chemmacros (6jul14)

git-svn-id: svn://tug.org/texlive/trunk@34532 c570f23f-e606-0410-a88d-b1316a301751

9 files changed, 65 insertions, 19 deletions

diff --git a/Master/texmf-dist/doc/latex/chemmacros/README b/Master/texmf-dist/doc/latex/chemmacros/README
index 11ca389c3b7..ccfff0f53f5 100644
--- a/Master/texmf-dist/doc/latex/chemmacros/README
+++ b/Master/texmf-dist/doc/latex/chemmacros/README
@@ -1,8 +1,8 @@
 --------------------------------------------------------------------------
-the CHEMMACROS bundle 2014/04/08
- - chemmacros package v4.5   -> macros and commands for chemists
- - chemformula package v4.5  -> typeset chemical compounds and reactions
- - ghsystem package v4.5     -> typeset H & P statements and pictograms
+the CHEMMACROS bundle 2014/05/30
+ - chemmacros package v4.5a  -> macros and commands for chemists
+ - chemformula package v4.6  -> typeset chemical compounds and reactions
+ - ghsystem package v4.5b    -> typeset H & P statements and pictograms
                                 from the globally harmonised system (GHS)
  - chemgreek package v0.4    -> handle mapping of upright greek letters to
                                 the \chemalpha ... commands
diff --git a/Master/texmf-dist/doc/latex/chemmacros/chemformula_en.pdf b/Master/texmf-dist/doc/latex/chemmacros/chemformula_en.pdf
index c1e6ba8075d..f286057ff45 100644
--- a/Master/texmf-dist/doc/latex/chemmacros/chemformula_en.pdf
+++ b/Master/texmf-dist/doc/latex/chemmacros/chemformula_en.pdf
diff --git a/Master/texmf-dist/doc/latex/chemmacros/chemformula_en.tex b/Master/texmf-dist/doc/latex/chemmacros/chemformula_en.tex
index 00ebc3d13d8..a00165db17a 100644
--- a/Master/texmf-dist/doc/latex/chemmacros/chemformula_en.tex
+++ b/Master/texmf-dist/doc/latex/chemmacros/chemformula_en.tex
@@ -613,6 +613,21 @@ gives the excited state.
   \ch{NO^*}
 \end{example}
 
+Actually\changedversion{4.5a} a dot \code{.} is not always treated as
+indicator for a radical: if the dot in the superscript is followed by a number
+it is interpreted as a decimal sign.  It is typeset according to the option
+\option{decimal-marker}.  This may be a good place to mention that a comma
+\code{,} in a superscript is also typeset according to
+\option{decimal-marker}.
+
+\begin{example}[side-by-side]
+  \ch{^{22,98}_{11}Na}
+  \ch{^{22.98}_{11}Na}\par
+  \setchemformula{decimal-marker={,}}
+  \ch{^{22,98}_{11}Na}
+  \ch{^{22.98}_{11}Na}
+\end{example}
+
 Ions and ion composites with more than one charge can be typeset quite as
 easy:
 \begin{example}[side-by-side]
@@ -629,6 +644,25 @@ superscript alignment.  The \chemmacros\ option \code{circled} is obeyed by
   \ch{H+ + OH- <=> H2O}
 \end{example}
 
