diff options
author | Karl Berry <karl@freefriends.org> | 2024-12-29 21:47:17 +0000 |
---|---|---|
committer | Karl Berry <karl@freefriends.org> | 2024-12-29 21:47:17 +0000 |
commit | 262530ff1206ca770dd9d0c406945ddceb5f4c6c (patch) | |
tree | a34eba6d423d50c6600c018f9bb987f789c82e90 /Master | |
parent | 687a42fba4aa88e6eef24a40568f4d9403fda23b (diff) |
rm afparticle, obsolete on CTAN
git-svn-id: svn://tug.org/texlive/trunk@73234 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Master')
-rw-r--r-- | Master/texmf-dist/doc/latex/afparticle/Makefile | 58 | ||||
-rw-r--r-- | Master/texmf-dist/doc/latex/afparticle/README | 14 | ||||
-rw-r--r-- | Master/texmf-dist/doc/latex/afparticle/afparticle.pdf | bin | 343771 -> 0 bytes | |||
-rw-r--r-- | Master/texmf-dist/doc/latex/afparticle/afpsample.bib | 1213 | ||||
-rw-r--r-- | Master/texmf-dist/doc/latex/afparticle/afpsample.pdf | bin | 188883 -> 0 bytes | |||
-rw-r--r-- | Master/texmf-dist/doc/latex/afparticle/afpsample.tex | 117 | ||||
-rw-r--r-- | Master/texmf-dist/doc/latex/afparticle/vitruvian.jpg | bin | 63756 -> 0 bytes | |||
-rw-r--r-- | Master/texmf-dist/source/latex/afparticle/afparticle.dtx | 1069 | ||||
-rw-r--r-- | Master/texmf-dist/source/latex/afparticle/afparticle.ins | 29 | ||||
-rw-r--r-- | Master/texmf-dist/tex/latex/afparticle/afparticle.cls | 297 | ||||
-rwxr-xr-x | Master/tlpkg/bin/tlpkg-ctan-check | 2 | ||||
-rwxr-xr-x | Master/tlpkg/libexec/ctan2tds | 1 | ||||
-rw-r--r-- | Master/tlpkg/tlpsrc/afparticle.tlpsrc | 0 | ||||
-rw-r--r-- | Master/tlpkg/tlpsrc/collection-publishers.tlpsrc | 1 |
14 files changed, 2 insertions, 2799 deletions
diff --git a/Master/texmf-dist/doc/latex/afparticle/Makefile b/Master/texmf-dist/doc/latex/afparticle/Makefile deleted file mode 100644 index 7ba268cc573..00000000000 --- a/Master/texmf-dist/doc/latex/afparticle/Makefile +++ /dev/null @@ -1,58 +0,0 @@ -# -# Makefile for resphilosophica package -# -# This file is in public domain -# -# $Id: Makefile,v 1.5 2014-12-23 17:16:01 boris Exp $ -# - -PACKAGE=afparticle - -SAMPLES = afpsample.tex - -PDF = $(PACKAGE).pdf ${SAMPLES:%.tex=%.pdf} - -all: ${PDF} - - -%.pdf: %.dtx $(PACKAGE).cls - pdflatex $< - - bibtex $* - pdflatex $< - - makeindex -s gind.ist -o $*.ind $*.idx - - makeindex -s gglo.ist -o $*.gls $*.glo - pdflatex $< - while ( grep -q '^LaTeX Warning: Label(s) may have changed' $*.log) \ - do pdflatex $<; done - - -%.cls: %.ins %.dtx - pdflatex $< - -%.pdf: %.tex $(PACKAGE).cls - pdflatex $< - - bibtex $* - pdflatex $< - pdflatex $< - while ( grep -q '^LaTeX Warning: Label(s) may have changed' $*.log) \ - do pdflatex $<; done - - -.PRECIOUS: $(PACKAGE).cfg $(PACKAGE).cls - - -clean: - $(RM) *.log *.aux *.spl \ - *.cfg *.glo *.idx *.toc \ - *.ilg *.ind *.out *.lof \ - *.lot *.bbl *.blg *.gls \ - *.dvi *.ps *.hd *.rpi *.notes - -distclean: clean - $(RM) $(PDF) $(PACKAGE).cls - -# -# Archive for the distribution. Includes typeset documentation -# -archive: all clean - tar -C .. -czvf $(PACKAGE).tgz --exclude '*~' --exclude '*.tgz' --exclude CVS $(PACKAGE)
\ No newline at end of file diff --git a/Master/texmf-dist/doc/latex/afparticle/README b/Master/texmf-dist/doc/latex/afparticle/README deleted file mode 100644 index 1ad4a0d3cb3..00000000000 --- a/Master/texmf-dist/doc/latex/afparticle/README +++ /dev/null @@ -1,14 +0,0 @@ - Typesetting Articles for Archives of Forensic Psychology - -This package provides a class for typesetting articles for the open -access journal Archives of Forensic Psychology, -http://www.archivesofforensicpsychology.com. - -Changes: - - v1.3 Corrected more typos in the masthead - - v1.2 Corrected typos in the masthead - - v1.1 Suppressed hyphenation - diff --git a/Master/texmf-dist/doc/latex/afparticle/afparticle.pdf b/Master/texmf-dist/doc/latex/afparticle/afparticle.pdf Binary files differdeleted file mode 100644 index 26cbfa1f96e..00000000000 --- a/Master/texmf-dist/doc/latex/afparticle/afparticle.pdf +++ /dev/null diff --git a/Master/texmf-dist/doc/latex/afparticle/afpsample.bib b/Master/texmf-dist/doc/latex/afparticle/afpsample.bib deleted file mode 100644 index 27561a65b3c..00000000000 --- a/Master/texmf-dist/doc/latex/afparticle/afpsample.bib +++ /dev/null @@ -1,1213 +0,0 @@ -@Article{Haidt07, - author = {Jonathan Haidt}, - title = {The New Synthesis in Moral Psychology}, - journal = {Science}, - year = 2007, - volume = 316, - pages = {998--1002}, - annote = {People are selfish, yet morally motivated. Morality is -universal, yet culturally variable. Such apparent contradictions are -dissolving as research from many disciplines converges on a few shared -principles, including the importance of moral intuitions, the socially -functional (rather than truth-seeking) nature of moral thinking, and -the coevolution of moral minds with cultural practices and -institutions that create diverse moral communities. I propose a fourth -principle to guide future research: Morality is about more than harm -and fairness. More research is needed on the collective and religious -parts of the moral domain, such as loyalty, authority, and spiritual -purity.} -} - -@article{DeMarzo05, - type={Working Paper Series}, - title={{Relative Wealth Concerns and Technology Bubbles}}, - author={Demarzo, Peter M. and Kaniel, Ron and Kremer, Ilan }, - journal={SSRN eLibrary}, - year=2005, - publisher={SSRN}, - keywords={Bubble, technology, relative wealth, Joneses, herding, over-investment}, - location={http://ssrn.com/paper=668137}, - note={\url{http://ssrn.com/paper=668137}}, - language={English} -} - - -@article{Arrow63, - jstor_articletype = {primary_article}, - title = {Uncertainty and the Welfare Economics of Medical Care}, - author = {Arrow, Kenneth J.}, - journal = {The American Economic Review}, - jstor_issuetitle = {}, - volume = {53}, - number = {5}, - jstor_formatteddate = {Dec., 1963}, - pages = {941--973}, - url = {http://www.jstor.org/stable/1812044}, - ISSN = {00028282}, - abstract = {}, - language = {}, - year = {1963}, - publisher = {American Economic Association}, - copyright = {Copyright ¿ 1963 American Economic Association}, - } - -@Article{CluttonBrock09:Cooperation, - author = {Tim Clutton-Brock}, - title = {Cooperation Between Non-Kin in Animal Societies}, - journal = {Nature}, - year = 2009, - volume = 462, - pages = {51--57}, - annote = {Explanations of cooperation between non-kin in animal - societies often suggest that individuals exchange resources or - services and that cooperation is maintained by reciprocity. But do - cooperative interactions between unrelated individuals in non-human - animals really resemble exchanges or are they a consequence of - simpler mechanisms? Firm evidence of reciprocity in animal societies - is rare and many examples of cooperation between non-kin probably - represent cases of intra-specific mutualism or manipulation.} -} - - - -@article{Henrich10:MarketsReligionFairness, -author = {Henrich, Joseph and Ensminger, Jean and - McElreath, Richard and Barr, Abigail and - Barrett, Clark and Bolyanatz, Alexander and - Cardenas, Juan Camilo and Gurven, Michael and - Gwako, Edwins and Henrich, Natalie and - Lesorogol, Carolyn and Marlowe, Frank and - Tracer, David and Ziker, John}, -title = {Markets, Religion, Community Size, - and the Evolution of Fairness and Punishment}, -journal = {Science}, -volume = {327}, -number = {5972}, -pages = {1480--1484}, -doi = {10.1126/science.1182238}, -year = {2010}, -abstract = {Large-scale societies in which strangers regularly engage -in mutually beneficial transactions are puzzling. The evolutionary -mechanisms associated with kinship and reciprocity, which underpin -much of primate sociality, do not readily extend to large unrelated -groups. Theory suggests that the evolution of such societies may have -required norms and institutions that sustain fairness in ephemeral -exchanges. If that is true, then engagement in larger-scale -institutions, such as markets and world religions, should be -associated with greater fairness, and larger communities should punish -unfairness more. Using three behavioral experiments administered -across 15 diverse populations, we show that market integration -(measured as the percentage of purchased calories) positively covaries -with fairness while community size positively covaries with -punishment. Participation in a world religion is associated with -fairness, although not across all measures. These results suggest that -modern prosociality is not solely the product of an innate psychology, -but also reflects norms and institutions that have emerged over the -course of human history.}, -eprint = {http://www.sciencemag.org/cgi/reprint/327/5972/1480.pdf} -} - -@article{Hoff10, -author = {Hoff, Karla}, -title = {Fairness in Modern Society}, -journal = {Science}, -volume = {327}, -number = {5972}, -pages = {1467--1468}, -doi = {10.1126/science.1188537}, -year = {2010}, -eprint = {http://www.sciencemag.org/cgi/reprint/327/5972/1467.pdf} -} - - -@article{Woolley10012010, -author = {Woolley, Anita Williams and Chabris, Christopher F. - and Pentland, Alexander and Hashmi, Nada and Malone, Thomas W.}, -title = {Evidence for a Collective Intelligence Factor in the - Performance of Human Groups}, -journal = {Science}, -pages = {science.1193147}, -doi = {10.1126/science.1193147}, -year = {2010}, -abstract = {Psychologists have repeatedly shown that a single -statistical factor--often called "general intelligence"--emerges from -the correlations among people's performance on a wide variety of -cognitive tasks. But no one has systematically examined whether a -similar kind of "collective intelligence" exists for groups of -people. In two studies with 699 individuals, working in groups of two -to five, we find converging evidence of a general collective -intelligence factor that explains a group's performance on a wide -variety of tasks. This "c factor" is not strongly correlated with the -average or maximum individual intelligence of group members but is -correlated with the average social sensitivity of group members, the -equality in distribution of conversational turn-taking, and the -proportion of females in the group.}, -} - - -@article{Stapel08042011, - author = {Stapel, Diederik A. and Lindenberg, Siegwart}, - title = {Coping with Chaos: How Disordered Contexts Promote - Stereotyping and Discrimination}, - volume = 332, - number = 6026, - pages = {251--253}, - year = 2011, - doi = {10.1126/science.1201068}, - abstract ={Being the victim of discrimination can have serious - negative health- and quality-of-life–related - consequences. Yet, could being discriminated against depend on such - seemingly trivial matters as garbage on the streets? In this study, - we show, in two field experiments, that disordered contexts (such as - litter or a broken-up sidewalk and an abandoned bicycle) indeed - promote stereotyping and discrimination in real-world situations - and, in three lab experiments, that it is a heightened need for - structure that mediates these effects (number of subjects: between - 40 and 70 per experiment). These findings considerably advance our - knowledge of the impact of the physical environment on stereotyping - and discrimination and have clear policy implications: Diagnose - environmental disorder early and intervene immediately.}, - eprint = {http://www.sciencemag.org/content/332/6026/251.full.pdf}, - journal = {Science} -} - -@article{Freeman01:Libertarians, - title = {Illiberal Libertarians: - Why Libertarianism Is Not a Liberal View}, - author = {Freeman, Samuel}, - journal = {Philosophy & Public Affairs}, - volume = 30, - number = 2, - jstor_formatteddate = {Spring, 2001}, - pages = {105--151}, - url = {http://www.jstor.org/stable/3557960}, - ISSN = 00483915, - language = {English}, - year = 2001, - publisher = {Blackwell Publishing}, - copyright = {Copyright ¿ 2001 Princeton University Press}, -} - -@Article{Zintzaras10, - author = {Zintzaras, Elias and Santos, Mauro and - Szathmary, Eors}, - title = {Selfishness Versus Functional Cooperation in a Stochastic - Protocell Model}, - journal = {Journal of Theoretical Biolology}, - year = 2010, - volume = 267, - pages = {605--613}, - annote = {How to design an evolvable artificial system capable to - Increase in complexity? Although Darwin s theory of evolution by - natural selection obviously offers a firm foundation little hope of - success seems to be expected from the explanatory adequacy of - modern evolutionary theory which does a good job at explaining what - has already happened but remains practically helpless at predicting - what will occur However the study of the major transitions in - evolution clearly suggests that Increases in complexity have - occurred on those occasions when the conflicting interests between - competing individuals were partly subjugated This immediately - raises the issue about levels of selection in evolutionary biology - and the idea that multi-level selection scenarios are required for - complexity to emerge After analyzing the dynamical behaviour of - competing replicators within compartments we show here that a - proliferation of differentiated catalysts and/or improvement of - catalytic efficiency of ribozymes can potentially evolve in - properly designed artificial cells where the strong internal - competition between the different species of replicators is - somewhat prevented (i e by choosing them with equal probability) - Experimental evolution in these systems will likely stand as - beautiful examples of artificial adaptive systems and will provide - new insights to understand possible evolutionary paths to the - evolution of metabolic complexity (C) 2010 Elsevier Ltd All rights - reserved} -} - -@Article{Boza10, - author = {Boza, Gergely and Szamado, Szabolcs}, - title = {Beneficial Laggards: Multilevel Selection, - Cooperative Polymorphism and - Division of Labour in {T}hreshold {P}ublic {G}ood {G}ames}, - journal = {BMC Evol. Biol.