1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
|
#!/bin/bash
##
## This is file `bibexport.sh',
## generated with the docstrip utility.
##
## The original source files were:
##
## bibexport.dtx (with options: `script')
##
## (c) 2019/03/30 Nicolas Markey <bibexport at markey dot fr>
##
## This work may be distributed and/or modified under the conditions of
## the LaTeX Project Public License, either version 1.3 of this license
## or (at your option) any later version. The latest version of this
## license is in
##
## http://www.latex-project.org/lppl.txt
##
## and version 1.3 or later is part of all distributions of LaTeX version
## 2005/12/01 or later.
##
## This work has the LPPL maintenance status `maintained'.
## The Current Maintainer of this work is Nicolas Markey.
##
## \CharacterTable
## {Upper-case \A\B\C\D\E\F\G\H\I\J\K\L\M\N\O\P\Q\R\S\T\U\V\W\X\Y\Z
## Lower-case \a\b\c\d\e\f\g\h\i\j\k\l\m\n\o\p\q\r\s\t\u\v\w\x\y\z
## Digits \0\1\2\3\4\5\6\7\8\9
## Exclamation \! Double quote \" Hash (number) \#
## Dollar \$ Percent \% Ampersand \&
## Acute accent \' Left paren \( Right paren \)
## Asterisk \* Plus \+ Comma \,
## Minus \- Point \. Solidus \/
## Colon \: Semicolon \; Less than \<
## Equals \= Greater than \> Question mark \?
## Commercial at \@ Left bracket \[ Backslash \\
## Right bracket \] Circumflex \^ Underscore \_
## Grave accent \` Left brace \{ Vertical bar \|
## Right brace \} Tilde \~}
##
function checkversion()
{
kpsewhich expcites.bst > /dev/null ||
echo "-----------
--Warning-- file expcites.bst not found.
-----------"
grep -q $VDATE `kpsewhich expkeys.bst` ||
echo "-----------
--Warning-- the version of the .bst files does not match with that of this script.
-----------"
}
function usage()
{
echo "bibexport: a tool to extract BibTeX entries out of .bib files.
usage: `basename $0` [-h|v|n|c|a|d|s|t] [-b|e|es|ec|o|r file] file...
Basic options:
--------------
-a, --all export the entire .bib files
-o bib, --output-file bib write output to file [default: bibexport.bib]
-ns, --nosave overwrite output file without keeping a copy
-p, --preamble write a preamble at beginning of output
-t, --terse operate silently
-h, --help print this message and exit
-v, --version print version number and exit
Advanced options:
-----------------
-b bst, --bst bst specifies the .bst style file [default: export.bst]
-c, --crossref preserve crossref field [default: no]
-n, --no-crossref remove crossref'd entries [default: no]
-e bib, --extra bib extra .bib file to be used (crossrefs and strings)
-es bib, --extras bib extra .bib file to be used (for strings)
-ec bib, --extrac bib extra .bib file to be used (for crossrefs)
-r bib, --replace bib replace .bib file(s) in the .aux file
-d, --debug create intermediate files but don't run BibTeX";
exit 0;
}
function opttoolate()
{
if [ ! -z "${TOOLATE}" ]; then
echo "No options are allowed after the input files";
exit 0;
fi
}
## Version number
VERSION="3.03";
## Release date
VDATE="2019/03/30";
# ALL is a flag set to 1 when '-a' is given
ALL="";
# FILE will be the main input file(s) (.aux or .bib, depending on '-a')
FILE="";
# EXT is the extension of the input file(s) (.aux, or .bib if '-a')
EXT=".aux";
# EXTRA and EXTRABIB are two copies of the extra files ('-e'), used to
# include crossref'd entries and @string's
EXTRA="";
EXTRABIB="";
# REPLACEBIB ('-r') is set to 1 when the \bibdata of the .aux input file
# must be ignores (then '-e' must be used)
REPLACEBIB="";
# NEWBIB will contain the argument given to -r
NEWBIB="";
# BST is the .bst file to be used (default to export.bst)
BST="export";
# TERSE will be set to '-terse' if '-t' is given
TERSE="";
# NOSAVE if no need to save file before overwriting it
NOSAVE=""
# BANNER is used to turn on or off the preamble informations in the output
BANNER="";
# CREF is the number of citations of crossrefs from which the crossref'd entry
# must be included.
CREF="0";
# SPACE will be either ' ' or ','
SPACE="";
# TOOLATE is used to prevent extra options after the main file
TOOLATE="";
