8 files changed, 113 insertions, 27 deletions
diff --git a/Master/texmf-dist/bibtex/bst/resphilosophica/resphilosophica.bst b/Master/texmf-dist/bibtex/bst/resphilosophica/resphilosophica.bst
index 3d22f88b418..86f0be4e6fd 100644
--- a/Master/texmf-dist/bibtex/bst/resphilosophica/resphilosophica.bst
+++ b/Master/texmf-dist/bibtex/bst/resphilosophica/resphilosophica.bst
@@ -1184,7 +1184,6 @@ FUNCTION {incollection}
   new.block
   crossref missing$
     { format.in.ed.booktitle "booktitle" output.check
-      new.sentence
       format.bvolume output
       format.number.series output
       format.chapter.pages output
@@ -1215,7 +1214,6 @@ FUNCTION {inproceedings}
   new.block
   crossref missing$
     { format.in.ed.booktitle "booktitle" output.check
-      new.sentence
       format.bvolume output
       format.number.series output
       titlenote empty$
diff --git a/Master/texmf-dist/doc/latex/resphilosophica/README b/Master/texmf-dist/doc/latex/resphilosophica/README
index b7847a27c24..7280a3af5f6 100644
--- a/Master/texmf-dist/doc/latex/resphilosophica/README
+++ b/Master/texmf-dist/doc/latex/resphilosophica/README
@@ -7,4 +7,7 @@ This work was commissioned by the Saint Louis University.
 
 Changes
 
-  version 1.10:  Bibliography formatting
+  version 1.11:  Automatic doi generation
+                 Bibliography formatting changes
+
+  version 1.10:  Bibliography formatting changes
+\ No newline at end of file
diff --git a/Master/texmf-dist/doc/latex/resphilosophica/resphilosophica.pdf b/Master/texmf-dist/doc/latex/resphilosophica/resphilosophica.pdf
index 6b9d9252536..1e70cc97eb4 100644
--- a/Master/texmf-dist/doc/latex/resphilosophica/resphilosophica.pdf
+++ b/Master/texmf-dist/doc/latex/resphilosophica/resphilosophica.pdf
diff --git a/Master/texmf-dist/doc/latex/resphilosophica/rpsample.bib b/Master/texmf-dist/doc/latex/resphilosophica/rpsample.bib
index 0f254493480..cd6202b2451 100644
--- a/Master/texmf-dist/doc/latex/resphilosophica/rpsample.bib
+++ b/Master/texmf-dist/doc/latex/resphilosophica/rpsample.bib
@@ -46,3 +46,26 @@
     titlenote =	 {Rev. and Enl. by E.~M.~Lifshitz and L.~P.~Pitaevskii}
 
 }
+
+@InCollection{Rao07:BeliefPropagation,
+  author = 	 {Rajesh P. N. Rao},
+  title = 	 {Neural Models of {B}ayesian Belief Propagation},
+  booktitle = 	 {Bayesian Brain: Probabilictic Approaches to Neural Coding},
+  crossref =	 {BayesianBrain2007},
+  chapter =      11,
+  pages =	 {239--267}
+}
+
+@Book{BayesianBrain2007,
+  editor =	 {Doya, Kenji and Ishii, Shin and Pouget, Alexandre 
+                  and Rao, Rajesh P. N.},
+  title = 	 {Bayesian Brain: Probabilistic Approaches to Neural Coding},
+  booktitle = 	 {Bayesian Brain: Probabilistic Approaches to Neural Coding},
+  publisher = 	 {The MIT Press},
+  year = 	 2007,
+  series =	 {Computational Neuroscience},
+  address =	 {Cambridge, MA; London, England},
+  isbn =         {026204238X},
+  keywords =     {bayesian, computational, neural-implementation, 
+                  probabilistic-inference, probabilistic-reasoning},
+}
diff --git a/Master/texmf-dist/doc/latex/resphilosophica/rpsample.pdf b/Master/texmf-dist/doc/latex/resphilosophica/rpsample.pdf
index 9ada70632ff..678dccb0dca 100644
--- a/Master/texmf-dist/doc/latex/resphilosophica/rpsample.pdf
+++ b/Master/texmf-dist/doc/latex/resphilosophica/rpsample.pdf
diff --git a/Master/texmf-dist/doc/latex/resphilosophica/rpsample.tex b/Master/texmf-dist/doc/latex/resphilosophica/rpsample.tex
index d01b46067f6..32259a81ca5 100644
--- a/Master/texmf-dist/doc/latex/resphilosophica/rpsample.tex
+++ b/Master/texmf-dist/doc/latex/resphilosophica/rpsample.tex
@@ -2,20 +2,12 @@
 %\documentclass[manuscript]{resphilosophica}
 \documentclass{resphilosophica}
 \usepackage{kantlipsum}
-
-\begin{document}
-%
-% Paper information
-%
-%
-% We do not want \\ in the headers, hence the
-% optional argument for \title
 \title[A Sample Paper: A Template]{A Sample Paper:\\ A Template}
 \volumenumber{90}
 \issuenumber{1--2}
 \publicationyear{2013}
 \publicationmonth{January--February}
-\doinumber{100.200/rp-32-56-78}
+\papernumber{2}
 \author{Boris Veytsman}
 \address{Computational Materials Science Center, MS 6A2\\
   George Mason University\\
@@ -25,7 +17,7 @@
 \urladdr{http://borisv.lk.net}
 