}, - year = 2010, - volume = 10, - pages = {Article~336}, - annote = {Background: The origin and stability of cooperation is - a hot topic in social and behavioural sciences. A complicated - conundrum exists as defectors have an advantage over cooperators, - whenever cooperation is costly so consequently, not cooperating - pays off. In addition, the discovery that humans and some animal - populations, such as lions, are polymorphic, where cooperators and - defectors stably live together - while defectors are not being - punished-, is even more puzzling. Here we offer a novel explanation - based on a Threshold Public Good Game (PGG) that includes the - interaction of individual and group level selection, where - individuals can contribute to multiple collective actions, in our - model group hunting and group defense. Results: Our results show - that there are polymorphic equilibria in Threshold PGGs; that - multi-level selection does not select for the most cooperators per - group but selects those close to the optimum number of cooperators - (in terms of the Threshold PGG). In particular for medium cost - values division of labour evolves within the group with regard to - the two types of cooperative actions (hunting - vs. defense). Moreover we show evidence that spatial population - structure promotes cooperation in multiple PGGs. We also - demonstrate that these results apply for a wide range of non-linear - benefit function types. Conclusions: We demonstrate that - cooperation can be stable in Threshold PGG, even when the - proportion of so called free riders is high in the population. A - fundamentally new mechanism is proposed how laggards, individuals - that have a high tendency to defect during one specific group - action can actually contribute to the fitness of the group, by - playing part in an optimal resource allocation in Threshold Public - Good Games. In general, our results show that acknowledging a - multilevel selection process will open up novel explanations for - collective actions.} -} - -@Article{Rainey10, - author = {Rainey, Paul B. and Kerr, Benjamin}, - title = {Cheats as First Propagules: A New Hypothesis for the - Evolution of Individuality During the Transition from - Single Cells to Multicellularity}, - journal = {Bioessays}, - year = 2010, - volume = 32, - pages = {872--880}, - annote = {The emergence of individuality during the evolutionary - transition from single cells to multicellularity poses a range of - problems. A key issue is how variation in lower-level individuals - generates a corporate (collective) entity with Darwinian - characteristics. Of central importance to this process is the - evolution of a means of collective reproduction, however, the - evolution of a means of collective reproduction is not a trivial - issue, requiring careful consideration of mechanistic - details. Calling upon observations from experiments, we draw - attention to proto-life cycles that emerge via unconventional - routes and that transition, in single steps, individuality to - higher levels. One such life cycle arises from conflicts among - levels of selection and invokes cheats as a primitive germ line: it - lays the foundation for collective reproduction, the basis of a - self-policing system, the selective environment for the emergence - of development, and hints at a plausible origin for a soma/germ - line distinction.} } - - -@Article{Pigliucci10, - author = {Pigliucci, Massimo}, - title = {Okasha's Evolution and the Levels of Selection: - Toward a Broader - Conception of Theoretical Biology}, - journal = {Biol. Philos.}, - year = 2010, - volume = 25, - pages = {405--415}, - annote = {The debate about the levels of selection has been one - of the most controversial both in evolutionary biology and in - philosophy of science. Okasha's book makes the sort of - contribution that simply will not be able to be ignored by anyone - interested in this field for many years to come. However, my - interest here is in highlighting some examples of how Okasha goes - about discussing his material to suggest that his book is part of - an increasingly interesting trend that sees scientists and - philosophers coming together to build a broadened concept of - "theory" through a combination of standard mathematical treatments - and conceptual analyses. Given the often contentious history of the - relationship between philosophy and science, such trend cannot but - be welcome.} -} - -@Article{Okasha09, - author = {Okasha, Samir}, - title = {Individuals, Groups, Fitness and Utility: - Multi-Level Selection Meets Social Choice Theory}, - journal = {Biol. Philos.}, - year = 2009, - volume = 24, - pages = {561--584}, - annote = {In models of multi-level selection, the property of - Darwinian fitness is attributed to entities at more than one level - of the biological hierarchy, e. g. individuals and groups. However, - the relation between individual and group fitness is a - controversial matter. Theorists disagree about whether group - fitness should always, or ever, be defined as total (or average) - individual fitness. This paper tries to shed light on the issue by - drawing on work in social choice theory, and pursuing an analogy - between fitness and utility. Social choice theorists have long been - interested in the relation between individual and social utility, - and have identified conditions under which social utility equals - total (or average) individual utility. These ideas are used to shed - light on the biological problem.} -} - -@Article{Pigliucci09, - author = {Pigliucci, Massimo}, - title = {{S}amir {O}kasha: {E}volution and the Levels of Selection}, - journal = {Biol. Philos.}, - year = 2009, - volume = 24, - pages = {551--560}, - annote = {The debate about the levels of selection has been one - of the most controversial both in evolutionary biology and in - philosophy of science. Okasha's book makes the sort of - contribution that simply will not be able to be ignored by anyone - interested in this field for many years to come. However, my - interest here is in highlighting some examples of how Okasha goes - about discussing his material to suggest that his book is part of - an increasingly interesting trend that sees scientists and - philosophers coming together to build a broadened concept of - "theory" through a combination of standard mathematical treatments - and conceptual analyses. Given the often contentious history of the - relationship between philosophy and science, such trend cannot but - be welcome.} -} - -@Article{Egas08, - author = {Egas, Martijn and Riedl, Arno}, - title = {Proc. R. Soc. B.}, - journal = {The Economics of Altruistic Punishment and the Maintenance - of Cooperation}, - year = 2008, - volume = 275, - pages = {871--878}, - annote = {Explaining the evolution and maintenance of cooperation - among unrelated individuals is one of the fundamental problems in - biology and the social sciences. Recent findings suggest that - altruistic punishment is an important mechanism maintaining - cooperation among humans. We experimentally explore the boundaries - of altruistic punishment to maintain cooperation by varying both - the cost and the impact of punishment, using an exceptionally - extensive subject pool. Our results show that cooperation is only - maintained if conditions for altruistic punishment are relatively - favourable: low cost for the punisher and high impact on the - punished. Our results indicate that punishment is strongly governed - by its cost-to-impact ratio and that its effect on cooperation can - be pinned down to one single variable: the threshold level of - free-riding that goes unpunished. Additionally, actual pay-offs are - the lowest when altruistic punishment maintains cooperation, - because the pay-off destroyed through punishment exceeds the gains - from increased cooperation. Our results are consistent with the - interpretation that punishment decisions come from an amalgam of - emotional response and cognitive cost-impact analysis and suggest - that altruistic punishment alone can hardly maintain cooperation - under multi-level natural selection. Uncovering the workings of - altruistic punishment as has been done here is important because it - helps predicting under which conditions altruistic punishment is - expected to maintain cooperation.} -} - -@Article{Helanterae06, - author = {Helanter{\"a}, H.}, - title = {The Unity That Does Not Exist---A Review of - {A.} {B}urt \& {R.} {T}rivers 2006: {G}enes in {C}onflict}, - journal = {J. Evol. Bol.}, - year = 2006, - volume = 19, - pages = {2067--2070}, - annote = {Organisms harbour several genetic elements with the - potential to act selfishly, and thus undermine the fitness of the - organism as a whole. In their book 'Genes in conflict', Austin Burt - and Robert Trivers thoroughly review evolution and molecular - biology of such selfish genetics elements, and set them in a kin - selection framework. In this review I set their views in a larger - multi-level selection framework, and consider potential problems in - the study of selfish genetics elements.} -} - -@Article{Okasha05, - author = {Okasha, Samir}, - title = {Altruism, Group Selection and Correlated Interaction}, - journal = {Brit. J. Phil. Sci.}, - year = 2005, - volume = 56, - pages = {703--725}, - annote = {Group selection is one acknowledged mechanism for the - evolution of altruism. It is well known that for altruism to spread - by natural selection, interactions must be correlated; that is, - altruists must tend to associate with one another. But does group - selection itself require correlated interactions? Two possible - arguments for answering this question affirmatively are - explored. The first is a bad argument, for it rests on a - product/process confusion. The second is a more subtle argument, - whose validity (or otherwise) turns on issues concerning the - meaning of multi-level selection and how it should be modelled. A - cautious defence of the second argument is offered. - 1 Introduction - 2 Multi-level selection and the evolution of altruism - 3 Price's equation and multi-level selection - 4 Contextual analysis and multi-level selection - 5 The neighbour approach - 6 Recapitulation and conclusion.} -} - -@Article{Okasha04, - author = {Okasha, Samir}, - title = {Multi-Level Selection, Covariance and Contextual Analysis}, - journal = {Brit. J. Phil. Sci.}, - year = 2004, - volume = 55, - pages = {481--504}, - annote = {Two alternative statistical approaches to modelling - multi-level selection in nature, both found in the contemporary - biological literature, are contrasted. The simple covariance - approach partitions the total selection differential on a - phenotypic character into within-group and between-group - components, and identifies the change due to group selection with - the latter. The contextual approach partitions the total selection - differential into different components, using multivariate - regression analysis. The two approaches have different implications - for the question of what constitutes group selection and what does - not. I argue that the contextual approach is theoretically - preferable. This has important implications for a number of issues - in the philosophical debate about the levels of selection.} } - - -@Article{Bowles04, - author = {Bowles, Samuel and Gintis, Herbert}, - title = {The Evolution of Strong Reciprocity: Cooperation - in Heterogeneous Populations}, - journal = {Theor. Population Biol.}, - year = 2004, - volume = 65, - pages = {17--28}, - annote = {How do human groups maintain a high level of - cooperation despite a low level of genetic relatedness among group - members? We suggest that many humans have a predisposition to - punish those who violate group-beneficial norms, even when this - imposes a fitness cost on the punisher. Such altruistic punishment - is widely observed to sustain high levels of cooperation in - behavioral experiments and in natural settings. We offer a model - of cooperation and punishment that we call strong reciprocity: - where members of a group benefit from mutual adherence to a social - norm, strong reciprocators obey the norm and punish its violators, - even though as a result they receive lower payoffs than other group - members, such as selfish agents who violate the norm and do not - punish, and pure cooperators who adhere to the norm but free-ride - by never punishing. Our agent-based simulations show that, under - assumptions approximating likely human environments over the - 100,000 years prior to the domestication of animals and plants, the - proliferation of strong reciprocators when initially rare is highly - likely, and that substantial frequencies of all three behavioral - types can be sustained in a population. As a result, high levels of - cooperation are sustained. Our results do not require that group - members be related or that group extinctions occur. (C) 2003 - Published by Elsevier Inc.} } - - -@Article{Gintis03, - author = {Gintis, Herbert}, - title = {The Hitchhiker's Guide to Altruism: Gene-Culture - Coevolution, and the Internalization of Norms}, - journal = {J. Theor. Biol.