# DEBUG is used to create files but not run BibTeX.
DEBUG="";
ARGS=$@;
if [ $# -eq 0 ]; then
usage;
fi
checkversion;
while [ $# != 0 ]; do
case $1 in
-a|--all)
## - export all entries in the input file(s)
## - the input files are BibTeX files
opttoolate;
EXT=""; SPACE=""; ALL="a";
shift ;;
-b|--bst)
## - specifies the .bst file to use (default to 'export.bst')
opttoolate;
if [ "`dirname $2`" = "." ]; then
DOLLARTWO="`basename $2 .bst`";
else
DOLLARTWO="`dirname $2`/`basename $2 .bst`";
fi
BST="${DOLLARTWO}";
shift 2;;
-d|--debug)
## - debug mode: we create files but do not run bibtex
## - instead, we print what we would have done...
opttoolate;
DEBUG="a";
shift ;;
-e|--extra)
## - extra input files (containing crossrefs or strings)
## - they will be included twice: once before the main file(s)
## (for @string's), once after (for crossrefs). We fool BibTeX
## by naming the first one 'file.bib' and the second one
## 'file.bib.bib', to avoid complaints.
opttoolate;
if [ "`dirname $2`" = "." ]; then
DOLLARTWO="`basename $2 .bib`";
else
DOLLARTWO="`dirname $2`/`basename $2 .bib`";
fi
EXTRA="${EXTRA}${DOLLARTWO},";
EXTRABIB="${EXTRABIB},${DOLLARTWO}.bib";
shift 2;;
-es|--extras)
## - extra input files (containing strings)
## - will be included *before* the main files (hence not suitable
## for crossrefs)
opttoolate;
if [ "`dirname $2`" = "." ]; then
DOLLARTWO="`basename $2 .bib`";
else
DOLLARTWO="`dirname $2`/`basename $2 .bib`";
fi
EXTRA="${EXTRA}${DOLLARTWO},";
shift 2;;
-ec|--extrac)
## - extra input files (containing crossrefs)
## - will be included only *after* the main files (hence not
## suitable for @string's)
opttoolate;
if [ "`dirname $2`" = "." ]; then
DOLLARTWO="`basename $2 .bib`";
else
DOLLARTWO="`dirname $2`/`basename $2 .bib`";
fi
EXTRABIB="${EXTRABIB},${DOLLARTWO}.bib";
shift 2;;
-o|--output-file)
## - name of the output file
## - we force it to end with '.bib'
opttoolate;
if [ "`dirname $2`" = "." ]; then
DOLLARTWO="`basename $2 .bib`";
else
DOLLARTWO="`dirname $2`/`basename $2 .bib`";
fi
OUTPUT="${DOLLARTWO}.bib";
shift 2 ;;
-c|--crossref|--crossrefs|--with-crossref|--with-crossrefs)
## - whether or not to preserve 'crossref' keys.
## - by default, they are removed, but crossref'd entries are
## included.
## - crossrefs are *always* expanded anyway.
opttoolate;
CREF="1" ;
shift ;;
-n|--no-crossref|--without-crossref|--no-crossrefs|--without-crossrefs)
## - to remove crossref'd entries (hence remove 'crossref' keys).
opttoolate;
CREF="20000" ;
shift ;;
-r|--replace)
## - to replace the file(s) given in \bibdata in the .aux file with
## (a) new one(s).
opttoolate;
REPLACEBIB="a";
if [ "`dirname $2`" = "." ]; then
DOLLARTWO="`basename $2 .bib`";
else
DOLLARTWO="`dirname $2`/`basename $2 .bib`";
fi
NEWBIB="${NEWBIB}${DOLLARTWO}.bib,";
shift 2;;
-v|--version)
echo "This is bibexport v${VERSION} (released ${VDATE})"; exit 0;;
-ns|--nosave|--no-save)
NOSAVE="a";
shift ;;
-p|--preamble|--with-preamble)
BANNER="a";
shift ;;
-t|--terse|--silent)
TERSE=" -terse ";
shift ;;
-*)
usage;;
*)
