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\documentclass[a4paper,12pt,openright,twoside]{adfathesis}
\usepackage{dcolumn}
\usepackage{graphicx}
%-----------------------------------------------------------------------
% Harvard citation style control.
%-----------------------------------------------------------------------
\citationstyle{agsm}
\renewcommand{\harvardand}{and}
%-----------------------------------------------------------------------
% Setup Decimal column alignment (using dcolumn).
%-----------------------------------------------------------------------
\newcolumntype{d}[1]{D{.}{\cdot}{#1}}
%-----------------------------------------------------------------------
% Control included chapters here
%-----------------------------------------------------------------------
\includeonly{chapter2}
\title{A fascinating thesis}
\authornameonly{Fred Nerk}
\author{\Authornameonly \\ B.Sc.}
\copyrightfalse % Set true to get copyright page.
\thesistype{Doctor of Philosophy} % Default value.
\figurespagetrue % Set false to avoid list of figures.
\tablespagefalse % Set true to get list of tables.
\begin{document}
\beforepreface
% \declaration % Declaration page.
\prefacesection{Abstract}
This thesis tells you all you need to know about...
\prefaceseciton{Acknowledgements}
I would like to thank...
\afterpreface
%-----------------------------------------------------------------------
% Begin thesis: use \include for each chapter as a separate file.
%-----------------------------------------------------------------------
% chapter 1
\include{chapter1} % Introduction
% chapter 2
\include{chapter2}
% chapter 3
\include{chapter3}
% chapter 6
\include{chapter6} % Conclusions
%-----------------------------------------------------------------------
% Appendices: use \appendix switch to change to appendices.
%-----------------------------------------------------------------------
\appendix
% First appendix
\include{appendix1} % A long proof
% Second Appendix
\include{appendix2}
%-----------------------------------------------------------------------
% Bibliography: The clearpage is needed to get the page reference right.
%-----------------------------------------------------------------------
\clearpage
\addcontentsline{toc}{chapter}{References}
\bibliographystyle{adfathesis}
\bibliography{mybib}
\end{document}
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