}, - year = 2003, - volume = 220, - pages = {407--418}, - annote = {An internal norm is a pattern of behavior enforced in - part by internal sanctions, such as shame, guilt and loss of - self-esteem, as opposed to purely external sanctions, such as - material rewards and punishment. The ability to internalize norms - is widespread among humans, although in some so-called - "sociopaths", this capacity is diminished or lacking. Suppose - there is one genetic locus that controls the capacity to - internalize norms. This model shows that if an internal norm is - fitness enhancing, then for plausible patterns of socialization, - the allele for internalization of norms is evolutionarily - stable. This framework can be used to model Herbert Simon's (1990) - explanation of altruism, showing that altruistic norms can - "hitchhike" on the general tendency of internal norms to be - personally fitness-enhancing. A multi-level selection, gene-culture - coevolution argument then explains why individually - fitness-reducing internal norms are likely to be prosocial as - opposed to socially harmful. (C) 2003 Elsevier Science Ltd. All - rights reserved.} } - -@Article{Kerr02, - author = {Kerr, Benjamin and Godfrey-Smith, Peter}, - title = {Individualist and Multi-Level Perspectives on Selection - in Structured Populations}, - journal = {Biol. Philos.}, - year = 2002, - volume = 17, - pages = {477--517}, - annote = {Recent years have seen a renewed debate over the - importance of group selection, especially as it relates to the - evolution of altruism. One feature of this debate has been - disagreement over which kinds of processes should be described in - terms of selection at multiple levels, within and between - groups. Adapting some earlier discussions, we present a - mathematical framework that can be used to explore the exact - relationships between evolutionary models that do, and those that - do not, explicitly recognize biological groups as fitness-bearing - entities. We show a fundamental set of mathematical equivalences - between these two kinds of models, one of which applies a form of - multi-level selection theory and the other being a form of - "individualism." However, we also argue that each type of model can - have heuristic advantages over the other. Indeed, it can be - positively useful to engage in a kind of back-and-forth switching - between two different perspectives on the evolutionary role of - groups. So the position we defend is a "gestalt-switching - pluralism".} } - - -@Article{Kerr02a, - author = {Kerr, Benjamin and Godfrey-Smith, Peter}, - title = {On {P}rice's Equation and Average Fitness}, - journal = {Biol. Philos.}, - year = 2002, - volume = 17, - pages = {551--565}, - annote = {A number of recent discussions have argued that George - Price's equation for representing evolutionary change is a powerful - and illuminating tool, especially in the context of debates about - multiple levels of selection. Our paper dissects Price's equation - in detail, and compares it to another statistical tool: the - calculation and comparison of average fitnesses. The relations - between Price's equation and equations for evolutionary change - using average fitness are closer than is sometimes supposed. The - two approaches achieve a similar kind of statistical summary of one - generation of change, and they achieve this via a similar loss of - information about the underlying fitness structure.} -} - -@Article{Nachtomy02, - author = {Nachtomy, Ohad and Shavit, Ayelet and Smith, Justin}, - title = {Leibnizian Organisms, Nested Individuals, and - Units of Selection}, - journal = {Theory Biosci.}, - year = 2002, - volume = 121, - pages = {205--230}, - annote = {Leibniz developed a new notion of individuality, - according to which individuals are nested one within another, - thereby abandoning the Aristotelian formula at the heart of - substantialist metaphysics, 'one body, one substance'. On this - model, the level of individuality is determined by the degree of - activity, and partly defined by its relations with other - individuals. In this article, we show the importance of this new - notion of individuality for some persisting questions in - theoretical biology. Many evolutionary theorists presuppose a model - of individuality that will eventually reduce to spatiotemporal - mechanisms, and some still look for an exclusive level or function - to determine a unit of selection. In recent years, a number of - alternatives to these exclusive approaches have emereged, and no - consensus can be foreseen. It is for this reason that we propose - the model of nested individuals. This model supports pluralistic - multi-level selection and rejects an exclusive level or function - for a unit of selection. Since activity is essential to the unity - of an individual, this model focuses on integrating processes of - interaction and replication instead of choosing between them. In - addition, the model of nested individuals may also be seen as a - distinct perspective among the various alternative models for the - unit of selection. This model stresses activity and pluralism: it - accepts simultaneuous co-existence of individuals at different - levels, nested one within the other. Our aim in this article is to - show now a chapter of the history of metaphysics may be fruitfully - brought to bear on the current debate over the unit of selection in - evolutionary biology.} } - -@Article{Canals98, - author = {Canals, Jos{\'e} and Vega-Redondo, Fernando}, - title = {Multi-Level Evolution in Population Games}, - journal = {Int. J. Game Theory}, - year = 1998, - volume = 27, - pages = {21--35}, - annote = {In this paper, we analyze a generalization of the - evolutionary model of Kandori, Mailath, & Rob (1993) where the - population is partitioned into groups and evolution takes place "in - parallel" at the following two levels: (i) within groups, at the - lower level; among groups, at the higher one. Unlike in their - context, efficiency considerations always overcome those of - risk-dominance in the process of selecting the long-run - equilibrium. This provides an explicitly dynamic basis for a - conclusion reminiscent of those put forward in the biological - literature by the so-called theories group selection. From a - normative viewpoint, it suggests the potential importance of - "decentralization", here understood as local and independent - interaction.} } - -@Article{Simon10, - author = {Simon, Burton}, - title = {A Dynamical Model of Two-Level Selection}, - journal = {Evol. Ecol. Res.}, - year = 2010, - volume = 12, - pages = {555--588}, - annote = {Question: How do continuous-time evolutionary - trajectories of two-level - selection behave? - Approach: Construct and solve a dynamical model of two-level selection - capable of predicting evolutionary trajectories and equilibrium - configurations. - Mathematical methods: Evolutionary birth-death processes, simulation, - large population asymptotics, numerical solutions of hyperbolic PDEs. - Key assumptions: Environment composed of distinct groups of individuals. - Individuals' birth and death rates are differentiable functions of the - state of the environment. Groups' fissioning and extinction rates are - integrable functions of the state of the environment. - Main results: A continuous-time, discrete-state, stochastic model of - two-level selection that can be simulated exactly. A continuous-time, - continuous-state, deterministic (PDE) model of two-level selection that - can be solved numerically. A mathematical connection between the - stochastic and deterministic models. Equilibrium configurations of the - environment in models of the evolution of cooperation by two-level - selection often consist of complicated mixtures of groups of varying - sizes, ages, and levels of cooperation.} -} - -@Article{Goodnight11, - author = {Goodnight, Charles J.}, - title = {Evolution in Metacommunities}, - journal = {Phil. Trans. R. Soc. B}, - year = 2011, - volume = 366, - pages = {1401--1409}, - annote = {A metacommunity can be defined as a set of communities - that are linked by migration, and extinction and recolonization. In - metacommunities, evolution can occur not only by processes that - occur within communities such as drift and individual selection, - but also by among-community processes, such as divergent selection - owing to random differences among communities in species - composition, and group and community-level selection. The effect of - these among-community-level processes depends on the pattern of - migration among communities. Migrating units may be individuals - (migrant pool model), groups of individuals (single-species - propagule pool model) or multi-species associations (multi-species - propagule pool model). The most interesting case is the - multi-species propagule pool model. Although this pattern of - migration may a priori seem rare, it becomes more plausible in - small well-defined 'communities' such as symbiotic associations - between two or a few species. Theoretical models and experimental - studies show that community selection is potentially an effective - evolutionary force. Such evolution can occur either through genetic - changes within species or through changes in the species - composition of the communities. Although laboratory studies show - that community selection can be important, little is known about - how important it is in natural populations.} } - -@Article{Nunney85a, - author = {Len Nunney}, - title = {Group Selection, Altruism, and Structured-Deme Models}, - journal = {American Naturalist}, - year = 1985, - volume = 126, - pages = {212--230} -} - - -@Article{Nunney85b, - author = {Len Nunney}, - title = {Female-Biased Sex Ratios: Individual or Group Selection?}, - journal = {Evolution}, - year = 1985, - volume = 39, - pages = {349--361} -} - -@Article{Lion11, - author = {S{\'e}bastien Lion and Vincent A. A. Jansen and Troy Day}, - title = {Evolution in Structured Populations: - Beyond the Kin Versus Group Debate}, - journal = {Trends Ecol. Evol.}, - year = 2011, - volume = 26, - pages = {193--201}, - annote = {Much of the literature on social evolution is pervaded -by the old debate about the relative merits of kin and group -selection. In this debate, the biological interpretation of processes -occurring in real populations is often conflated with the mathematical -methodology used to describe these processes. Here, we highlight the -distinction between the two by placing this discussion within the -broader context of evolution in structured populations. In this review -we show that the current debate overlooks important aspects of the -interplay between genetic and demographic structuring, and argue that -a continued focus on the relative merits of kin versus group selection -distracts attention from moving the field forward.} } - -@Article{Leigh09, - author = {Leigh, E. G., Jr.}, - title = {The Group Selection Controversy}, - journal = {J. Evol. Biol.}, - year = 2009, - volume = 23, - pages = {6--19}, - annote = {Many thought Darwinian natural selection could not -explain altruism. This error led Wynne-Edwards to explain sustainable -exploitation in animals by selection against overexploiting -groups. Williams riposted that selection among groups rarely overrides -within-group selection. Hamilton showed that altruism can evolve -through kin selection. How strongly does group selection influence -evolution? Following Price, Hamilton showed how levels of selection -interact: group selection prevails if Hamilton's rule applies. Several -showed that group selection drove some major evolutionary -transitions. Following Hamilton's lead, Queller extended Hamilton's -rule, replacing genealogical relatedness by the regression on an -actor's genotypic altruism of interacting neighbours' phenotypic -altruism. Price's theorem shows the generality of Hamilton's rule. All -instances of group selection can be viewed as increasing inclusive -fitness of autosomal genomes. Nonetheless, to grasp fully how -cooperation and altruism evolve, most biologists need more concrete -concepts like kin selection, group selection and selection among -individuals for their common good. } } - -@Article{Platt09, - author = {Thomas G. Platt and James D. Bever}, - title = {Kin Competition and the Evolution - of Cooperation}, - journal = {Trends Ecol. Evol.}, - year = 2009, - volume = 24, - pages = {370--377}, - annote = {Kin and multilevel selection theories predict that -genetic structure is required for the evolution of -cooperation. However, local competition among relatives can limit -cooperative benefits, antagonizing the evolution of cooperation. We -show that several ecological factors determine the extent to which kin -competition constrains cooperative benefits. In addition, we argue -that cooperative acts that expand local carrying capacity are less -constrained by kin competition than other cooperative traits, and are -therefore more likely to evolve. These arguments are particularly -relevant to microbial cooperation, which often involves the production -of public goods that promote population expansion. The challenge now -is to understand how an organism's ecology influences how much -cooperative groups contribute to future generations and thereby the -evolution of cooperation.} } - -@Article{Rankin07, - author = {Daniel J. Rankin and Katja Bargum and Hanna Kokko}, - title = {The Tragedy of the Commons in - Evolutionary Biology}, - journal = {Trends Ecol. Evol.}, - year = 2007, - volume = 22, - pages = {643--651}, - annote = {Garrett Hardin's tragedy of the commons is an analogy -that shows how individuals driven by self-interest can end up -destroying the resource upon which they all depend. The proposed -solutions for humans rely on highly advanced skills such as -negotiation, which raises the question of how non-human organisms -manage to resolve similar tragedies. In recent years, this question -has promoted evolutionary biologists to apply the tragedy of the -commons to a wide range of biological systems. Here, we provide tools -to categorize different types of tragedy and review different -mechanisms, including kinship, policing and diminishing returns that -can resolve conflicts that could otherwise end in tragedy. A central -open question, however, is how often biological systems are able to -resolve these scenarios rather than drive themselves extinct through -individual-level selection favouring self-interested behaviours.