## - list of input files
## - we ensure that no extra option is given later...
TOOLATE="a";
if [ "`dirname $1`" = "." ]; then
DOLLARONE="`basename $1 ${EXT}`";
else
DOLLARONE="`dirname $1`/`basename $1 ${EXT}`";
fi
FILE="${FILE}${SPACE}${DOLLARONE}${EXT}";
if [ -z "${ALL}" ]; then
SPACE=" ";
else
SPACE=",";
fi;
shift;;
esac
done
FINALFILE=${OUTPUT};
if [ ! "${FINALFILE}" ]; then
FINALFILE="bibexport.bib";
fi
TMPFILE="bibexp.`date +%s`";
if [ -z "${EXT}" ]; then ## we export all entries
if [ -z "${EXTRA}" ]; then ## we have no extra files
cat > ${TMPFILE}.aux <<EOF
\citation{*}
\bibdata{${FILE}}
\bibstyle{${BST}}
EOF
else ## we have extra files (e.g. for crossrefs) but want all entries from ${FILE}
## we first extract the keys to be used:
cat > ${TMPFILE}.aux <<EOF
\citation{*}
\bibdata{${FILE}}
\bibstyle{expkeys}
EOF
## This run may generate errors. We redirect the output:
bibtex -min-crossrefs=${CREF} -terse ${TMPFILE} >/dev/null 2>&1;
mv -f ${TMPFILE}.bbl ${TMPFILE}.aux;
## and then prepare the .aux file for exporting:
cat >> ${TMPFILE}.aux <<EOF
\bibdata{${EXTRA}${FILE}${EXTRABIB}}
\bibstyle{${BST}}
EOF
fi
else ## we only export entries listed in the given .aux file:
if [ -z "${REPLACEBIB}" ]; then
cat ${FILE} | sed -e "s/bibstyle{.*}/bibstyle{${BST}}/" > ${TMPFILE}.aux;
else
cat ${FILE} | sed -e "s/bibstyle{.*}/bibstyle{${BST}}/" \
-e "s|bibdata{.*}|bibdata{${EXTRA}${NEWBIB%,}${EXTRABIB}}|" > ${TMPFILE}.aux;
fi
fi
if [ -z "$DEBUG" ]; then
bibtex -min-crossrefs=${CREF} ${TERSE} ${TMPFILE};
if [ -e ${FINALFILE} ] && [ -z "${NOSAVE}" ]; then
mv ${FINALFILE} ${FINALFILE}-save-`date "+%Y.%m.%d:%H.%M.%S"`
fi
echo "" > ${FINALFILE}
else
echo "bibtex -min-crossrefs=${CREF} ${TERSE} ${TMPFILE};"
if [ -e ${FINALFILE} ] && [ -z "${NOSAVE}" ]; then
echo "mv ${FINALFILE} ${FINALFILE}-save-`date \"+%Y.%m.%d:%H.%M.%S\"`"
fi
echo "echo \"\" > ${FINALFILE}"
fi
if [ ! -z "${BANNER}" ]; then
## list of cited entries
if [ -z "$DEBUG" ]; then
sed -i -e "s/\\\bibstyle{.*}/\\\bibstyle{expcites}/" ${TMPFILE}.aux
mv ${TMPFILE}.aux ${TMPFILE}-cites.aux
bibtex -terse -min-crossrefs=${CREF} ${TMPFILE}-cites
echo -ne "@comment{generated using bibexport:\n" >> ${FINALFILE};
echo -ne " creation date:\t`date +\"%c\"`\n" >> ${FINALFILE};
echo -ne " command:\t\t`basename $0` ${ARGS}\n" >> ${FINALFILE};
if [ -z "${EXT}" ]; then
echo -ne " source files:\t\t${FILETAB}\t\t\t${EXTRABIBTAB}\n" >> ${FINALFILE}; \
fi
cat ${TMPFILE}-cites.bbl >> ${FINALFILE};
#echo -ne " bibexport-version:\tv${VERSION} (${VDATE})\n" >> ${FINALFILE};
#echo -ne " bibexport-maintainer:\tNicolas Markey <bibexport(at)markey.fr>\n" >> ${FINALFILE};
sed -i -e "s/}/)/g" ${FINALFILE};
echo -n -e "}\n\n\n" >> ${FINALFILE};
rm -f ${TMPFILE}-cites.bbl ${TMPFILE}-cites.aux ${TMPFILE}-cites.blg
fi
fi
if [ ${CREF} -ne 1 ]; then
if [ -z "$DEBUG" ]; then
egrep -iv '^ *crossref *= *[^,]+,?$' \
${TMPFILE}.bbl >> ${FINALFILE};
else
echo "egrep -iv '^ *crossref *= *[^,]+,?$' ${TMPFILE}.bbl >> ${FINALFILE};"
fi
else
if [ -z "$DEBUG" ]; then
cat ${TMPFILE}.bbl >> ${FINALFILE};
else
echo "cat ${TMPFILE}.bbl >> ${FINALFILE};"
fi
fi
if [ -z "$DEBUG" ]; then
rm -f ${TMPFILE}.bbl ${TMPFILE}.aux ${TMPFILE}.blg;
else
echo "rm -f ${TMPFILE}.bbl ${TMPFILE}.aux ${TMPFILE}.blg";
fi
##
##
## End of file `bibexport.sh'.
|
