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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%% %%%%%
%%%%% Ciliate macronuclear genetic code definitions %%%%%
%%%%% %%%%%
%%%%% Only exchanges compared to the standard code must be defined. %%%%%
%%%%% %%%%%
%%%%% (The last codon of the list is used for backtranslations %%%%%
%%%%% from protein to DNA sequences---therefore the wobbles) %%%%%
%%%%% %%%%%
%%%%% %%%%%
%%%%% Activate these definitions for your alignment by the following %%%%%
%%%%% command in the texshade environment: %%%%%
%%%%% %%%%%
%%%%% \geneticcode{ciliate} %%%%%
%%%%% %%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\codon{Q}{TAA,TAG,UAA,UAG,YAR}
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