 % The next affiliation refers to both authors here
-\author{A. U. Th\o r}
+\author{A. U. Th{\o}r}
 \author{C. O. R\"espondent}
 \address{Kant-Forschungsstelle Universit\"at Mainz\\
   Colonel-Kleinmann-Weg 2\\
@@ -33,6 +25,14 @@
   Germany}
 \thanks{The work on this package was supported by Sant Lois University}
 
+\begin{document}
+%
+% Paper information
+%
+%
+% We do not want \\ in the headers, hence the
+% optional argument for \title
+
 % Abstract must PRECEDE \maketitle
 \begin{abstract}
   The things in themselves are what first give rise to reason, as is
@@ -68,13 +68,14 @@
           % here, we need to explicitly suppress indentation.
 \kant[2-4]\kant[34]
 
-\kant*[6]\footnote{As is shown in the writings of Aristotle, pure
+\kant*[7]\footnote{As is shown in the writings of Aristotle, pure
   logic, in the case of the discipline of natural reason, abstracts
   from all content of knowledge. Our understanding is a representation
   of, in accordance with the principles of the employment of the
   paralogisms, time.  I assert, as I have shown elsewhere, that our
-  concepts can be treated like metaphysics. See also \citep{Landau5}, 
-  \citep{Hoff10} and \citep{Knuth94:TheTeXbook}.}
+  concepts can be treated like metaphysics. See also \citep{Landau5},
+  \citep{Hoff10}, \citep{Rao07:BeliefPropagation} and
+  \citep{Knuth94:TheTeXbook}.}
 
