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authorKarl Berry <karl@freefriends.org>2023-05-29 19:07:17 +0000
committerKarl Berry <karl@freefriends.org>2023-05-29 19:07:17 +0000
commit9ad7e7e1cc14870756d45dee777addbec4931a04 (patch)
treed6195a97da3982dbcf4d534b08751883e5317265 /Master/texmf-dist/source
parentd2395991eed08a2bb35fa17dba023f40323177a4 (diff)
texshade (29may23)
git-svn-id: svn://tug.org/texlive/trunk@67243 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Master/texmf-dist/source')
-rw-r--r--Master/texmf-dist/source/latex/texshade/texshade.dtx25
-rw-r--r--Master/texmf-dist/source/latex/texshade/texshade.ins6
2 files changed, 20 insertions, 11 deletions
diff --git a/Master/texmf-dist/source/latex/texshade/texshade.dtx b/Master/texmf-dist/source/latex/texshade/texshade.dtx
index 2f14d416530..44fad1c38f8 100644
--- a/Master/texmf-dist/source/latex/texshade/texshade.dtx
+++ b/Master/texmf-dist/source/latex/texshade/texshade.dtx
@@ -10,8 +10,7 @@
% `README.txt' for further information!
%
%
-% Copyright (C) 1999-2021 Eric Beitz
-% See the file texshade.txt
+% Copyright (C) 1999-2023 Eric Beitz
%
% \fi
%
@@ -419,6 +418,10 @@
% structure meme paper was added;
% `par' line endings now treated correctly.}
%
+% \changes{1.26b}{2023-05-28}{%
+% Corrections: shading, tinting, emphasizing, lower casing
+% of motifs now works with set domains.}
+%
%
%
% \CharacterTable
@@ -458,7 +461,7 @@
% for further information, updates and on-line documentation
% see my homepage at
% \texttt{www.pharmazie.uni-kiel.de/chem/Prof\_Beitz/biotex.html} }}
-% \date{\small v1.26a; 2022/08/29\\[2pt]}
+% \date{\small v1.26b; 2023/05/28\\[2pt]}
% \maketitle
% \begin{abstract}
% Setting alignments of nucleotides and peptides for publication
@@ -542,12 +545,12 @@
%
% \subsection{Version History}
%
-% \textbf{v1.26(a) 2021/04/01 (2022/08/29)}
+% \textbf{v1.26(a, b) 2021/04/01 (2022/08/29, 2023/05/28)}
% \medskip
%
% \emph{Corrections}: Frames at line ends remain open to indicate
% continuity of the marked region, and |\par| line endings are now treated
-% correctly.
+% correctly; motifs are now properly located in set domains for shading etc.
%
% \emph{Introductions:}
% Chimera command file export option for 'structure memes'
@@ -6611,8 +6614,8 @@
% \begin{macrocode}
%<*texshade>
\NeedsTeXFormat{LaTeX2e}
-\ProvidesPackage{texshade}[2022/08/29 LaTeX TeXshade (v1.26a)]
-\message{Package `texshade', Version 1.26a of 2022/08/29.}
+\ProvidesPackage{texshade}[2023/05/28 LaTeX TeXshade (v1.26b)]
+\message{Package `texshade', Version 1.26b of 2023/05/28.}
\PassOptionsToPackage{dvips}{color}
\PassOptionsToPackage{dvips}{graphicx}
@@ -10073,7 +10076,11 @@
\advance\temp@@count by 1
\xdef\first@@{\csname motif\the\temp@@count\endcsname}
\expandafter\get@motif@specs\first@@
- \xdef\first@@{\csname sequence\seq@\endcsname &@}
+ \if\dom@in\y@
+ \xdef\first@@{\csname seq@dom\seq@\endcsname &@}
+ \else
+ \xdef\first@@{\csname sequence\seq@\endcsname &@}
+ \fi
\temp@count=\csname res@count\seq@\endcsname
\expandafter\ifnum\csname seq@start\seq@\endcsname<0 \ifx\allow@zero\n@ \advance\temp@count by 1 \fi\fi
\xdef\f@text@{\@ll}
@@ -21371,6 +21378,7 @@
\expandafter\xdef\csname T@cof\the\loopcount\endcsname{\temp@ &@}
\expandafter\xdef\csname T@coffee\the\loopcount\endcsname{}
\fi
+ \expandafter\xdef\csname seq@dom\the\loopcount\endcsname{\csname sequence\the\loopcount\endcsname}
\expandafter\xdef\csname seq\the\loopcount\endcsname{\csname sequence\the\loopcount\endcsname &@}
\expandafter\xdef\csname sequence\the\loopcount\endcsname{}
\expandafter\xdef\csname dom@num\the\loopcount\endcsname{}
@@ -21486,6 +21494,7 @@
\expandafter\xdef\csname T@cof\the\loopcount\endcsname{\temp@ &@}
\expandafter\xdef\csname T@coffee\the\loopcount\endcsname{}
\fi
+ \expandafter\xdef\csname seq@dom\the\loopcount\endcsname{\csname sequence\the\loopcount\endcsname}
\expandafter\xdef\csname seq\the\loopcount\endcsname{\csname sequence\the\loopcount\endcsname &@}
\expandafter\xdef\csname sequence\the\loopcount\endcsname{}
\expandafter\xdef\csname dom@num\the\loopcount\endcsname{}
diff --git a/Master/texmf-dist/source/latex/texshade/texshade.ins b/Master/texmf-dist/source/latex/texshade/texshade.ins
index 75dce91652b..47130a06994 100644
--- a/Master/texmf-dist/source/latex/texshade/texshade.ins
+++ b/Master/texmf-dist/source/latex/texshade/texshade.ins
@@ -1,7 +1,7 @@
%%
%% docstrip install file for texshade.sty
%%
-%% Copyright 1999-2021 Eric Beitz
+%% Copyright 1999-2023 Eric Beitz
%%
\def\batchfile{texshade.ins}
@@ -14,8 +14,8 @@
LaTeX package for typesetting nucleotide and peptide alignments
-Copyright (C) 1999-2021 Eric Beitz
-See the file texshade.txt
+Copyright (C) 1999-2023 Eric Beitz
+See the file README
\endpreamble