+\chemformula{} knows the options \option{circled} and \option{circletype} also
+on its own:
+
+There are coupled with \chemmacros{} options, \ie, setting \chemmacros'
+options will also set \chemformula's equivalents.  The other way around the
+options act independently: setting \chemformula's options will \emph{not} set
+\chemmacros' options.
+\begin{options}
+  \keychoice{circled}{formal,\default{all},none}\Default{formal}
+    \chemformula\ uses two different kinds of charges which indicate the usage
+    of real ($+/-$) and formal (\fplus/\fminus) charges.  The choice
+    \code{formal} distinguishes between them, choice \code{none} displays them
+    all without circle, choice \code{all} circles all.
+  % circletype
+  \keychoice{circletype}{\default{chem},math}\Default{chem}
+    This option switches between two kinds of circled charge symbols:
+    \cs{fplus} \fplus\ and \verbcode+$\oplus$+ $\oplus$.
+\end{options}
+
 \paragraph{Behaviour}
 The supercripts behave differently depending on their position in a compound,
 if there are super- and subscripts following each other directly.
@@ -773,6 +807,14 @@ These options allow you to customize the ouptut of the compounds:
     Extra vertical shift of the superscripts.
   \keychoice{charge-style}{text,math}\Default{text}
     Style that is used to typeset the superscripts.
+  \keychoice{circled}{formal,\default{all},none}\Default{formal}
+    \sinceversion{4.6}Like \chemmacros' package option but local to
+    \chemformula's \cs{ch}.  That is: since \chemmacros' macros use
+    \chemformula's mechanism this is effectively an alias.
+  \keychoice{circletype}{\default{chem},math}\Default{chem}
+    \sinceversion{4.6}Like \chemmacros' package option but local to
+    \chemformula's \cs{ch}.  That is: since \chemmacros' macros use
+    \chemformula's mechanism this is effectively an alias.
   \keyval{adduct-space}{dim}\Default{.1333em}
     Space to the left and the right of the adduct point.
   \keyval{bond-length}{dim}\Default{.5833em}
@@ -1477,7 +1519,7 @@ a \code{*} produce a little filled circle. In the Kröger-Vink notation a prime
 denotes a negative relative charge, the circle a positive relative charge, and
 the cross denotes a neutral relative charge.
 