} } - -@Article{Taylor07:Dilemma, - author = {Christine Taylor and Martin A. Nowak}, - title = {Transforming the Dilemma}, - journal = {Evolution}, - year = 2007, - volume = 61, - pages = {2281--2292}, - annote = {How does natural selection lead to cooperation between -competing individuals ? The Prisoner's Dilemma captures the essence of -this problem. Two players can either cooperate or defect. The payoff -for mutual cooperation, R, is greater than the payoff for mutual -defection, P. But a defector versus a cooperator receives the highest -payoff, T, where as the cooperator obtains the lowest payoff, -S. Hence, the Prisoner's Dilemma is defined by the payoff ranking T > -R > P > S. In a well-mixed population, defectors always have a higher -expected payoff than cooperators, and therefore natural selection -favors defectors. The evolution of cooperation requires specific -mechanisms. Here we discuss five mechanisms for the evolution of -cooperation: direct reciprocity, indirect reciprocity, kin selection, -group selection, and network reciprocity (or graph selection). Each -mechanism leads to a transformation of the Prisoner's Dilemma payoff -matrix. From the transformed matrices, we derive the fundamental -conditions for the evolution of cooperation. The transformed matrices -can be used in standard frameworks of evolutionary dynamics such as -the replicator equation or stochastic processes of game dynamics in -finite populations.} } - -@Article{West07, - author = {Stuart A. West and Stephen P. Diggle and Angus Buckling - and Andy Gardner and Ashleigh S. Griffin}, - title = {The Social Lives of Microbes}, - journal = {Ann. Rev. Evol. Ecol. Systematics}, - year = 2007, - volume = 38, - pages = {53--77}, - annote = {Our understanding of the social lives of microbes has been - revolutionized over the past 20 years. It used to be assumed that - bacteria and other microorganisms lived relatively independent - unicellular lives, without the cooperative behaviors that have - provoked so much interest in mammals, birds, and insects. However, a - rapidly expanding body of research has completely overturned this - idea, showing that microbes indulge in a variety of social behaviors - involving complex systems of cooperation, communication, and - synchronization. Work in this area has already provided some elegant - experimental tests of social evolutionary theory, demonstrating the - importance of factors such as relatedness, kin discrimination, - competition between relatives, and enforcement of cooperation. Our - aim here is to review these social behaviors, emphasizing the unique - opportunities they offer for testing existing evolutionary theory as - well as highlighting the novel theoretical problems that they pose.} -} - -@Article{Lehmann06, - author = {L. Lehmann and L. Keller}, - title = {The Evolution of Cooperation and Altruism---A - General Framework and a Classification of Models}, - journal = {J. Evol. Biol.}, - year = 2006, - volume = 19, - pages = {1365--1376}, - annote = {One of the enduring puzzles in biology and the social -sciences is the origin and persistence of intraspecific cooperation -and altruism in humans and other species. Hundreds of theoretical -models have been proposed and there is much confusion about the -relationship between these models. To clarify the situation, we -developed a synthetic conceptual framework that delineates the -conditions necessary for the evolution of altruism and cooperation. We -show that at least one of the four following conditions needs to be -fulfilled: direct benefits to the focal individual performing a -cooperative act; direct or indirect information allowing a better than -random guess about whether a given individual will behave -cooperatively in repeated reciprocal interactions; preferential -interactions between related individuals; and genetic correlation -between genes coding for altruism and phenotypic traits that can be -identified. When one or more of these conditions are met, altruism or -cooperation can evolve if the cost-to-benefit ratio of altruistic and -cooperative acts is greater than a threshold value. The -cost-to-benefit ratio can be altered by coercion, punishment and -policing which therefore act as mechanisms facilitating the evolution -of altruism and cooperation. All the models proposed so far are -explicitly or implicitly built on these general principles, allowing -us to classify them into four general categories.} } - -@Article{Wilson83, - author = {David Sloan Wilson}, - title = {The Group Selection Controversy: History and - Current Status}, - journal = {Ann. Rev. Ecol. Systematics}, - year = 1983, - volume = 14, - pages = {159--187} -} - -@Article{West07a, - author = {S. A. West and A. S. Griffin and A. Gardner}, - title = {Social Semantics: Altruism, Cooperation, Mutualism, - Strong Reciprocity and Group Selection}, - journal = {J. Evol. Biol.}, - year = 2007, - volume = 20, - pages = {415--432}, - annote = {From an evolutionary perspective, social behaviours are -those which have fitness consequences for both the individual that -performs the behaviour, and another individual. Over the last 43 -years, a huge theoretical and empirical literature has developed on -this topic. However, progress is often hindered by poor communication -between scientists, with different people using the same term to mean -different things, or different terms to mean the same thing. This can -obscure what is biologically important, and what is not. The potential -for such semantic confusion is greatest with interdisciplinary -research. Our aim here is to address issues of semantic confusion that -have arisen with research on the problem of cooperation. In -particular, we: (i) discuss confusion over the terms kin selection, -mutualism, mutual benefit, cooperation, altruism, reciprocal altruism, -weak altruism, altruistic punishment, strong reciprocity, group -selection and direct fitness; (ii) emphasize the need to distinguish -between proximate (mechanism) and ultimate (survival value) -explanations of behaviours. We draw examples from all areas, but -especially recent work on humans and microbes. } } - -@Article{Wilson08, - author = {D. S. Wilson}, - title = {Social Semantics: Toward a Genuine Pluralism in the - Study of Social Behaviour}, - journal = {J. Evol. Biol.}, - year = 2008, - volume = 21, - pages = {368--373}, - annote = {Pluralism is the coexistence of equivalent theoretical -frameworks, either because they are historically entrenched or because -they achieve separate insights by viewing the same process in -different ways. A recent article by West et al. [Journal of -Evolutionary Biology (2007) vol. 20, 415-432] attempts to classify the -many equivalent frameworks that have been developed to study the -evolution of social behaviour. This article addresses shortcomings in -the West et al.'s article, especially with respect to multilevel -selection, in a common effort to maximize the benefits of pluralism -while minimizing the semantic costs.} } - -@Article{West08, - author = {S. A. West and A. S. Griffin and A. Gardner}, - title = {Social Semantics: How Useful Has Group Selection Been?}, - journal = {J. Evol. Biol.}, - year = 2008, - volume = 21, - pages = {374--385}, - annote = {In our social semantics review ( J. Evol. Biol., 2007, -415-432), we discussed some of the misconceptions and sources of -confusion associated with group selection. Wilson (2007, this issue) -claims that we made three errors regarding group selection. Here, we -aim to expand upon the relevant points from our review in order to -refute this claim. The last 45 years of research provide clear -evidence of the relative use of the kin and group selection -approaches. Kin selection methodologies are more tractable, allowing -the construction of models that can be applied more easily to specific -biological examples, including those chosen by Wilson to illustrate -the utility of the group selection approach. In contrast, the group -selection approach is not only less useful, but also appears to -frequently have negative consequences by fostering confusion that -leads to wasted effort. More generally, kin selection theory allows -the construction of a unified conceptual overview that can be applied -across all taxa, whereas there is no formal theory of group -selection.} } - -@Article{Hamilton64a, - author = {Hamilton, W. D.}, - title = {The Genetical Evolution of Social Behavior. {I}}, - journal = {J. Theor. Biol.}, - year = 1964, - volume = 7, - pages = {1--16} -} - -@Article{Hamilton64b, - author = {Hamilton, W. D.}, - title = {The Genetical Evolution of Social Behavior. {II}}, - journal = {J. Theor. Biol.}, - year = 1964, - volume = 7, - pages = {17--52} -} - - -@Article{Lion09, - author = {S. Lion and S. Gandon}, - title = {Habitat Saturation and the Spatial Evolutionary Ecology - of Altruism}, - journal = {J. Evol. Biol.}, - year = 2009, - volume = 22, - pages = {1487--1502}, - annote = {Under which ecological conditions should individuals -help their neighbours? We investigate the effect of habitat saturation -on the evolution of helping behaviours in a spatially structured -population. We combine the formalisms of population genetics and -spatial moment equations to tease out the effects of various -physiological (direct benefits and costs of helping) and ecological -parameters (such as the density of empty sites) on the selection -gradient on helping. Our analysis highlights the crucial importance of -demography for the evolution of helping behaviours. It shows that -habitat saturation can have contrasting effects, depending on the form -of competition (direct vs. indirect competition) and on the -conditionality of helping. In our attempt to bridge the gap between -spatial ecology and population genetics, we derive an expression for -relatedness that takes into account both habitat saturation and the -spatial structure of genetic variation. This analysis helps clarify -discrepancies in the results obtained by previous theoretical -studies. It also provides a theoretical framework taking into account -the interplay between demography and kin selection, in which new -biological questions can be explored.} } - -@Article{Wilson77, - author = {David Sloan Wilson}, - title = {Structured Demes and the Evolution of - Group-Advantageous Traits}, - journal = {American Naturalist}, - year = 1977, - volume = 111, - pages = {157--185}, - annote = {1. Most organisms interact with a set of neighbors -smaller than the deme (its trait group). Demes therefore are not only -a population of individuals but also a population of groups -(structured demes). 2. Trait groups vary in their composition. The -minimum variance to be expected is that arising from a binomial -distribution. Most populations have a higher variance than this due to -(a) differential interactions with the environment and (b) the effects -of reproduction inside the trait groups. 3. As a consequence of this -variation, an individual on the average experiences its own "type" in -a greater frequency than actually exists in the deme. Its behaviors -are therefore directed differentially toward fellow types, and this is -the fundamental requirement for the evolution of altruism. 4. Models -are presented for warning cries and other donor-recipient relations, -resource notification, the evolution of prudence in exploitation and -interference competition, and the effect of differential trait-group -extinction. In all cases evolution in structured demes differs from -traditional individual-selection models. Individual selection -corresponds to the case where there is zero variance among trait -groups, that is, complete homogeneity. 5. The "threshold" variance -permitting the evolution of altruism (negative fitness change to the -donor) is that arising from a binomial distribution. As this is the -minimum to be expected in nature, this theory predicts that at least -weakly altruistic behavior should be a common occurrence (but see -[9]). 6. If a population is overexploiting its resource, a decrease in -feeding rate through interference may be selected for given any -trait-group variation. 7. When trait groups are composed entirely of -siblings (i.e., kin groups), the model is mathematically equivalent to -kin selection. 8. As well as increasing population fitness, social -systems may also evolve an "immunity" against group-detrimental -types. 