 \section{Discussion}
 \label{sec:discussion}
diff --git a/Master/texmf-dist/source/latex/resphilosophica/resphilosophica.dtx b/Master/texmf-dist/source/latex/resphilosophica/resphilosophica.dtx
index 8a527831338..bb90b2f474f 100644
--- a/Master/texmf-dist/source/latex/resphilosophica/resphilosophica.dtx
+++ b/Master/texmf-dist/source/latex/resphilosophica/resphilosophica.dtx
@@ -1,8 +1,8 @@
 % \iffalse
 %<*gobble>
-% $Id: resphilosophica.dtx,v 1.22 2012-09-20 02:54:34 boris Exp $
+% $Id: resphilosophica.dtx,v 1.25 2013-01-08 18:42:59 boris Exp $
 %
-% Copyright 2012, Boris Veytsman <boris@varphi.com>
+% Copyright 2012-2013, Boris Veytsman <boris@varphi.com>
 % This work may be distributed and/or modified under the
 % conditions of the LaTeX Project Public License, either
 % version 1.3 of this license or (at your option) any 
@@ -20,7 +20,7 @@
 % derived file resphilosophica.cls
 %
 % \fi 
-% \CheckSum{1030}
+% \CheckSum{1080}
 %
 %
 %% \CharacterTable
@@ -53,7 +53,7 @@
 \ProvidesFile{resphilosophica.dtx}
 %</gobble>
 %<class>\ProvidesClass{resphilosophica}
-[2012/09/19 v1.10 Typesetting articles for Res Philosophica]
+[2013/01/08 v1.11 Typesetting articles for Res Philosophica]
 %<*gobble>
 %    \end{macrocode}
 %
@@ -69,6 +69,7 @@
 % \changes{v1.8}{2012/09/12}{Added blank last page if the last page is
 % odd}  
 % \changes{v1.10}{2012/09/19}{Bibliography changes}  
+% \changes{v1.11}{2013/01/08}{Bibliography changes}  
 %
 %\iffalse
 %    \begin{macrocode}
@@ -337,11 +338,11 @@
 % \DescribeMacro{\issuenumber}
 % \DescribeMacro{\publicationyear}
 % \DescribeMacro{\publicationmonth}
-% \DescribeMacro{\doinumber}
+% \DescribeMacro{\papernumber}
 % \DescribeMacro{\startpage}
 % \DescribeMacro{\endpage}
 %  The macros |\volumenumber|, |\issuenumber|, |\publicationyear|,
-%  |\publicationmonth|, |\doinumber|, |\startpage|, |\endpage| set up the
+%  |\publicationmonth|, |\papernumber|, |\startpage|, |\endpage| set up the
 %  corresponding 
 %  data for the paper, for example:
 % \begin{verbatim}
@@ -349,13 +350,21 @@
 % \issuenumber{1--2}
 % \publicationyear{2012}
 % \publicationmonth{January and April}
-% \doinumber{100.234/RP-2-3-12}
+% \papernumber{2}
 % \startpage{1}
 % \endpage{39}
 % \end{verbatim}
 % Note that if the argument of |\endpage| is empty, \LaTeX{} tries to
 % calculate the last page number as best as it can.
 %
+% \DescribeMacro{\doinumber}
+% Normally you do not need to set the DOI of the paper: \TeX{} will
+% construct the number using the paper data (including paper number in
+% the current issue).  However, you \emph{may} override its decision
+% using the command |\doinumber| which sets the DOI explicitly, for
+% example, |\doinumber|\marg{10.11612/resphilosophica.2013.01.01}.
+% You probably  should not use this macro.
+%
 % \DescribeMacro{\prevpaper}
 % Instead of setting |\startpage|, one can use the the command
 % |\prevpaper|\marg{previous paper}, with the argument being the
@@ -878,12 +887,22 @@
 %    \end{macrocode}
 % \end{macro}
 %
+% \begin{macro}{\papernumber}
+% \changes{v1.11}{2012/12/24}{Added macro} 
+%   This is absent from the |\issueinfo|.  
+%    \begin{macrocode}
+\def\papernumber#1{\def\currentpaper{#1}}
+\papernumber{0000}
+%   
+% \end{macro}
+%
+%
 % \begin{macro}{\doinumber}
-% \changes{v1.1}{2012/09/01}{Added macro} 
+% \changes{v1.11}{2012/12/25}{Added default} 
 %   DOI number for the article:
 %    \begin{macrocode}
 \def\doinumber#1{\gdef\@doinumber{#1}}
-\doinumber{}
+\doinumber{10.11612/resphil.\currentyear.\currentvolume.\currentissue.\currentpaper}
 %    \end{macrocode}
 % \end{macro}
 % 
@@ -1157,6 +1176,7 @@
 % \begin{macro}{\RESP@write@paper@info}
 % \changes{v1.1}{2012/09/01}{Added protection for \cmd{\\}}  
 % \changes{v1.2}{2012/09/02}{Used \cmd{\protected@write}}  
+% \changes{v1.11}{2012/12/25}{Added writing info for crossref}  
 %   This writes the information about the paper into the file
 %   |jobname.rpi|.  Note that hyperref makes our life a little bit
 %   more complex
@@ -1175,6 +1195,27 @@
     \def\and{\string\and\space}%
     \protected@write\@mainrpi{}%
     {\string\articleentry{\authors}{\@title}{\start@page}{\@tempa}}%
+%    \end{macrocode}
+%  The next lines are for crossref software
+%    \begin{macrocode}
+   \protected@write\@mainrpi{}%
+    {\@percentchar authors=\authors}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar title=\@title}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar year=\currentyear}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar volume=\currentvolume}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar issue=\currentissue}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar paper=\currentpaper}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar startpage=\start@page}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar endpage=\@tempa}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar doi=\@doinumber}%
     \closeout\@mainrpi
     \fi
 \egroup}
diff --git a/Master/texmf-dist/tex/latex/resphilosophica/resphilosophica.cls b/Master/texmf-dist/tex/latex/resphilosophica/resphilosophica.cls
index 5d569126b8c..70587b3f363 100644
--- a/Master/texmf-dist/tex/latex/resphilosophica/resphilosophica.cls
+++ b/Master/texmf-dist/tex/latex/resphilosophica/resphilosophica.cls
@@ -22,7 +22,7 @@
 %% in the same archive or directory.)
 \NeedsTeXFormat{LaTeX2e}
 \ProvidesClass{resphilosophica}
-[2012/09/19 v1.10 Typesetting articles for Res Philosophica]
+[2013/01/08 v1.11 Typesetting articles for Res Philosophica]
 \RequirePackage{xkeyval}
 \newif\ifRESP@fontauto
 \RESP@fontautotrue
@@ -172,8 +172,10 @@
 \publicationyear{2090}
 \def\publicationmonth#1{\def\currentmonth{#1}}
 \publicationmonth{January--February}
+\def\papernumber#1{\def\currentpaper{#1}}
+\papernumber{0000}
 \def\doinumber#1{\gdef\@doinumber{#1}}
-\doinumber{}
+\doinumber{10.11612/resphil.\currentyear.\currentvolume.\currentissue.\currentpaper}
 \def\startpage#1{\pagenumbering{arabic}\setcounter{page}{#1}%
   \def\start@page{#1}%
   \ifnum\c@page<\z@ \pagenumbering{roman}\setcounter{page}{-#1}%
@@ -324,6 +326,24 @@
     \def\and{\string\and\space}%
     \protected@write\@mainrpi{}%
     {\string\articleentry{\authors}{\@title}{\start@page}{\@tempa}}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar authors=\authors}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar title=\@title}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar year=\currentyear}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar volume=\currentvolume}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar issue=\currentissue}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar paper=\currentpaper}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar startpage=\start@page}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar endpage=\@tempa}%
+   \protected@write\@mainrpi{}%
+    {\@percentchar doi=\@doinumber}%
     \closeout\@mainrpi
     \fi
 \egroup}