summaryrefslogtreecommitdiff
path: root/Master/texmf-dist/tex/latex/textopo/textopo.def
diff options
context:
space:
mode:
Diffstat (limited to 'Master/texmf-dist/tex/latex/textopo/textopo.def')
-rw-r--r--Master/texmf-dist/tex/latex/textopo/textopo.def133
1 files changed, 133 insertions, 0 deletions
diff --git a/Master/texmf-dist/tex/latex/textopo/textopo.def b/Master/texmf-dist/tex/latex/textopo/textopo.def
new file mode 100644
index 00000000000..5034fcf422b
--- /dev/null
+++ b/Master/texmf-dist/tex/latex/textopo/textopo.def
@@ -0,0 +1,133 @@
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%% %%%%%
+%%%%% Default parameter settings for the LaTeX ``TeXtopo'' package %%%%%
+%%%%% %%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%% %%%%%
+%%%%% This example file contains all standard settings of the TeXtopo %%%%%
+%%%%% package. It can be used as a template for the creation of perso- %%%%%
+%%%%% nal parameter files. All TeXtopo user commands are allowed and %%%%%
+%%%%% functional when specified here. %%%%%
+%%%%% %%%%%
+%%%%% To activate these settings for your topology plot load this file %%%%%
+%%%%% by naming it as optional parameter at the beginning of the tex- %%%%%
+%%%%% topo environment, e.g. %%%%%
+%%%%% %%%%%
+%%%%% \begin{textopo}[myparameterfile] %%%%%
+%%%%% . %%%%%
+%%%%% . %%%%%
+%%%%% \end{textopo} %%%%%
+%%%%% %%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+\Nterm{intra} % Assume N-terminus intracellular
+\loopextent{30} % Set loop extent to 30 residues
+\shadingcolors{blues} % Use color scheme `blues' for shading
+\showmembrane % Show the membrane
+\membranecolors{Black}{White} % as black lines w/o filling
+\labeloutside{extra} % Label extracellular side with `extra'
+\labelinside{intra} % Label intracellular side with `intra'
+\rulethickness{0.5pt} % Set thickness of label rules to 0.5pt
+\countercolor{Red} % Use red color for position counter
+\helixstyle{perspective} % Draw helical wheels in perspective
+\showbonds % Show bonds on helical wheels
+\hidemoment % Do not show hydrophobic moment
+\momentcolor{Lavender} % Lavender color for hydrophobic moment
+\scalemoment{100} % Moment rule length is 100%
+\showwheelnumbering % Show residue numbers on helical wheels
+\scalewheel{100} % Show full size helical wheel
+\symbolsize{medium} % Use medium sized symbols in wheels
+\donotshadestartMet % Do not shade the start methionine
+\showNterm % Show amino terminus as NH2
+\showCterm % Show carboxy terminus as COOH
+
+\setfamily{labels}{sf} % Use sans serif family for labels
+\setseries{labels}{md} % Use normal series for labels
+\setshape {labels}{up} % Use upright shape for labels
+\setfamily{membranelabels}{sf} % Use sans serif for membrane labels
+\setseries{membranelabels}{md} % Use normal series for membrane labels
+\setshape {membranelabels}{up} % Use upright shape for membrane labels
+\setfamily{looplabels}{sf} % Use sans serif for loop labels
+\setseries{looplabels}{bf} % Use bold face for loop labels
+\setshape {looplabels}{up} % Use upright shape for loop labels
+\looplabelcolor{Red} % Set loop label color to `Red'
+\setfamily{TMlabels}{sf} % Use sans serif for TM labels
+\setseries{TMlabels}{bf} % Use bold face for TM labels
+\setshape {TMlabels}{up} % Use upright shape for TM labels
+\TMlabelcolor{Blue} % Set TM label color to `Blue'
+\labelTMs{\Romancount} % Label the TMs with roman numbers
+\setfamily{legend}{sf} % Use sans serif font for legend texts
+\setseries{legend}{md} % Use normal series for legend texts
+\setshape {legend}{up} % Use upright shape for legend texts
+\setsize {legend}{normalsize} % Use normal font size for legends
+\legendcolor{Black} % Set legend text color to `Black'
+\showlegend % Show the legend
+\hidegrid % Do not show the grid
+
+\labelstyle{CONFLICT} % Label style definitions for
+ {diamond}{Black}{Blue}{White} %
+ {Conflicting reports in literatur} % SwissProt data files
+
+\labelstyle{VARIANT} % |
+ {diamond}{Black}{Orange}{Black} % |
+ {Sequence variants} % V
+
+\labelstyle{VARSPLIC} %
+ {diamond}{Black}{Apricot}{Black} %
+ {Splice variants} %
+
+\labelstyle{MUTAGEN} %
+ {diamond}{Black}{Red}{White} %
+ {Mutation sites} %
+
+\labelstyle{SIGNAL} %
+ {square}{Black}{Yellow}{Black} %
+ {Signal peptide} %
+
+\labelstyle{TRANSIT} %
+ {square}{Black}{Green}{Black} %
+ {Transit peptide} %
+
+\labelstyle{PROPEP} %
+ {square}{Black}{Red}{White} %
+ {Propeptide} %
+
+\labelstyle{CHAIN} %
+ {circ}{Black}{Aquamarine}{Blue} %
+ {Polypeptide chain} %
+
+\labelstyle{PEPTIDE} %
+ {circ}{Black}{Peach}{Black} %
+ {Released peptide} %
+
+\labelstyle{DOMAIN} %
+ {circ}{Black}{Turquoise}{Black} %
+ {Domain} %
+
+\labelstyle{CABIND} %
+ {circ}{Black}{Gray50}{White} %
+ {Calcium binding domain} %
+
+\labelstyle{DNABIND} %
+ {circ}{Black}{YellowGreen}{Black} %
+ {DNA binding domain} %
+
+\labelstyle{NPBIND} %
+ {circ}{Black}{Melon}{Black} %
+ {Nucleotide phosphate binding} %
+
+\labelstyle{ZNFING} %
+ {circ}{Black}{Lavender}{Black} %
+ {Zinc finger} %
+
+\labelstyle{SIMILAR} %
+ {circ}{Black}{SpringGreen}{Black} %
+ {Similar region} %
+
+\labelstyle{REPEAT} %
+ {circ}{Black}{Plum}{White} %
+ {Sequence repeat} %
+
+\labelstyle{SITE} %
+ {circ}{Black}{ForestGreen}{White} %
+ {Special site} %