9. If a given group-advantageous effect can be accomplished -through both altruistic and selfish mechanisms, the selfish mechanism -will be selected. A paucity of altruistic behaviors may signify that -it is usually possible to create the same result selfishly--not that -altruism "cannot" be selected for} } - -@Article{Fletcher09, - author = {Jeffrey A. Fletcher and Michael Doebeli}, - title = {A Simple and General Explanation for the - Evolution of Altruism}, - journal = {Proc. Roy. Soc. B}, - year = 2009, - volume = 276, - pages = {13--19}, - annote = {We present a simple framework that highlights the most -fundamental requirement for the evolution of altruism: assortment -between individuals carrying the cooperative genotype and the helping -behaviours of others with which these individuals interact. We -partition the fitness effects on individuals into those due to self -and those due to the \u2018interaction environment\u2019, and show -that it is the latter that is most fundamental to understanding the -evolution of altruism. We illustrate that while kinship or genetic -similarity among those interacting may generate a favourable structure -of interaction environments, it is not a fundamental requirement for -the evolution of altruism, and even suicidal aid can theoretically -evolve without help ever being exchanged among genetically similar -individuals. Using our simple framework, we also clarify a common -confusion made in the literature between alternative fitness -accounting methods (which may equally apply to the same biological -circumstances) and unique causal mechanisms for creating the -assortment necessary for altruism to be favoured by natural -selection.} } - -@Article{Lion09a, - author = {S{\'e}bastien Lion}, - title = {Relatedness in Spatially Structured Populations - with Empty Sites: An Approach Based on Spatial Moment - Equations}, - journal = {J. Theor. Biol.}, - year = 2009, - volume = 260, - pages = {121--131}, - annote = {Taking into account the interplay between spatial -ecological dynamics and selection is a major challenge in evolutionary -ecology. Although inclusive fitness theory has proven to be a very -useful tool to unravel the interactions between spatial genetic -structuring and selection, applications of the theory usually rely on -simplifying demographic assumptions. In this paper, I attempt to -bridge the gap between spatial demographic models and kin selection -models by providing a method to compute approximations for relatedness -coefficients in a spatial model with empty sites. Using spatial moment -equations, I provide an approximation of nearest-neighbour relatedness -on random regular networks, and show that this approximation performs -much better than the ordinary pair approximation. I discuss the -connection between the relatedness coefficients I define and those -used in population genetics, and sketch some potential extensions of -the theory.} } - -@article{Hirose22072011, -author = {Hirose, Shigenori and Benabentos, Rocio and Ho, Hsing-I and Kuspa, Adam and Shaulsky, Gad}, -title = {Self-Recognition in Social Amoebae Is Mediated by Allelic Pairs of Tiger Genes}, -volume = 333, -number = 6041, -pages = {467-470}, -year = 2011, -journal = {Science}, -doi = {10.1126/science.1203903}, -abstract ={Free-living cells of the social amoebae Dictyostelium -discoideum can aggregate and develop into multicellular fruiting -bodies in which many die altruistically as they become stalk cells -that support the surviving spores. Dictyostelium cells exhibit kin -discrimination—a potential defense against cheaters, which -sporulate without contributing to the stalk. Kin discrimination -depends on strain relatedness, and the polymorphic genes tgrB1 and -tgrC1 are potential components of that mechanism. Here, we demonstrate -a direct role for these genes in kin discrimination. We show that a -matching pair of tgrB1 and tgrC1 alleles is necessary and sufficient -for attractive self-recognition, which is mediated by differential -cell-cell adhesion. We propose that TgrB1 and TgrC1 proteins mediate -this adhesion through direct binding. This system is a genetically -tractable ancient model of eukaryotic self-recognition.}, -} - -@Article{Leadbeater11, - author = {Ellouise Leadbeater b*mand Jonathan M. Carruthers - and Jonathan P. Green and Neil S. Rosser - and Jeremy Field}, - title = {Nest Inheritance Is the Missing Source of Direct - Fitness in a Primitively Eusocial Insect}, - journal = {Science}, - year = 2011, - volume = 333, - number = 6044, - pages = {874--876}, - abstract= {Animals that cooperate with nonrelatives represent a -challenge to inclusive fitness theory, unless cooperative behavior is -shown to provide direct fitness benefits. Inheritance of breeding -resources could provide such benefits, but this route to cooperation -has been little investigated in the social insects. We show that nest -inheritance can explain the presence of unrelated helpers in a classic -social insect model, the primitively eusocial wasp Polistes -dominulus. We found that subordinate helpers produced more direct -offspring than lone breeders, some while still subordinate but most -after inheriting the dominant position. Thus, while indirect fitness -obtained through helping relatives has been the dominant paradigm for -understanding eusociality in insects, direct fitness is vital to -explain cooperation in P. dominulus.} } - -@Article{Kiers11, - author = {E. Toby Kiers and Marie Duhamel and Yugandhar Beesetty - and Jerry A. Mensah and Oscar Franken and Erik Verbruggen - and Carl R. Fellbaum and George A. Kowalchuk - and Miranda M. Hart and Alberto Bago and Todd M. Palmer - and Stuart A. West and Philippe Vandenkoornhuyse - and Jan Jansa and Heike B\"ucking}, - title = {Reciprocal Rewards Stabilize Cooperation in the - Mycorrhizal Symbiosis}, - journal = {Science}, - year = 2011, - volume = 333, - number = 6044, - pages = {880--882}, - annote = {Plants and their arbuscular mycorrhizal fungal -symbionts interact in complex underground networks involving multiple -partners. This increases the potential for exploitation and defection -by individuals, raising the question of how partners maintain a fair, -two-way transfer of resources. We manipulated cooperation in plants -and fungal partners to show that plants can detect, discriminate, and -reward the best fungal partners with more carbohydrates. In turn, -their fungal partners enforce cooperation by increasing nutrient -transfer only to those roots providing more carbohydrates. On the -basis of these observations we conclude that, unlike many other -mutualisms, the symbiont cannot be \u201censlaved.\u201d Rather, the -mutualism is evolutionarily stable because control is bidirectional, -and partners offering the best rate of exchange are rewarded.} } - -@Article{Johnson11:Overconfidence, - author = {Johnson, Dominic D.P. and Fowler, James H.}, - title = {The evolution of Overconfidence}, - journal = {Nature}, - year = 2011, - volume = 477, - number = 7364, - pages = {317--320}, - annote = {Confidence is an essential ingredient of success in a -wide range of domains ranging from job performance and mental health -to sports, business and combat1, 2, 3, 4. Some authors have suggested -that not just confidence but overconfidence\u2014believing you are -better than you are in reality\u2014is advantageous because it serves -to increase ambition, morale, resolve, persistence or the credibility -of bluffing, generating a self-fulfilling prophecy in which -exaggerated confidence actually increases the probability of success3, -4, 5, 6, 7, 8. However, overconfidence also leads to faulty -assessments, unrealistic expectations and hazardous decisions, so it -remains a puzzle how such a false belief could evolve or remain stable -in a population of competing strategies that include accurate, -unbiased beliefs. Here we present an evolutionary model showing that, -counterintuitively, overconfidence maximizes individual fitness and -populations tend to become overconfident, as long as benefits from -contested resources are sufficiently large compared with the cost of -competition. In contrast, unbiased strategies are only stable under -limited conditions. The fact that overconfident populations are -evolutionarily stable in a wide range of environments may help to -explain why overconfidence remains prevalent today, even if it -contributes to hubris, market bubbles, financial collapses, policy -failures, disasters and costly wars9, 10, 11, 12, 13.} } - diff --git a/Master/texmf-dist/doc/latex/afparticle/afpsample.pdf b/Master/texmf-dist/doc/latex/afparticle/afpsample.pdf Binary files differdeleted file mode 100644 index 4ddb997c81c..00000000000 --- a/Master/texmf-dist/doc/latex/afparticle/afpsample.pdf +++ /dev/null diff --git a/Master/texmf-dist/doc/latex/afparticle/afpsample.tex b/Master/texmf-dist/doc/latex/afparticle/afpsample.tex deleted file mode 100644 index da324f40c88..00000000000 --- a/Master/texmf-dist/doc/latex/afparticle/afpsample.tex +++ /dev/null @@ -1,117 +0,0 @@ -\documentclass[1p]{afparticle} -\usepackage{lipsum} -\begin{document} -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Information about the current issue -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Volume -\volumenumber{2} -% Issue -\issuenumber{1} -% Year -\publicationyear{2014} -% Number of the paper in the journal -\papernumber{2} -% First page -\startpage{256} -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Information about the paper -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Title. If necessary, put the short title in the [..] -\title[Research Title]{Unnecessarily Complicated Research Title} -% Authors. The star denotes thecorressponding author -\author*{John Smith} -\address{Department, University, City, State, Country, Phone, E-mail} -\author{Tom F. Johnson} -\address{Department, University, City, State, Country} -\author{Peter Sellers} -\address{Department, University, City, State, Country} -\author{Jay P. Singh} -\address{Department, University, City, State, Country} -% If necessary, redefine \shortauthors -\renewcommand\shortauthors{John Smith et al} -% Abstract -\begin{abstract} - \lipsum[1] -\end{abstract} -% Keywords -\begin{keyword} - One\sep Two\sep Three -\end{keyword} - -% Technical information -% Reception -\received{April 1, 2013} -% Revision; can be repeated -\revised{May 20, 2013} -\revised{June 15, 2013} -% Acceptance -\accepted{July 30, 2013} - -% Making title -\maketitle - -\section{First section} -\lipsum[2] - -% In-text citation -As shown by \citet{Haidt07}, people are selfish, but morally -motivated. See also the work by -\citet{Stapel08042011}. - -% Parenthetical citations -The method in \citep{Zintzaras10} may help. - -\subsection{A subsection} - -\lipsum[4] - -\subsubsection{A subsubsection} - -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% -% TABLE -% -% Put caption before the table. Use booktabs for table -% formatting -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -\begin{table} - \centering - \caption{A sample table} - \label{tab:sample} - \begin{tabular}{lrrr} - \toprule - Item & Units & Cost per unit, \$ & Total cost, \$\\ - \midrule - Stuffed Gnus & 5 & 12.50 & 62.50 \\ - Memory Sticks & 4 & 6.00 & 24.00\\ - \midrule - Total & & & 86.50\\ - \bottomrule - \end{tabular} -\end{table} - - -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% -% FIGURE -% -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -\begin{figure} - \centering - \includegraphics{vitruvian} - \caption{A sample figure} - \label{fig:sample} -\end{figure} - -\lipsum[7-21] - - -% Bibliography -\bibliography{afpsample} -\bibliographystyle{apacite} - -% This should be the last command -\printbackmatter - -\end{document} diff --git a/Master/texmf-dist/doc/latex/afparticle/vitruvian.jpg b/Master/texmf-dist/doc/latex/afparticle/vitruvian.jpg Binary files differdeleted file mode 100644 index 406573b7d0e..00000000000 --- a/Master/texmf-dist/doc/latex/afparticle/vitruvian.jpg +++ /dev/null diff --git a/Master/texmf-dist/source/latex/afparticle/afparticle.dtx b/Master/texmf-dist/source/latex/afparticle/afparticle.dtx deleted file mode 100644 index 6b3e9aa60d4..00000000000 --- a/Master/texmf-dist/source/latex/afparticle/afparticle.dtx +++ /dev/null @@ -1,1069 +0,0 @@ -% \iffalse -%<*gobble> -% $Id: afparticle.dtx,v 1.14 2014-12-23 17:13:00 boris Exp $ -% -% Copyright 2014, Boris Veytsman <boris@varphi.com> -% This work may be distributed and/or modified under the -% conditions of the LaTeX Project Public License, either -% version 1.3 of this license or (at your option) any -% later version. -% The latest version of the license is in -% http://www.latex-project.org/lppl.txt -% and version 1.3 or later is part of all distributions of -% LaTeX version 2005/12/01 or later. -% -% This work has the LPPL maintenance status `maintained'. -% -% The Current Maintainer of this work is Boris Veytsman -% -% This work consists of the file afparticle.dtx and the -% derived file afparticle.cls -% -% \fi -% \CheckSum{689} -% -%% \CharacterTable -%% {Upper-case \A\B\C\D\E\F\G\H\I\J\K\L\M\N\O\P\Q\R\S\T\U\V\W\X\Y\Z -%% Lower-case \a\b\c\d\e\f\g\h\i\j\k\l\m\n\o\p\q\r\s\t\u\v\w\x\y\z -%% Digits \0\1\2\3\4\5\6\7\8\9 -%% Exclamation \! Double quote \" Hash (number) \# -%% Dollar \$ Percent \% Ampersand \& -%% Acute accent \' Left paren \( Right paren \) -%% Asterisk \* Plus \+ Comma \, -%% Minus \- Point \. Solidus \/ -%% Colon \: Semicolon \; Less than \< -%% Equals \= Greater than \> Question mark \? -%% Commercial at \@ Left bracket \[ Backslash \\ -%% Right bracket \] Circumflex \^ Underscore \_ -%% Grave accent \` Left brace \{ Vertical bar \| -%% Right brace \} Tilde \~} -% -% \iffalse -% -% -%\section{Identification} -%\label{sec:ident} -% -% We start with the declaration who we are -% \begin{macrocode} -%</gobble> -%<class>\NeedsTeXFormat{LaTeX2e} -%<*gobble> -\ProvidesFile{afparticle.dtx} -%</gobble> -%<class>\ProvidesClass{afparticle} -[2014/12/23 v1.3 Typesetting articles for Archives of Forensic Psychology] -%<*gobble> -% \end{macrocode} -% -% -% \fi -% -%\iffalse -% \begin{macrocode} -\documentclass{ltxdoc} -\usepackage{array} -\usepackage{url} -\usepackage{hypdoc} -\hypersetup{breaklinks,colorlinks,linkcolor=black,citecolor=black, - pagecolor=black,urlcolor=black,hyperindex=false} -\PageIndex -\CodelineIndex -\RecordChanges -\EnableCrossrefs -\begin{document} - \DocInput{afparticle.dtx} -\end{document} -% \end{macrocode} -%</gobble> -%<*class> -% \fi -% \MakeShortVerb{|} -% \GetFileInfo{afparticle.dtx} -% \title{Typesetting Articles for \emph{Archives of Forensic Psychology}\thanks{\copyright 2014, Boris Veytsman}} -% \author{Boris Veytsman\thanks{% -% \href{mailto:borisv@lk.net}{\texttt{borisv@lk.net}}, -% \href{mailto:boris@varphi.com}{\texttt{boris@varphi.com}}}} -% \date{\filedate, \fileversion} -% \maketitle -% \begin{abstract} -% This package provides a class for typesetting articles for the -% journal \emph{Archives of Forensic Psychology}, -% \url{http://www.archivesofforensicpsychology.com}. -% \end{abstract} -% \tableofcontents -% -% \clearpage -% -% -%\section{Introduction} -%\label{sec:intro} -% -% \emph{Archives of Forensic Psychology} is an Open Access journal. -% It is described on its Web -% page\footnote{\url{http://www.archivesofforensicpsychology.com}} in -% the following way: -% \begin{quotation} -% Archives of Forensic Psychology (AFP) is an innovative, -% peer-reviewed journal published twice per year. Our mission is to -% link the science and practice of forensic psychology, by making -% research and clinical resources freely available to all mental -% health, correctional, and legal professionals. AFP welcomes -% empirical research, book and instrument reviews, case studies, -% commentaries, literature reviews, and policy -% recommendations. Particularly encouraged is the submission of -% non-significant results as well as the findings of government -% reports, conference presentations, Master's theses, and -% doctoral dissertations. -% \end{quotation} -% -% The class |afparticle| is based on the |elsarticle| -% class~\cite{elsarticle} with the following changes: -% \begin{enumerate} -% \item Some formatting changes: unnumbered sections and paragraphs -% and others. -% \item A different formatting of the title page. -% \item Creation of the special file with the metadata used for the -% Crossref submission. -% \item Consistent use of APA~6 citation style. -% \end{enumerate} -% Most of these changes should be transparent for the user; in the -% next section we discuss the user-visible ones in more detail. -% -% -%\section{User Manual} -%\label{sec:manual} -% -% The user should consult the manual of -% |elsarticle|~\cite{elsarticle}; below we describe only the features -% different for |afparticle| class. -% -%\subsection{Invocation} -%\label{sec:invocation} -% -% -% To use the class put in the preamble of your document -% \begin{verbatim} -% \documentclass{afparticle} -% \end{verbatim} -% The class supports the same options as |elsarticles| with the -% following restrictions: -% \begin{enumerate} -% \item Options |3p| and |5p| are suppressed. The -% journal uses only |1p| one-column design. Use options |preprint| and -% |review| to typeset the article for submission, and |1p| for the -% final typesetting. -% \item Options |authoryear|, |number|, |sort&compress| are -% suppressed. The journal uses |apacite| package~\cite{Meijer:Apacite} for the -% bibliography (see below). -% \end{enumerate} -% -% -% To add line numbers to the manuscript, use -% \begin{verbatim} -% \usepackage{lineno} -% \end{verbatim} -% and then either -% \begin{verbatim} -% \begin{linenumbers} -% ... -% \end{linenumbers} -% \end{verbatim} -% or the global command -% \begin{verbatim} -% \linenumbers -% \end{verbatim} -% -% -%\subsection{Front Matter} -%\label{sec:ug:frontmatter} -% -% \DescribeMacro{\maketitle} -% Unlike |elsartclass|, |afparticle| does \emph{not} usesthe -% environment |frontmatter|. Instead, use \cs{maketitle} like you do -% in the standard \LaTeX\ article. -% -% \emph{Archives of Forensic Psychology} normally uses the -% ``second type of frontmatter coding''~\cite{elsarticle}: the authors -% with the same affiliation are grouped together, and the affiliation -% follows the group. -% -% \DescribeMacro{\tnoteref} -% \DescribeMacro{\corref} -% \DescribeMacro{\fnref} -% As different from |elsarticle|, the frontmatter commands -% \emph{do not allow footnotes inside their arguments.} Thus the commands -% \cs{tnoteref}, \cs{corref}, \cs{fnref} are not allowed and produce -% errors. Please do not use them. -% -% \DescribeMacro{\author*} -% Of course, there should be a way to show the corresponding author of -% the manuscript. For this purpose the command \cs{author} has a -% starred form \cs{author}: -% \begin{verbatim} -% \author*{John Doe} % Corresponding author -% \address{George Mason University, Mailstop 76A12, -% Fairfax, VA, 22030, USA, -% \path{jdoe@gmu.edu}} -% \author{Alexander Hamilton} % Other author -% \address{George Washington University} -% \end{verbatim} -% Please note that the journal requires the corresponding author to -% indicate her full mailing address and e-mail. -% -% \DescribeMacro{\shortauthors} -% \LaTeX\ automatically puts the names of the authors into a running -% head on even pages. Sometimes when the list of authors is too -% large, it does not fit there. In this case put after all -% \cs{author} definitions the line -% \begin{verbatim} -% \renewcommand{\shortauthors}{SHORT LIST} -% \end{verbatim} -% for example, -% \begin{verbatim} -% \renewcommand{\shortauthors}{John Doe et. al.} -% \end{verbatim} -% -% \DescribeMacro{\title} -% Unlike \cs{title} in the standard \LaTeX\ and |elsarticle|, our -% \cs{title} has two arguments: the mandatory one and the optional -% one. The reason is, the class uses title for running heads on odd -% pages. If the title is too long, it may not fit, and then the -% optional argument is used for running heads: -% \begin{verbatim} -% \title{Notes on evidence} % Running head and title coincide -% \title[Notes on evidence]{Some notes on evidence as presented to the -% juries} % Running head and title are different -% \end{verbatim} -% -% \DescribeMacro{\volumenumber} -% \DescribeMacro{\issuenumber} -% \DescribeMacro{\publicationyear} -% \DescribeMacro{\publicationmonth} -% \DescribeMacro{\papernumber} -% \DescribeMacro{\startpage} -% \DescribeMacro{\endpage} -% The macros |\volumenumber|, |\issuenumber|, |\publicationyear|, -% |\publicationmonth|, |\papernumber|, |\startpage|, |\endpage| set up the -% corresponding -% data for the paper, for example: -% \begin{verbatim} -% \volumenumber{88} -% \issuenumber{1--2} -% \publicationyear{2012} -% \publicationmonth{January--February} -% \papernumber{2} -% \startpage{1} -% \endpage{39} -% \end{verbatim} -% Note that if the argument of |\endpage| is empty, \LaTeX{} tries to -% calculate the last page number as best as it can. -% -% \DescribeMacro{\received} -% \DescribeMacro{\revised} -% \DescribeMacro{\accepted} -% The macros \cs{received}\marg{date}, \cs{revised}\marg{date}, -% \cs{accepted}\marg{date} are used by the editorial staff for -% techincal information about the paper. These macros can be -% repeated. -% -% -% \DescribeMacro{\doinumber} -% Normally you do not need to set the DOI of the paper: \TeX{} will -% construct the number using the paper data (including paper number in -% the current issue). However, you \emph{may} override its decision -% using the command |\doinumber| which sets the DOI explicitly, for -% example, |\doinumber|\marg{12.234/afp.2013.01.01}. -% You probably should not use this macro. -% -% \DescribeMacro{\prevpaper} -% Instead of setting |\startpage|, one can use the the command -% |\prevpaper|\marg{previous paper}, with the argument being the -% location and file name of the previous paper in the journal, for example: -% \begin{verbatim} -% \prevpaper{../evidence/rules_of_evidence} -% \end{verbatim} -% Note that the |.tex| suffix should \emph{not} be used. The previous -% paper must be processed by |latex| prior to the current one. In -% this case |latex| will read the last page of the previous paper, and -% start the current one from the proper page number. -% -% -%\subsection{Back matter} -%\label{sec:ug_back} -% -% \DescribeMacro{\printbackmatter} -% The last command of the article must be \cs{printbackmatter}. It -% prints the technical information about the paper. -% -%\subsection{Sectioning} -%\label{sec:ug:sectioning} -% -% The class uses unnumbered sections, subsections and subsubsections. -% Never use period (.) at the end of the title: it is not allowed for -% sections and subsections and is automatically added by -% subsubsectons. -% -% -%\subsubsection{Tables and Figures} -%\label{sec:ug_floats} -% -% You may use tables and figures in the manuscript. Remember that -% table caption must \emph{precede} the table while figure captions -% follow the contents. -% -% -% -%\subsection{Bibliography} -%\label{sec:biblio} -% -% The class uses |apacite|~\cite{Meijer:Apacite} for bibliography with -% |natbibapa| option. The format of the bibliographic commands is -% described in the manuals~\cite{Meijer:Apacite} -% and~\cite{Daly07:Natbib}. Basically you need the commands -% \cs{citet}\marg{key} for textual citations like ``John Doe (2012) wrote -% that\ldots'' and \cs{citep}\marg{key} for parentetical citations -% like ``As shown in the literature (John Doe, 2012)\ldots''. -% -% If you use \textsc{Bib}\TeX, add to your file -% \cs{bibliography}\marg{bibfiles} and |\bibliography{apacite}|. For -% manual bibliographies you must use APA6 citation style. -% -% \StopEventually{\clearpage -% \bibliography{tex} -% \bibliographystyle{unsrt}} -% -% \clearpage -% -% -%\section{Implementation} -%\label{sec:impl} -% -% -% -%\subsection{Auxillary Macros} -%\label{sec:aux} -% -% \begin{macro}{AFP@DisableMacro} -% Some commands are disabled -% \begin{macrocode} -\def\AFP@DisableMacro#1{\ClassError{afparticle}{The macro - \expandafter\protect\csname#1\endcsname\space - is disabled}{The command - \expandafter\protect\csname#1\endcsname\space - is introduced in the - elsarticle class.\MessageBreak It is disabled in afpartcile - class}} -% \end{macrocode} -% -% \end{macro} -% \begin{macro}{\@nx} -% \begin{macro}{\@xp} -% \begin{macro}{\@ifnotempty} -% From |amsart| -% \begin{macrocode} -\let\@xp=\expandafter -\let\@nx=\noexpand -\long\def\@ifempty#1{\@xifempty#1@@..\@nil} -\long\def\@xifempty#1#2@#3#4#5\@nil{% - \ifx#3#4\@xp\@firstoftwo\else\@xp\@secondoftwo\fi} -\long\def\@ifnotempty#1{\@ifempty{#1}{}} -% \end{macrocode} -% -% \end{macro} -% \end{macro} -% \end{macro} -% -% \begin{macro}{\nxandlist} -% This is from |amsart|: -% \begin{macrocode} -\newtoks\@emptytoks -\def\@andlista#1#2\and#3\and{\@andlistc{#2}\@ifnotempty{#3}{% - \@andlistb#1{#3}}} -\def\@andlistb#1#2#3#4#5\and{% - \@ifempty{#5}{% - \@andlistc{#2#4}% - }{% - \@andlistc{#1#4}\@andlistb{#1}{#3}{#3}{#5}% - }} -\let\@andlistc\@iden -\newcommand{\nxandlist}[4]{% - \def\@andlistc##1{\toks@\@xp{\the\toks@##1}}% - \toks@{\toks@\@emptytoks \@andlista{{#1}{#2}{#3}}}% - \the\@xp\toks@#4\and\and - \edef#4{\the\toks@}% - \let\@andlistc\@iden} -% \end{macrocode} -% -% \end{macro} -% \begin{macro}{\@@and} -% The final `and' in the list -% \begin{macrocode} -\def\@@and{and} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\author@andify} -% Again |amsart| -% \begin{macrocode} -\def\author@andify{% - \nxandlist {\unskip ,\penalty-1 \space\ignorespaces}% - {\unskip {} \@@and~}% - {\unskip ,\penalty-2 \space\@@and~}% -} -% \end{macrocode} -% -% \end{macro} -% -% -%\subsection{Options} -%\label{sec:options} -% -% We use |xkeyval|: right now our options do not have values, but we -% may change this. -% \begin{macrocode} -\RequirePackage{xkeyval} -% \end{macrocode} -% -% \begin{macro}{AFP@OptionWarning} -% We disable some options and issue a warning: -% \begin{macrocode} -\def\AFP@OptionWarning#1{\ClassWarning{afparticle}{The option #1 is - not used for afparticle. I will silently ignore it}} -% \end{macrocode} -% \end{macro} -% -% -% The suppressed options: -% \begin{macrocode} -\DeclareOptionX{3p}{\AFP@OptionWarning{\CurrentOption}}% -\DeclareOptionX{5p}{\AFP@OptionWarning{\CurrentOption}}% -\DeclareOptionX{authoryear}{\AFP@OptionWarning{\CurrentOption}}% -\DeclareOptionX{number}{\AFP@OptionWarning{\CurrentOption}}% -\DeclareOptionX{sort&compress}{\AFP@OptionWarning{\CurrentOption}}% -% \end{macrocode} -% -% All non-suppressed options are passed to |elsarticle|: -% \begin{macrocode} -\DeclareOptionX*{\PassOptionsToClass{\CurrentOption}{elsarticle}} -% \end{macrocode} -% -% -% And executing options: -% \begin{macrocode} -\ProcessOptionsX -% \end{macrocode} -% -% -%\subsection{Loading Classes and Packages} -%\label{sec:classes} -% -% We want to prevent loading of natbib -% \begin{macrocode} -\@namedef{ver@natbib.sty}{} -\@namedef{opt@natbib.sty}{round,authoryear} -\newlength\bibsep -% \end{macrocode} -% -% We use |elasrticle| since it has nice features for front matter: -% \begin{macrocode} -\LoadClass[1p,authoryear,round]{elsarticle} -% \end{macrocode} -% -% We need |lastpage| for last page calculations, |fancyhdr| for our -% headings, |hyperref| for references and |caption| for caption -% formatting. -% \begin{macrocode} -\RequirePackage{lastpage,fancyhdr} -\RequirePackage{caption} -\RequirePackage{booktabs} -\RequirePackage{graphicx} -\RequirePackage[hyperfootnotes=false,colorlinks,allcolors=blue]{hyperref} -% \end{macrocode} -% -% And now we do want natbib! -% \begin{macrocode} -\expandafter\let\csname ver@natbib.sty\endcsname=\@undefined -\let\bibsep=\@undefined -\RequirePackage[natbibapa]{apacite} -% \end{macrocode} -% -% -%\subsection{Front Matter} -%\label{sec:frontmatter} -% -% \begin{macro}{\abstract} -% We do not use the word ``abstract'' for abstract -\renewenvironment{abstract}{\global\setbox\absbox=\vbox\bgroup - \hsize=\textwidth\def\baselinestretch{1}% - \noindent\unskip\ignorespaces} - {\egroup} -% \end{macro} -% -% \begin{macro}{\tnoteref} -% This macro is