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diff --git a/Master/texmf-dist/tex/latex/biochemistry-colors/Biochemistry-colors.sty b/Master/texmf-dist/tex/latex/biochemistry-colors/Biochemistry-colors.sty new file mode 100644 index 00000000000..7bba3d70e74 --- /dev/null +++ b/Master/texmf-dist/tex/latex/biochemistry-colors/Biochemistry-colors.sty @@ -0,0 +1,213 @@ +% Copyright 2017 by Dr Engelbert Buxbaum <engelbert_buxbaum@web.de> +% +% This file may be distributed and/or modified +% +% 1. under the LaTeX Project Public License and/or +% 2. under the GNU Public License. +% +% Literature: +% http://jmol.sourceforge.net/jscolors/#Residues:%20amino%20acids,%20nucleotides +% http://www.glycopedia.eu/IMG/pdf/the_symbolic_representation_of_monosaccharides_2014.pdf +% https://en.wikipedia.org/wiki/CPK_coloring + +\ProvidesPackage{biochemistry-colors}[2017/04/20 v1.00 named standard colors for biochemistry] +\NeedsTeXFormat{LaTeX2e} +\RequirePackage{xcolor} + +% Shapely-colors for amino acids (with Pyl and Sec added) +\definecolor{Alanine}{rgb}{0.549,1.000,0.549} +\definecolor{Arginine}{rgb}{0.000,0.000,0.486} +\definecolor{Asparagine}{rgb}{1.000,0.486,0.439} +\definecolor{Aspartate}{rgb}{0.628,0.000,0.259} +\definecolor{Cysteine}{rgb}{1.000,1.000,0.439} +\definecolor{Glutamine}{rgb}{1.000,0.298,0.298} +\definecolor{Glutamate}{rgb}{0.400,0.000,0.000} +\definecolor{Glycine}{rgb}{1.000,1.000,1.000} +\definecolor{Histidine}{rgb}{0.439,0.439,1.000} +\definecolor{Isoleucine}{rgb}{0.000,0.298,0.000} +\definecolor{Leucine}{rgb}{0.271,0.369,0.271} +\definecolor{Lysine}{rgb}{0.278,0.278,0.722} +\definecolor{Methionine}{rgb}{0.722,0.628,0.259} +\definecolor{Phenylalanine}{rgb}{0.326,0.298,0.322} +\definecolor{Proline}{rgb}{0.322,0.322,0.322} +\definecolor{Pyrrolysine}{rgb}{0.137,0.333,0.078} +\definecolor{Selenocysteine}{rgb}{0.400,0.231,0.000} +\definecolor{Serine}{rgb}{1.000,0.439,0.259} +\definecolor{Threonine}{rgb}{0.722,0.298,0.000} +\definecolor{Tryptophan}{rgb}{0.310,0.275,0.000} +\definecolor{Tyrosine}{rgb}{0.549,0.439,0.298} +\definecolor{Valine}{rgb}{1.000,0.549,1.000} +\definecolor{other}{rgb}{1.000,0.000,1.000} + +% Shapely-colors of nucleotides +\definecolor{Adenosine}{rgb}{0.628,0.628,1.000} +\definecolor{Cytosin}{rgb}{1.000,0.549,0.294} +\definecolor{Guanosine}{rgb}{1.000,0.439,0.439} +\definecolor{Tymidine}{rgb}{0.628,1.000,0.628} +\definecolor{Uridine}{rgb}{0.722,0.722,0.722} + +% CPK-Colors of elements +\definecolor{CPK-Carbon}{rgb}{0.126,0.126,0.126} +\definecolor{CPK-Oxygen}{rgb}{0.933,0.126,0.063} +\definecolor{CPK-Hydrogen}{rgb}{1.000,1.000,1.000} +\definecolor{CPK-Nitrogen}{rgb}{0.126,0.377,1.000} +\definecolor{CPK-Sulfur}{rgb}{1.000,1.000,0.000} +\definecolor{CPK-Phosphorus}{rgb}{0.502,0.126,1.000} +\definecolor{CPK-Chlorine}{rgb}{0.000,0.733,0.000} +\definecolor{CPK-Bromine}{rgb}{0.000,0.533,0.000} +\definecolor{CPK-Iodine}{rgb}{0.000,0.333,0.000} +\definecolor{CPK-Metall}{rgb}{0.816,0.816,0.816} + +% Jmol-colors of elements +\definecolor{hydrogen}{rgb}{1.000,1.000,1.000} +\definecolor{helium}{rgb}{0.851,1.000,1.000} +\definecolor{lithium}{rgb}{0.800,0.502,1.000} +\definecolor{beryllium}{rgb}{0.761,1.000,0.000} +\definecolor{boron}{rgb}{1.000,0.710,0.710} +\definecolor{carbon}{rgb}{0.565,0.565,0.565} +\definecolor{nitrogen}{rgb}{0.188,0.314,0.973} +\definecolor{oxygen}{rgb}{1.000,0.051,0.051} +\definecolor{fluorine}{rgb}{0.565,0.878,0.314} +\definecolor{neon}{rgb}{0.702,0.890,0.961} +\definecolor{sodium}{rgb}{0.671,0.361,0.949} +\definecolor{magnesium}{rgb}{0.541,1.000,0.000} +\definecolor{aluminium}{rgb}{0.749,0.651,0.651} +\definecolor{silicon}{rgb}{0.941,0.784,0.628} +\definecolor{phosphorus}{rgb}{1.000,0.502,0.000} +\definecolor{sulfur}{rgb}{1.000,1.000,0.188} +\definecolor{chlorine}{rgb}{0.122,0.941,0.122} +\definecolor{argon}{rgb}{0.502,0.820,0.890} +\definecolor{potassium}{rgb}{0.561,0.251,0.831} +\definecolor{calcium}{rgb}{0.239,1.000,0.000} +\definecolor{scandium}{rgb}{0.902,0.902,0.902} +\definecolor{titanium}{rgb}{0.749,0.761,0.780} +\definecolor{vanadium}{rgb}{0.651,0.651,0.671} +\definecolor{chromium}{rgb}{0.541,0.600,0.780} +\definecolor{manganese}{rgb}{0.612,0.478,0.780} +\definecolor{iron}{rgb}{0.878,0.400,0.200} +\definecolor{cobalt}{rgb}{0.941,0.565,0.628} +\definecolor{nickel}{rgb}{0.314,0.816,0.314} +\definecolor{copper}{rgb}{0.784,0.502,0.200} +\definecolor{zinc}{rgb}{0.490,0.502,0.690} +\definecolor{gallium}{rgb}{0.761,0.561,0.561} +\definecolor{germanium}{rgb}{0.400,0.561,0.561} +\definecolor{arsenic}{rgb}{0.741,0.502,0.890} +\definecolor{selenium}{rgb}{1.000,0.631,0.000} +\definecolor{bromine}{rgb}{0.651,0.161,0.161} +\definecolor{krypton}{rgb}{0.361,0.722,0.820} +\definecolor{rubidium}{rgb}{0.439,0.180,0.690} +\definecolor{strontium}{rgb}{0.000,1.000,0.000} +\definecolor{yttrium}{rgb}{0.580,1.000,1.000} +\definecolor{zirconium}{rgb}{0.580,0.878,0.878} +\definecolor{niobium}{rgb}{0.451,0.761,0.788} +\definecolor{molybdenum}{rgb}{0.329,0.710,0.710} +\definecolor{technetium}{rgb}{0.231,0.620,0.620} +\definecolor{ruthenium}{rgb}{0.141,0.561,0.561} +\definecolor{rhodium}{rgb}{0.039,0.490,0.549} +\definecolor{palladium}{rgb}{0.000,0.412,0.522} +\definecolor{silver}{rgb}{0.753,0.753,0.753} +\definecolor{cadmium}{rgb}{1.000,0.851,0.561} +\definecolor{indium}{rgb}{0.651,0.459,0.451} +\definecolor{tin}{rgb}{0.400,0.502,0.502} +\definecolor{antimony}{rgb}{0.620,0.388,0.710} +\definecolor{tellurium}{rgb}{0.831,0.478,0.000} +\definecolor{iodine}{rgb}{0.580,0.000,0.580} +\definecolor{xenon}{rgb}{0.259,0.620,0.690} +\definecolor{caesium}{rgb}{0.341,0.090,0.561} +\definecolor{barium}{rgb}{0.000,0.788,0.000} +\definecolor{lanthanum}{rgb}{0.439,0.831,1.000} +\definecolor{cerium}{rgb}{1.000,1.000,0.780} +\definecolor{praseodymium}{rgb}{0.851,1.000,0.780} +\definecolor{neodymium}{rgb}{0.780,1.000,0.780} +\definecolor{promethium}{rgb}{0.639,1.000,0.780} +\definecolor{samarium}{rgb}{0.561,1.000,0.780} +\definecolor{europium}{rgb}{0.380,1.000,0.780} +\definecolor{gadolinium}{rgb}{0.271,1.000,0.780} +\definecolor{terbium}{rgb}{0.188,1.000,0.780} +\definecolor{dysprosium}{rgb}{0.122,1.000,0.780} +\definecolor{holmium}{rgb}{0.000,1.000,0.612} +\definecolor{erbium}{rgb}{0.000,0.902,0.459} +\definecolor{thulium}{rgb}{0.000,0.831,0.322} +\definecolor{ytterbium}{rgb}{0.000,0.749,0.220} +\definecolor{lutetium}{rgb}{0.000,0.671,0.141} +\definecolor{hafnium}{rgb}{0.302,0.761,1.000} +\definecolor{tantalum}{rgb}{0.302,0.651,1.000} +\definecolor{tungsten}{rgb}{0.129,0.580,0.839} +\definecolor{rhenium}{rgb}{0.149,0.490,0.671} +\definecolor{osmium}{rgb}{0.149,0.400,0.588} +\definecolor{iridium}{rgb}{0.090,0.329,0.529} +\definecolor{platinum}{rgb}{0