-in-latex/ + +The usage is pretty simple: Just install \texttt{zootaxa.bst} in a place where \texttt{bibtex} can find it and the compile a couple times with bibtex before compiling with latex. Rinse and repeat if needed. Also, don't forget to create your \texttt{bibtex} \texttt{.bib} bibliography file. Please note that three lines are absolutely necessary for this: + +\begin{verbatim} +\documentclass{article} + +\usepackage{natbib} +... +... +... +\bibliographystyle{zootaxa} +\bibliography{example-refs} + +\end{document} +\end{verbatim} + +The command \texttt{usepackage} activates the \texttt{natbib} package necessary for managing references. The command \texttt{bibliographystyle} will tell the system to use \texttt{zootaxa.bst}. The command \texttt{bibliography} points the \texttt{.bib} file. Please note that the fact that we are not indicating paths indicates that 1) the files are in the path (in the case of the package if it was installed where the system can find it), or the in working directory where the remaining files are found (e.g., the bibliography file). + +The Instructions for Authors on zootaxa's website indicate that: + + + A) Journal paper: + Smith, A. (1999) Title of the paper. Title of the journal in full, volume number, page range. + + B) Book chapter: + Smith, A. \& Smith, B. (2000) Title of the Chapter. In: Smith, A, Smith, B. \& Smith, C. (Eds), Title of Book. Publisher name and location, pp. x–y. + + C) Book: + Smith, A., Smith, B. \& Smith, C. (2001) Title of Book. Publisher name and location, xyz pp. + + D) Internet resources + Author (2002) Title of website, database or other resources, Publisher name and location (if indicated), number of pages (if known). Available from: http://xxx.xxx.xxx/ (Date of access). + +Dissertations resulting from graduate studies and non-serial proceedings of conferences/symposia are to be treated as books and cited as such. Papers not cited must not be listed in the references. + +Also, the separator between authors should the the ampersand (\&), and the abbreviation \textit{et allii} should be italized (\textit{et al.}) + +All of these aspects are handled automatically by \texttt{zootaxa.bst}. For instance, the following text will make use of several references that will be rendered into text according to rules of zootaxa, while generating the references also in the appropriate format. + +\section{Live example} + +Seven genus-group names based on extant taxa have been allocated to the Sphyraenidae: \textit{Agriosphyraena} \citealp{Fowler1903} (type \textit{Esox barracuda}), \textit{Australuzza} \citealp{Whitley1947} (type \textit{Sphyraena novaehollandiae}), \textit{Callosphyraena} \citealp{Smith1956} (type \textit{Sphyraema toxeuma}, junior synonym of \textit{Sphyraena forsteri}), \textit{Indosphyraena} \citealp{Smith1956} (type \textit{Sphyraena africana}), \textit{Sphyraenella} \citealp{Smith1956} (type \textit{Sphyraena flavicauda}), and \textit{Sphyraena} \citealp{Artedi1793} (type \textit{Esox sphyraena}). All of these genera are currently considered synonyms of \textit{Sphyraena}. \cite{Smith1956} elevated all the previous names to subgeneric rank, while \citet{DeSylva1963} deemed such actions unjustified, synonymizing all of these into \textit{Sphyraena} Röse (correct authorship is by Artedi instead). + +\citet{Santini2015} has presented an overview of six fossil species names associated with \textit{Sphyraena}; these authors mentioned \textit{Sphyraena fluctuosa} as a Sphyraenid species based on otolihts; however, such species was originally described by \citet{Nolf1972} in the genus \textit{Platycephalus} (Scorpaeniformes) and subsequently ratified in that genus \citep[e.g.,][]{Huyghebaert1979}. It is herein excluded from the Sphyraenid fossil species. \textit{Sphyraena intermedia} \citealp{Bassani1889} was mentioned also by Santini et al. without noting that another species of extant \textit{Sphyraena} was described with the same specific epithet \citep{Pastore2009}; therefore the latter species by Pastore is herein found to be primary homonym of \textit{Sphyraena intermedia} \citep{Bassani1889}, a fossil species known from the Oligocene of Italy and consequently the name by Pastore is deemed permanently invalid under Article 57.2 of the \citet{ICZN1999}. + +The style handles properly situations just like web pages through the \texttt{@misc} tag \citep[e.g., ][]{EschmeyerWeb} and book sections \citep{Switchenska1968,Bohm1924}. + +\section{Acknowledgements} + +First of all to the open source community for doing all this sharing and modification possible for newer and case-specific uses. I never thought there will be the day that one could prepare a manuscript for zootaxa entirely in \LaTeX and this is a step forward. This late-hours project was indirectly funded by FAPESP through a doctoral scholarship. Many thanks to the Stack Overflow community. This as much of the software projects are speeded up a lot by its existence. + +\bibliographystyle{zootaxa} +\bibliography{example-refs} + +\end{document}
\ No newline at end of file diff --git a/Master/tlpkg/bin/tlpkg-ctan-check b/Master/tlpkg/bin/tlpkg-ctan-check index 8c584ed1b3b..8d71eddfb9d 100755 --- a/Master/tlpkg/bin/tlpkg-ctan-check +++ b/Master/tlpkg/bin/tlpkg-ctan-check @@ -743,7 +743,7 @@ my @TLP_working = qw( yinit-otf york-thesis youngtab yplan ytableau zapfchan zapfding zebra-goodies zed-csp zhlineskip zhlipsum zhnumber zhmetrics zhmetrics-uptex zhspacing - ziffer zlmtt + ziffer zlmtt zootaxa-bst zwgetfdate zwpagelayout zxjafbfont zxjafont zxjatype ); diff --git a/Master/tlpkg/tlpsrc/collection-bibtexextra.tlpsrc b/Master/tlpkg/tlpsrc/collection-bibtexextra.tlpsrc index 5aa6117f65a..819897debe1 100644 --- a/Master/tlpkg/tlpsrc/collection-bibtexextra.tlpsrc +++ b/Master/tlpkg/tlpsrc/collection-bibtexextra.tlpsrc @@ -139,3 +139,4 @@ depend usebib depend vak depend windycity depend xcite +depend zootaxa-bst diff --git a/Master/tlpkg/tlpsrc/zootaxa-bst.tlpsrc b/Master/tlpkg/tlpsrc/zootaxa-bst.tlpsrc new file mode 100644 index 00000000000..e69de29bb2d --- /dev/null +++ b/Master/tlpkg/tlpsrc/zootaxa-bst.tlpsrc |