disabled. -% \begin{macrocode} -\def\tnoteref#1{\AFP@DisableMacro{tnoteref}} -% \end{macrocode} -% -% \end{macro} -% \begin{macro}{\corref} -% This macro is disabled. -% \begin{macrocode} -\def\corref#1{\AFP@DisableMacro{corref}} -% \end{macrocode} -% -% \end{macro} -% \begin{macro}{\fnref} -% This macro is disabled. -% \begin{macrocode} -\def\fnref#1{\AFP@DisableMacro{fnref}} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\title} -% This is from |amsart|: -% \begin{macrocode} -\renewcommand*{\title}[2][]{\gdef\shorttitle{#1}\gdef\@title{#2}} -\edef\title{\@nx\@dblarg - \@xp\@nx\csname\string\title\endcsname} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\ifAFP@corrauthor} -% This checks whether this author is the coresponding author -% \begin{macrocode} -\newif\ifAFP@corrauthor -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\authors} -% We store in \cs{authors} the list of authors separated by -% \cs{and}. -% \begin{macrocode} -\def\authors{} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\shortauthors} -% Initially we define \cs{shortauthors} as \cs{authors}, but the -% user can redefine it. -% \begin{macrocode} -\def\shortauthors{\authors} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\author} -% First, check whether this author is the corresponding author. -% \begin{macrocode} -\def\author{% - \@ifstar{\AFP@corrauthortrue\AFP@author}{\AFP@corrauthorfalse\AFP@author}} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\AFP@author} -% The macro \cs{AFP@author} is our version of the standard -% \cs{autor} macro -% \begin{macrocode} -\def\AFP@author{\@ifnextchar[{\@@author}{\@author}} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\@@author} -% This typesets an author with some footnotes -% \begin{macrocode} -\def\@@author[#1]#2{% - \ifx\@empty\authors - \gdef\authors{#2}% - \else - \g@addto@macro\authors{\and#2}% - \fi - \g@addto@macro\elsauthors{% - \normalsize\upshape - \def\baselinestretch{1}% - \authorsep#2\unskip}% - \ifAFP@corrauthor - \g@addto@macro\elsauthors{\textsuperscript{$\ast$,}}\fi - \g@addto@macro\elsauthors{% - \textsuperscript{%#1% - \@for\@@affmark:=#1\do{% - \edef\affnum{\@ifundefined{X@\@@affmark}{1}{\elsRef{\@@affmark}}}% - \unskip\sep\affnum\let\sep=,}% - \ifx\@fnmark\@empty\else\unskip\sep\@fnmark\let\sep=,\fi - \ifx\@corref\@empty\else\unskip\sep\@corref\let\sep=,\fi - }% - \def\authorsep{\unskip,\space}% - \global\let\sep\@empty\global\let\@corref\@empty - \global\let\@fnmark\@empty}% - \@eadauthor={#2} -} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\@author} -% No footnote marks after the author: -% \begin{macrocode} -\def\@author#1{% - \ifx\@empty\authors - \gdef\authors{#1}% - \else - \g@addto@macro\authors{\and#1}% - \fi - \g@addto@macro\elsauthors{\normalsize% - \def\baselinestretch{1}% - \upshape\authorsep#1} - \ifAFP@corrauthor - \g@addto@macro\elsauthors{\textsuperscript{$\ast$}}\fi - \g@addto@macro\elsauthors{% - \def\authorsep{\unskip,\space}% - \global\let\@fnmark\@empty - \global\let\sep\@empty}% - \@eadauthor={#1} -} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\@address} -% \changes{v1.0}{2014/08/18}{Added macro} -% We redefine |elsarticle| macro to change the vertical spacing -% \begin{macrocode} -\long\def\@address#1{\g@addto@macro\elsauthors{% - \def\baselinestretch{1}\def\addsep{\par\vskip4pt}% - \addsep\footnotesize\itshape#1% - \def\authorsep{\par\vskip16pt}}} -% \end{macrocode} -% -% \end{macro} -% -% -% The next lines are from |resphilosophica| class -% \begin{macro}{\paperUrl} -% The url to submit to crossref -% \begin{macrocode} -\def\paperUrl#1{\gdef\@paperUrl{#1}} -\paperUrl{} -% \end{macrocode} -% -% \end{macro} -% \begin{macro}{\@mainrpi} -% The stream for the rpi file: -% \begin{macrocode} -\newwrite\@mainrpi -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\RESP@write@paper@info} -% This writes the information about the paper into the file -% |jobname.rpi|. Note that hyperref makes our life a little bit -% more complex -% \begin{macrocode} -\def\RESP@write@paper@info{% - \bgroup - \if@filesw - \openout\@mainrpi\jobname.rpi% - \write\@mainrpi{\relax}% - \ifx\r@LastPage\@undefined - \edef\@tempa{\start@page}% - \else - \def\@tempb##1##2##3##4##5{##2}% - \edef\@tempa{\expandafter\@tempb\r@LastPage}% - \fi - \def\and{\string\and\space}% - \protected@write\@mainrpi{}% - {\string\articleentry{\authors}{\@title}{\start@page}{\@tempa}}% -% \end{macrocode} -% The next lines are for crossref software -% \begin{macrocode} - \protected@write\@mainrpi{}% - {\@percentchar authors=\authors}% - \protected@write\@mainrpi{}% - {\@percentchar title=\@title}% - \protected@write\@mainrpi{}% - {\@percentchar year=\currentyear}% - \protected@write\@mainrpi{}% - {\@percentchar volume=\currentvolume}% - \protected@write\@mainrpi{}% - {\@percentchar issue=\currentissue}% - \protected@write\@mainrpi{}% - {\@percentchar paper=\currentpaper}% - \protected@write\@mainrpi{}% - {\@percentchar startpage=\start@page}% - \protected@write\@mainrpi{}% - {\@percentchar endpage=\@tempa}% - \protected@write\@mainrpi{}% - {\@percentchar doi=\@doinumber}% - \ifx\@paperUrl\@empty\else - \protected@write\@mainrpi{}% - {\@percentchar paperUrl=\@paperUrl}% - \fi - \closeout\@mainrpi - \fi -\egroup} -% \end{macrocode} -% -% \end{macro} -% -% -% \begin{macro}{\maketitle} -% \changes{v1.0}{2014/08/18}{Moved the text down} -% Our macro is simpler than that of |elsarticle|, since we have -% fewer options. -% \begin{macrocode} -\def\maketitle{% - \null\bigskip\par - \iflongmktitle\getSpaceLeft - \global\setbox\els@boxa=\vsplit0 to \@tempdima - \box\els@boxa\par\resetTitleCounters - \printFirstPageNotes - \box0% - \else - \finalMaketitle\printFirstPageNotes - \fi - \RESP@write@paper@info - \author@andify\authors - \xdef\authors{\authors}% - \gdef\thefootnote{\arabic{footnote}}% - \thispagestyle{firstpagestyle}% -} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\volumenumber} -% This sets the volume of the paper -% \begin{macrocode} -\def\volumenumber#1{\gdef\currentvolume{#1}} -\volumenumber{} -% \end{macrocode} -% \end{macro} -% \begin{macro}{\issuenumber} -% This sets the issue of the paper: -% \begin{macrocode} -\def\issuenumber#1{\gdef\currentissue{#1}} -\issuenumber{} -% \end{macrocode} -% \end{macro} -% \begin{macro}{\publicationyear} -% This sets the year of the paper -% \begin{macrocode} -\def\publicationyear#1{\gdef\currentyear{#1}} -\publicationyear{} -% \end{macrocode} -% \end{macro} -% \begin{macro}{\publicationmonth} -% This sets the month of the paper -% \begin{macrocode} -\newcommand\publicationmonth[2][]{\gdef\currentmonth{#2}% - \gdef\abbrevcurrentmonth{#1}% - \ifx\abbrevcurrentmonth\@empty\gdef\abbrevcurrentmonth{#2}\fi} -\publicationmonth{} -% \end{macrocode} -% \end{macro} -% -% \begin{macro}{\papernumber} -% This is absent from the |\issueinfo|. -% \begin{macrocode} -\def\papernumber#1{\gdef\currentpaper{#1}} -\papernumber{0000} -% -% \end{macro} -% -% -% \begin{macro}{\doinumber} -% \begin{macrocode} -\def\doinumber#1{\gdef\@doinumber{#1}} -\doinumber{123.4567/archivesforensicpsychology.\currentyear.\currentvolume.\currentissue.\currentpaper} -% \end{macrocode} -% \end{macro} -% -% -% \begin{macro}{\startpage} -% This defines the starting page of the paper. We have some nice -% features to set up roman page numbers for editorial -% stuff---probably not needed for this journal at this time\dots -% \begin{macrocode} -\def\startpage#1{\pagenumbering{arabic}\setcounter{page}{#1}% - \gdef\start@page{#1}% - \ifnum\c@page<\z@ \pagenumbering{roman}\setcounter{page}{-#1}% - \gdef\start@page{\romannumeral#1}% - \fi} -% \end{macrocode} -% \end{macro} -% -% \begin{macro}{\endpage} -% This macro again has a twist in it: if the argument is not set, it -% calculates the last page number itself. -% \begin{macrocode} -\def\endpage#1{\def\@tempa{#1}% - \ifx\@tempa\@empty\def\end@page{\pageref{LastPage}}% - \else\def\end@page{#1}\fi} -% \end{macrocode} -% \end{macro} -% -% \begin{macro}{\pagespan} -% This macro is different from the one provided by |amsart| -% because we want to have the option of automatic calculation of the -% last page number. -% \begin{macrocode} -\def\pagespan#1#2{\startpage{#1}\endpage{#2}} -\pagespan{1}{} -% \end{macrocode} -% \end{macro} -% -% -% \begin{macro}{\articleentry} -% This is necessary for |\prevpaper| command. We read the TOC entry -% from the previous paper and increment it by 1. Note that we -% always start with on an odd page, since the additional check -% \begin{macrocode} -\def\articleentry#1#2#3#4{\@tempcnta=#4\relax - \advance\@tempcnta by 1\relax - \ifodd\the\@tempcnta\else\advance\@tempcnta by 1\relax\fi - \startpage{\the\@tempcnta}} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\prevpaper} -% This sets the previous paper location and reads the information -% from the previous paper -% \begin{macrocode} -\def\prevpaper#1{\IfFileExists{#1.rpi}{% - \ClassInfo{afparticle}{% - Reading first page number from the file #1.rpi}% - \input{#1.rpi}% - }{\ClassWarning{afparticle}{Cannot find the file #1.rpi. - Did you run latex on the previous paper?}}} -% \end{macrocode} -% -% \end{macro} -% -% -%\subsection{Back Matter} -%\label{sec:back} -% -% \begin{macro}{\AFP@backmatter} -% The technical information about the paper. -% \begin{macrocode} -\def\AFP@backmatter{} -% \end{macrocode} -% -% \end{macro} -% \begin{macro}{\received} -% Date of receiving -% \begin{macrocode} -\def\received#1{\g@addto@macro\AFP@backmatter{Received: #1\\}} -% \end{macrocode} -% -% \end{macro} -% \begin{macro}{\revised} -% Date of receiving a revision -% \begin{macrocode} -\def\revised#1{\g@addto@macro\AFP@backmatter{Revision Received: #1\\}} -% \end{macrocode} -% -% \end{macro} -% \begin{macro}{\accepted} -% Date of acceptance -% \begin{macrocode} -\def\accepted#1{\g@addto@macro\AFP@backmatter{Accepted: #1\\}} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macrocode} -% \end{macrocode} -% -% \begin{macro}{\printbackmatter} -% Print the back matter -% \begin{macrocode} -\def\printbackmatter{\ifx\AFP@backmatter\@empty\else\medskip - \begin{flushright}% - \AFP@backmatter - \end{flushright}% -\fi} -% \end{macrocode} -% -% \end{macro} -% -%\subsection{Page styles} -%\label{sec:styles} -% -% In |preprint| mode |elsarticle| uses one side style. We want to -% override this: -% \begin{macrocode} -\AtBeginDocument{\@twosidetrue} -% \end{macrocode} -% -% \begin{macro}{\footskip} -% We want generous \cs{footskip} -% \begin{macrocode} -\setlength\footskip{40\p@} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\headrulewidth} -% \begin{macro}{\footrulewidth} -% We do not want decorative rules in the journal: -% \begin{macrocode} -\renewcommand{\headrulewidth}{0pt} -\renewcommand{\footrulewidth}{0pt} -% \end{macrocode} -% \end{macro} -% \end{macro} -% \begin{macro}{standardpagestyle} -% The page style for all pages but the first one -% \begin{macrocode} -\fancypagestyle{standardpagestyle}{% - \fancyhead{}% - \fancyfoot{}% - \fancyfoot[R]{\thepage}% - \fancyhead[CE]{\scshape\MakeLowercase{\shortauthors}}% - \fancyhead[CO]{\scshape\MakeLowercase{\shorttitle}}% -} -\pagestyle{standardpagestyle} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{firstpagestyle} -% \changes{v1.2}{2014/10/22}{Corrected masthead} -% \changes{v1.3}{2014/12/23}{Corrected another typo in masthead} -% The page style for the first page -% \begin{macrocode} -\fancypagestyle{firstpagestyle}{% - \fancyhead{}% - \fancyfoot{}% - \fancyfoot[R]{\thepage}% - \fancyhead[L]{\small Archives of Forensic Psychology\\ - \currentyear, Vol.~\currentvolume, No.~\currentissue, - \thepage--\end@page}% - \fancyhead[R]{\small\textcopyright~\currentyear\ Global Institute of - Forensic Psychology\\ISSN~2334-2749}% -} -% \end{macrocode} -% \end{macro} -% -% -%\subsection{Paragraphing} -%\label{sec:paras} -% -% \begin{macro}{\parindent} -% We want generous indents -% \begin{macrocode} -\setlength\parindent{2em} -% \end{macrocode} -% -% \end{macro} -% -% -%\subsection{Sectioning} -%\label{sec:sectioning} -% -% \begin{macro}{secnumdepth} -% We do not number sections -% \begin{macrocode} -\setcounter{secnumdepth}{-1} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\section} -% We center our sections: -% \begin{macrocode} -\renewcommand\section{\@startsection {section}{1}{\z@}% - {18\p@ \@plus 6\p@ \@minus 3\p@}% - {9\p@ \@plus 6\p@ \@minus 3\p@}% - {\centering\normalsize\bfseries\boldmath}} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\subsection} -% Our subsections look like sections, but flushed left -% \begin{macrocode} -\renewcommand\subsection{\@startsection {subsection}{2}{\z@}% - {18\p@ \@plus 6\p@ \@minus 3\p@}% - {9\p@ \@plus 6\p@ \@minus 3\p@}% - {\normalsize\bfseries\boldmath}} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\subsubsection} -% Our subsubsections are italicized and written on the same line as -% the text. Also, they end with dots. -% \begin{macrocode} -\renewcommand\subsubsection{\@startsection{subsubsection}{3}{0\z@}% - {0\z@}% - {-6\p@}% - {\normalfont\hspace*{\parindent}\itshape\@addfinaldot}} -% \end{macrocode} -% -% \end{macro} -% -% \begin{macro}{\@addfinaldot} -% Add a dot after a text -% \begin{macrocode} -\def\@addfinaldot#1{#1.} -% \end{macrocode} -% -% \end{macro} -% -% -%\subsection{Floats} -%\label{sec:floats} -% \changes{v1.0}{2014/08/18}{Centered captions} -% Setting up table captions -% \begin{macrocode} -\DeclareCaptionLabelSeparator{periodNewline}{.\\} -\captionsetup[table]{position=top, format=plain, - labelsep=periodNewline, justification=centering, - singlelinecheck=off, font=normalsize, textfont=it} -% \end{macrocode} -% -% Setting up figure captions -% \begin{macrocode} -\captionsetup[figure]{position=bottom, format=plain, - labelsep=period, justification=centering, - singlelinecheck=off, font=normalsize, labelfont=it} -% \end{macrocode} -% -% -%\subsection{Final Words} -%\label{sec:finis} -% -% \changes{v1.1}{2014/10/20}{Added changes requested by the editor and -% implemented by David Latchman, -% david.latchman@texnical-designs.com: no hyphenation throughout the -% entire manuscript} -% -% \begin{macrocode} -\tolerance=1 -\emergencystretch=\maxdimen -\hyphenpenalty=10000 -\hbadness=10000 -\normalsize\normalfont -%</class> -% \end{macrocode} -% -%\Finale -%\clearpage -% -%\PrintChanges -%\clearpage -%\PrintIndex -% -\endinput diff --git a/Master/texmf-dist/source/latex/afparticle/afparticle.ins b/Master/texmf-dist/source/latex/afparticle/afparticle.ins deleted file mode 100644 index 3badd737973..00000000000 --- a/Master/texmf-dist/source/latex/afparticle/afparticle.ins +++ /dev/null @@ -1,29 +0,0 @@ -% -% Docstrip file for afparticle -% This file is in public domain -% $Id: afparticle.ins,v 1.1 2014-07-16 22:18:28 boris Exp $ -% -\def\batchfile{afparticle.ins} -\input docstrip -\keepsilent -\showprogress - - -\askforoverwritefalse - -\generate{% - \file{afparticle.cls}{\from{afparticle.dtx}{class}}} - -\obeyspaces -\Msg{*****************************************************}% -\Msg{* Congratulations! You successfully generated the *}% -\Msg{* afparticle package. *}% -\Msg{* *}% -\Msg{* Please move afparticle.cls to the place for LaTeX *}% -\Msg{* files in your system. The manual is in the file *}% -\Msg{* afparticle.pdf. *}% -\Msg{* *}% -\Msg{* The package is released under LPPL *}% -\Msg{* *}% -\Msg{* Happy TeXing! *}% -\Msg{*****************************************************}%