.816,0.816,0.878} +\definecolor{gold}{rgb}{1.000,0.820,0.137} +\definecolor{mercury}{rgb}{0.722,0.722,0.816} +\definecolor{thallium}{rgb}{0.651,0.329,0.302} +\definecolor{lead}{rgb}{0.341,0.349,0.380} +\definecolor{bismuth}{rgb}{0.620,0.310,0.710} +\definecolor{polonium}{rgb}{0.671,0.361,0.000} +\definecolor{astatine}{rgb}{0.459,0.310,0.271} +\definecolor{radon}{rgb}{0.259,0.510,0.588} +\definecolor{francium}{rgb}{0.259,0.000,0.400} +\definecolor{radium}{rgb}{0.000,0.490,0.000} +\definecolor{actinium}{rgb}{0.439,0.671,0.980} +\definecolor{thorium}{rgb}{0.000,0.729,1.000} +\definecolor{protactinium}{rgb}{0.000,0.631,1.000} +\definecolor{uranium}{rgb}{0.000,0.561,1.000} +\definecolor{neptunium}{rgb}{0.000,0.502,1.000} +\definecolor{plutonium}{rgb}{0.000,0.420,1.000} +\definecolor{americium}{rgb}{0.329,0.361,0.949} +\definecolor{curium}{rgb}{0.471,0.361,0.890} +\definecolor{berkelium}{rgb}{0.541,0.310,0.890} +\definecolor{californium}{rgb}{0.631,0.212,0.831} +\definecolor{einsteinium}{rgb}{0.702,0.122,0.831} +\definecolor{fermium}{rgb}{0.702,0.122,0.729} +\definecolor{mendelevium}{rgb}{0.702,0.051,0.651} +\definecolor{nobelium}{rgb}{0.741,0.051,0.529} +\definecolor{lawrencium}{rgb}{0.780,0.000,0.400} +\definecolor{rutherfordium }{rgb}{0.800,0.000,0.349} +\definecolor{dubnium}{rgb}{0.820,0.000,0.310} +\definecolor{seaborgium}{rgb}{0.851,0.000,0.271} +\definecolor{bohrium}{rgb}{0.878,0.000,0.220} +\definecolor{hassium}{rgb}{0.902,0.000,0.180} +\definecolor{meitnerium}{rgb}{0.922,0.000,0.149} +\definecolor{darmstadtium}{rgb}{1.000,0.078,0.577} +\definecolor{roentgenium}{rgb}{1.000,0.078,0.577} +\definecolor{copernicium}{rgb}{1.000,0.078,0.577} +\definecolor{nihonium}{rgb}{1.000,0.078,0.577} +\definecolor{flerovium}{rgb}{1.000,0.078,0.577} +\definecolor{moscovium}{rgb}{1.000,0.078,0.577} +\definecolor{livermorium}{rgb}{1.000,0.078,0.577} +\definecolor{tennessine}{rgb}{1.000,0.078,0.577} +\definecolor{oganesson}{rgb}{1.000,0.078,0.577} + +% Isotopes +\definecolor{Deuterium}{rgb}{1.000,1.000,0.753} +\definecolor{Tritium}{rgb}{1.000,1.000,0.628} +\definecolor{carbon-13}{rgb}{0.314,0.314,0.314} +\definecolor{carbon-14}{rgb}{0.251,0.251,0.251} +\definecolor{nitrogen-15}{rgb}{0.063,0.314,0.314} + +% Structures +\definecolor{alpha-helix}{rgb}{1.000,0.000,0.502} +\definecolor{310-helix}{rgb}{0.628,0.000,0.502} +\definecolor{pi-helix}{rgb}{0.377,0.000,0.502} +\definecolor{beta-strand}{rgb}{1.000,0.784,0.000} +\definecolor{beta-turn}{rgb}{0.377,0.502,1.000} +\definecolor{DNA}{rgb}{0.682,0.000,0.996} +\definecolor{RNA}{rgb}{0.992,0.004,0.384} +\definecolor{carbohydrate}{rgb}{0.651,0.651,0.980} +\definecolor{other-struc}{rgb}{0.502,0.502,0.502} + +% Sugars +\definecolor{Ribose}{rgb}{0.310,0.506,0.741} +\definecolor{Xylose}{rgb}{0.980,0.392,0.000} +\definecolor{Glucose}{rgb}{0.000,0.000,0.980} +\definecolor{Mannose}{rgb}{0.000,0.784,0.196} +\definecolor{Gulose}{rgb}{1.000,0.600,1.000} +\definecolor{Idose}{rgb}{0.588,0.392,0.196} +\definecolor{Galactose}{rgb}{1.000,1.000,0.000} +\definecolor{KDO}{rgb}{0.557,0.706,0.890} +\definecolor{Fucose}{rgb}{0.980,0.000,0.000} +\definecolor{Nana}{rgb}{0.490,0.000,0.490} +\definecolor{Fructose}{rgb}{0.753,0.000,0.000} +\definecolor{Sorbose}{rgb}{0.894,0.424,0.039} +\definecolor{Rhamnose}{rgb}{0.498,0.498,0.498} +\definecolor{Quinovose}{rgb}{0.000,0.125,0.376} |