\ No newline at end of file diff --git a/Master/texmf-dist/tex/latex/afparticle/afparticle.cls b/Master/texmf-dist/tex/latex/afparticle/afparticle.cls deleted file mode 100644 index 37b2b4d04e0..00000000000 --- a/Master/texmf-dist/tex/latex/afparticle/afparticle.cls +++ /dev/null @@ -1,297 +0,0 @@ -%% -%% This is file `afparticle.cls', -%% generated with the docstrip utility. -%% -%% The original source files were: -%% -%% afparticle.dtx (with options: `class') -%% -%% IMPORTANT NOTICE: -%% -%% For the copyright see the source file. -%% -%% Any modified versions of this file must be renamed -%% with new filenames distinct from afparticle.cls. -%% -%% For distribution of the original source see the terms -%% for copying and modification in the file afparticle.dtx. -%% -%% This generated file may be distributed as long as the -%% original source files, as listed above, are part of the -%% same distribution. (The sources need not necessarily be -%% in the same archive or directory.) -\NeedsTeXFormat{LaTeX2e} -\ProvidesClass{afparticle} -[2014/12/23 v1.3 Typesetting articles for Archives of Forensic Psychology] -\def\AFP@DisableMacro#1{\ClassError{afparticle}{The macro - \expandafter\protect\csname#1\endcsname\space - is disabled}{The command - \expandafter\protect\csname#1\endcsname\space - is introduced in the - elsarticle class.\MessageBreak It is disabled in afpartcile - class}} -\let\@xp=\expandafter -\let\@nx=\noexpand -\long\def\@ifempty#1{\@xifempty#1@@..\@nil} -\long\def\@xifempty#1#2@#3#4#5\@nil{% - \ifx#3#4\@xp\@firstoftwo\else\@xp\@secondoftwo\fi} -\long\def\@ifnotempty#1{\@ifempty{#1}{}} -\newtoks\@emptytoks -\def\@andlista#1#2\and#3\and{\@andlistc{#2}\@ifnotempty{#3}{% - \@andlistb#1{#3}}} -\def\@andlistb#1#2#3#4#5\and{% - \@ifempty{#5}{% - \@andlistc{#2#4}% - }{% - \@andlistc{#1#4}\@andlistb{#1}{#3}{#3}{#5}% - }} -\let\@andlistc\@iden -\newcommand{\nxandlist}[4]{% - \def\@andlistc##1{\toks@\@xp{\the\toks@##1}}% - \toks@{\toks@\@emptytoks \@andlista{{#1}{#2}{#3}}}% - \the\@xp\toks@#4\and\and - \edef#4{\the\toks@}% - \let\@andlistc\@iden} -\def\@@and{and} -\def\author@andify{% - \nxandlist {\unskip ,\penalty-1 \space\ignorespaces}% - {\unskip {} \@@and~}% - {\unskip ,\penalty-2 \space\@@and~}% -} -\RequirePackage{xkeyval} -\def\AFP@OptionWarning#1{\ClassWarning{afparticle}{The option #1 is - not used for afparticle. I will silently ignore it}} -\DeclareOptionX{3p}{\AFP@OptionWarning{\CurrentOption}}% -\DeclareOptionX{5p}{\AFP@OptionWarning{\CurrentOption}}% -\DeclareOptionX{authoryear}{\AFP@OptionWarning{\CurrentOption}}% -\DeclareOptionX{number}{\AFP@OptionWarning{\CurrentOption}}% -\DeclareOptionX{sort&compress}{\AFP@OptionWarning{\CurrentOption}}% -\DeclareOptionX*{\PassOptionsToClass{\CurrentOption}{elsarticle}} -\ProcessOptionsX -\@namedef{ver@natbib.sty}{} -\@namedef{opt@natbib.sty}{round,authoryear} -\newlength\bibsep -\LoadClass[1p,authoryear,round]{elsarticle} -\RequirePackage{lastpage,fancyhdr} -\RequirePackage{caption} -\RequirePackage{booktabs} -\RequirePackage{graphicx} -\RequirePackage[hyperfootnotes=false,colorlinks,allcolors=blue]{hyperref} -\expandafter\let\csname ver@natbib.sty\endcsname=\@undefined -\let\bibsep=\@undefined -\RequirePackage[natbibapa]{apacite} -\renewenvironment{abstract}{\global\setbox\absbox=\vbox\bgroup - \hsize=\textwidth\def\baselinestretch{1}% - \noindent\unskip\ignorespaces} - {\egroup} -\def\tnoteref#1{\AFP@DisableMacro{tnoteref}} -\def\corref#1{\AFP@DisableMacro{corref}} -\def\fnref#1{\AFP@DisableMacro{fnref}} -\renewcommand*{\title}[2][]{\gdef\shorttitle{#1}\gdef\@title{#2}} -\edef\title{\@nx\@dblarg - \@xp\@nx\csname\string\title\endcsname} -\newif\ifAFP@corrauthor -\def\authors{} -\def\shortauthors{\authors} -\def\author{% - \@ifstar{\AFP@corrauthortrue\AFP@author}{\AFP@corrauthorfalse\AFP@author}} -\def\AFP@author{\@ifnextchar[{\@@author}{\@author}} -\def\@@author[#1]#2{% - \ifx\@empty\authors - \gdef\authors{#2}% - \else - \g@addto@macro\authors{\and#2}% - \fi - \g@addto@macro\elsauthors{% - \normalsize\upshape - \def\baselinestretch{1}% - \authorsep#2\unskip}% - \ifAFP@corrauthor - \g@addto@macro\elsauthors{\textsuperscript{$\ast$,}}\fi - \g@addto@macro\elsauthors{% - \textsuperscript{%#1% - \@for\@@affmark:=#1\do{% - \edef\affnum{\@ifundefined{X@\@@affmark}{1}{\elsRef{\@@affmark}}}% - \unskip\sep\affnum\let\sep=,}% - \ifx\@fnmark\@empty\else\unskip\sep\@fnmark\let\sep=,\fi - \ifx\@corref\@empty\else\unskip\sep\@corref\let\sep=,\fi - }% - \def\authorsep{\unskip,\space}% - \global\let\sep\@empty\global\let\@corref\@empty - \global\let\@fnmark\@empty}% - \@eadauthor={#2} -} -\def\@author#1{% - \ifx\@empty\authors - \gdef\authors{#1}% - \else - \g@addto@macro\authors{\and#1}% - \fi - \g@addto@macro\elsauthors{\normalsize% - \def\baselinestretch{1}% - \upshape\authorsep#1} - \ifAFP@corrauthor - \g@addto@macro\elsauthors{\textsuperscript{$\ast$}}\fi - \g@addto@macro\elsauthors{% - \def\authorsep{\unskip,\space}% - \global\let\@fnmark\@empty - \global\let\sep\@empty}% - \@eadauthor={#1} -} -\long\def\@address#1{\g@addto@macro\elsauthors{% - \def\baselinestretch{1}\def\addsep{\par\vskip4pt}% - \addsep\footnotesize\itshape#1% - \def\authorsep{\par\vskip16pt}}} -\def\paperUrl#1{\gdef\@paperUrl{#1}} -\paperUrl{} -\newwrite\@mainrpi -\def\RESP@write@paper@info{% - \bgroup - \if@filesw - \openout\@mainrpi\jobname.rpi% - \write\@mainrpi{\relax}% - \ifx\r@LastPage\@undefined - \edef\@tempa{\start@page}% - \else - \def\@tempb##1##2##3##4##5{##2}% - \edef\@tempa{\expandafter\@tempb\r@LastPage}% - \fi - \def\and{\string\and\space}% - \protected@write\@mainrpi{}% - {\string\articleentry{\authors}{\@title}{\start@page}{\@tempa}}% - \protected@write\@mainrpi{}% - {\@percentchar authors=\authors}% - \protected@write\@mainrpi{}% - {\@percentchar title=\@title}% - \protected@write\@mainrpi{}% - {\@percentchar year=\currentyear}% - \protected@write\@mainrpi{}% - {\@percentchar volume=\currentvolume}% - \protected@write\@mainrpi{}% - {\@percentchar issue=\currentissue}% - \protected@write\@mainrpi{}% - {\@percentchar paper=\currentpaper}% - \protected@write\@mainrpi{}% - {\@percentchar startpage=\start@page}% - \protected@write\@mainrpi{}% - {\@percentchar endpage=\@tempa}% - \protected@write\@mainrpi{}% - {\@percentchar doi=\@doinumber}% - \ifx\@paperUrl\@empty\else - \protected@write\@mainrpi{}% - {\@percentchar paperUrl=\@paperUrl}% - \fi - \closeout\@mainrpi - \fi -\egroup} -\def\maketitle{% - \null\bigskip\par - \iflongmktitle\getSpaceLeft - \global\setbox\els@boxa=\vsplit0 to \@tempdima - \box\els@boxa\par\resetTitleCounters - \printFirstPageNotes - \box0% - \else - \finalMaketitle\printFirstPageNotes - \fi - \RESP@write@paper@info - \author@andify\authors - \xdef\authors{\authors}% - \gdef\thefootnote{\arabic{footnote}}% - \thispagestyle{firstpagestyle}% -} -\def\volumenumber#1{\gdef\currentvolume{#1}} -\volumenumber{} -\def\issuenumber#1{\gdef\currentissue{#1}} -\issuenumber{} -\def\publicationyear#1{\gdef\currentyear{#1}} -\publicationyear{} -\newcommand\publicationmonth[2][]{\gdef\currentmonth{#2}% - \gdef\abbrevcurrentmonth{#1}% - \ifx\abbrevcurrentmonth\@empty\gdef\abbrevcurrentmonth{#2}\fi} -\publicationmonth{} -\def\papernumber#1{\gdef\currentpaper{#1}} -\papernumber{0000} -\def\doinumber#1{\gdef\@doinumber{#1}} -\doinumber{123.4567/archivesforensicpsychology.\currentyear.\currentvolume.\currentissue.\currentpaper} -\def\startpage#1{\pagenumbering{arabic}\setcounter{page}{#1}% - \gdef\start@page{#1}% - \ifnum\c@page<\z@ \pagenumbering{roman}\setcounter{page}{-#1}% - \gdef\start@page{\romannumeral#1}% - \fi} -\def\endpage#1{\def\@tempa{#1}% - \ifx\@tempa\@empty\def\end@page{\pageref{LastPage}}% - \else\def\end@page{#1}\fi} -\def\pagespan#1#2{\startpage{#1}\endpage{#2}} -\pagespan{1}{} -\def\articleentry#1#2#3#4{\@tempcnta=#4\relax - \advance\@tempcnta by 1\relax - \ifodd\the\@tempcnta\else\advance\@tempcnta by 1\relax\fi - \startpage{\the\@tempcnta}} -\def\prevpaper#1{\IfFileExists{#1.rpi}{% - \ClassInfo{afparticle}{% - Reading first page number from the file #1.rpi}% - \input{#1.rpi}% - }{\ClassWarning{afparticle}{Cannot find the file #1.rpi. - Did you run latex on the previous paper?}}} -\def\AFP@backmatter{} -\def\received#1{\g@addto@macro\AFP@backmatter{Received: #1\\}} -\def\revised#1{\g@addto@macro\AFP@backmatter{Revision Received: #1\\}} -\def\accepted#1{\g@addto@macro\AFP@backmatter{Accepted: #1\\}} -\def\printbackmatter{\ifx\AFP@backmatter\@empty\else\medskip - \begin{flushright}% - \AFP@backmatter - \end{flushright}% -\fi} -\AtBeginDocument{\@twosidetrue} -\setlength\footskip{40\p@} -\renewcommand{\headrulewidth}{0pt} -\renewcommand{\footrulewidth}{0pt} -\fancypagestyle{standardpagestyle}{% - \fancyhead{}% - \fancyfoot{}% - \fancyfoot[R]{\thepage}% - \fancyhead[CE]{\scshape\MakeLowercase{\shortauthors}}% - \fancyhead[CO]{\scshape\MakeLowercase{\shorttitle}}% -} -\pagestyle{standardpagestyle} -\fancypagestyle{firstpagestyle}{% - \fancyhead{}% - \fancyfoot{}% - \fancyfoot[R]{\thepage}% - \fancyhead[L]{\small Archives of Forensic Psychology\\ - \currentyear, Vol.~\currentvolume, No.~\currentissue, - \thepage--\end@page}% - \fancyhead[R]{\small\textcopyright~\currentyear\ Global Institute of - Forensic Psychology\\ISSN~2334-2749}% -} -\setlength\parindent{2em} -\setcounter{secnumdepth}{-1} -\renewcommand\section{\@startsection {section}{1}{\z@}% - {18\p@ \@plus 6\p@ \@minus 3\p@}% - {9\p@ \@plus 6\p@ \@minus 3\p@}% - {\centering\normalsize\bfseries\boldmath}} -\renewcommand\subsection{\@startsection {subsection}{2}{\z@}% - {18\p@ \@plus 6\p@ \@minus 3\p@}% - {9\p@ \@plus 6\p@ \@minus 3\p@}% - {\normalsize\bfseries\boldmath}} -\renewcommand\subsubsection{\@startsection{subsubsection}{3}{0\z@}% - {0\z@}% - {-6\p@}% - {\normalfont\hspace*{\parindent}\itshape\@addfinaldot}} -\def\@addfinaldot#1{#1.} -\DeclareCaptionLabelSeparator{periodNewline}{.\\} -\captionsetup[table]{position=top, format=plain, - labelsep=periodNewline, justification=centering, - singlelinecheck=off, font=normalsize, textfont=it} -\captionsetup[figure]{position=bottom, format=plain, - labelsep=period, justification=centering, - singlelinecheck=off, font=normalsize, labelfont=it} -\tolerance=1 -\emergencystretch=\maxdimen -\hyphenpenalty=10000 -\hbadness=10000 -\normalsize\normalfont -\endinput -%% -%% End of file `afparticle.cls'. diff --git a/Master/tlpkg/bin/tlpkg-ctan-check b/Master/tlpkg/bin/tlpkg-ctan-check index 4dce55a3468..8c921ee3d38 100755 --- a/Master/tlpkg/bin/tlpkg-ctan-check +++ b/Master/tlpkg/bin/tlpkg-ctan-check @@ -30,7 +30,7 @@ my @TLP_working = qw( adfathesis adforn adhocfilelist adigraph adjmulticol adfsymbols adjustbox adobemapping adrconv adtrees advdate advice - ae aeguill aesupp affilauthor afparticle afthesis + ae aeguill aesupp affilauthor afthesis aguplus aiaa aichej aiplans ajl akktex akletter akshar albatross alchemist alegreya alertmessage alfaslabone alg algobox algolrevived diff --git a/Master/tlpkg/libexec/ctan2tds b/Master/tlpkg/libexec/ctan2tds index 7235bac84a0..bfb022e023a 100755 --- a/Master/tlpkg/libexec/ctan2tds +++ b/Master/tlpkg/libexec/ctan2tds @@ -101,6 +101,7 @@ chomp (my $ctan_root = `tlpkginfo --ctan-root`); 'aeb_tilebg', "die 'skipping, per author (dps) request'", 'aecc', "die 'skipping, obsolete on CTAN'", 'aesupp', "&MAKEflatten", + 'afparticle', "die 'skipping, obsolete on CTAN'", 'akktex', "&MAKEflatten", 'alatex', "die 'skipping, 1995 LaTeX generalization'", 'alfaslabone', "&MAKEflatten", diff --git a/Master/tlpkg/tlpsrc/afparticle.tlpsrc b/Master/tlpkg/tlpsrc/afparticle.tlpsrc deleted file mode 100644 index e69de29bb2d..00000000000 --- a/Master/tlpkg/tlpsrc/afparticle.tlpsrc +++ /dev/null diff --git a/Master/tlpkg/tlpsrc/collection-publishers.tlpsrc b/Master/tlpkg/tlpsrc/collection-publishers.tlpsrc index 745ba19d81c..7153d5a80a1 100644 --- a/Master/tlpkg/tlpsrc/collection-publishers.tlpsrc +++ b/Master/tlpkg/tlpsrc/collection-publishers.tlpsrc @@ -11,7 +11,6 @@ depend acmart depend acmconf depend active-conf depend adfathesis -depend afparticle depend afthesis depend aguplus depend aiaa |