-\begin{example}[side-by-side]
+\begin{example}[side-by-side,add-sourcecode-options={literate=}]
   \setchemformula{kroeger-vink=true}
   \ch{Al_{Al}^'}
   \ch{Al_{Al}'}\par
@@ -1486,8 +1528,8 @@ the cross denotes a neutral relative charge.
   \ch{V_{Cl}^*}\par
   \ch{Ca_i^{..}}\par
   \ch{e^'}\par
-  \ch{Cl_i^{''}}
-  \ch{Cl_i''}\par
+  \ch{Cl_i^'}
+  \ch{Cl_i'}\par
   \ch{O_i^{''}}
   \ch{O_i''}
 \end{example}
diff --git a/Master/texmf-dist/doc/latex/chemmacros/chemgreek_en.pdf b/Master/texmf-dist/doc/latex/chemmacros/chemgreek_en.pdf
index 2bc8bcd89d8..d426bc38a8e 100644
--- a/Master/texmf-dist/doc/latex/chemmacros/chemgreek_en.pdf
+++ b/Master/texmf-dist/doc/latex/chemmacros/chemgreek_en.pdf
diff --git a/Master/texmf-dist/doc/latex/chemmacros/chemgreek_en.tex b/Master/texmf-dist/doc/latex/chemmacros/chemgreek_en.tex
index c26422e4167..6df2ffb9498 100644
--- a/Master/texmf-dist/doc/latex/chemmacros/chemgreek_en.tex
+++ b/Master/texmf-dist/doc/latex/chemmacros/chemgreek_en.tex
@@ -1,7 +1,7 @@
 % arara: pdflatex: { shell: on }
-% !arara: biber
+% arara: biber
+% arara: pdflatex
 % arara: pdflatex
-% !arara: pdflatex
 % --------------------------------------------------------------------------
 % the CHEMMACROS bundle
 %   chemgreek_en.tex
diff --git a/Master/texmf-dist/doc/latex/chemmacros/chemmacros_en.pdf b/Master/texmf-dist/doc/latex/chemmacros/chemmacros_en.pdf
index cb13c1ad0ea..e0c00723c65 100644
--- a/Master/texmf-dist/doc/latex/chemmacros/chemmacros_en.pdf
+++ b/Master/texmf-dist/doc/latex/chemmacros/chemmacros_en.pdf
diff --git a/Master/texmf-dist/doc/latex/chemmacros/chemmacros_en.tex b/Master/texmf-dist/doc/latex/chemmacros/chemmacros_en.tex
index bc5bcc0d24e..0c49bb435cd 100644
--- a/Master/texmf-dist/doc/latex/chemmacros/chemmacros_en.tex
+++ b/Master/texmf-dist/doc/latex/chemmacros/chemmacros_en.tex
@@ -216,6 +216,8 @@
   author    = {R. Panico and W. H. Powell and J-C. Richer},
   title     = {``Nomenclature of Organic Chemistry, Sections A, B, C, D, E, F,
     and H'', \acs{iupac} Blue Book},
+  sorttitle = {Nomenclature of Organic Chemistry} ,
+  indexsorttitle = {Nomenclature of Organic Chemistry} ,
   edition   = {\mkbibacro{draft}},
   date      = {2004-10-07},
   url       =
@@ -224,6 +226,7 @@
 }
 @misc{eu:ghsystem_regulation,
   author   = {{The European Parliament and The Council of the European Union}},
+  sortname = {European Parliament and The Council of the European Union} ,
   title    = {Regulation (EC) No 1272/2008 of the European Parliament and of
     the Council} ,
   subtitle = {on classification, labelling and packaging of substances and
@@ -446,7 +449,7 @@ you load them explicitly any given option will silently fail.  Options can
 then only be set using the setup command.
 \begin{options}
   % circled
-  \keychoice{circled}{\default{formal},all,none}\Module{option}\Default{formal}
+  \keychoice{circled}{formal,\default{all},none}\Module{option}\Default{formal}
     \chemmacros\ uses two different kinds of charges which indicate the usage
     of real ($+/-$) and formal (\fplus/\fminus) charges.  The option
     \code{formal} distinguishes between them, option \code{none} displays them
diff --git a/Master/texmf-dist/doc/latex/chemmacros/ghsystem_en.pdf b/Master/texmf-dist/doc/latex/chemmacros/ghsystem_en.pdf
index f52b8a18b42..695c1e0242d 100644
--- a/Master/texmf-dist/doc/latex/chemmacros/ghsystem_en.pdf
+++ b/Master/texmf-dist/doc/latex/chemmacros/ghsystem_en.pdf
diff --git a/Master/texmf-dist/doc/latex/chemmacros/ghsystem_en.tex b/Master/texmf-dist/doc/latex/chemmacros/ghsystem_en.tex
index aa0d6b971e4..b345dd08df1 100644
--- a/Master/texmf-dist/doc/latex/chemmacros/ghsystem_en.tex
+++ b/Master/texmf-dist/doc/latex/chemmacros/ghsystem_en.tex
@@ -1,6 +1,6 @@
 % arara: pdflatex
-% !arara: biber
-% !arara: pdflatex
+% arara: biber
+% arara: pdflatex
 % arara: pdflatex
 % --------------------------------------------------------------------------
 % the CHEMMACROS bundle
@@ -517,16 +517,17 @@ pictograms.  You are free to choose the picture type yourself with the option
 \end{options}
 
 \section{Available Languages}\label{sec:ghsystem_language}
-Right now the H and P statements are only available in English, German or
-Italian.  The package adapts \chemmacros' option \option{language} or if the
-option hasn't been used recognizes the language settings made with \pkg{babel}
-or \pkg{polyglossia}.  To be more precise: the language selected at begin
-document is recognized.  Later changes won't affect \ghsystem.  If you want to
-use different languages you have to use \ghsystem's language option then.
+Right now the H and P statements are only available in English, German,
+Italian and Spanish.  The package adapts \chemmacros' option \option{language}
+or if the option hasn't been used recognizes the language settings made with
+\pkg{babel} or \pkg{polyglossia}.  To be more precise: the language selected
+at begin document is recognized.  Later changes won't affect \ghsystem.  If
+you want to use different languages you have to use \ghsystem's language
+option then.
 
 You can also choose the language explicitly.
 \begin{options}
-  \keychoice{language}{english,german,italian}\Default{english}
+  \keychoice{language}{english,german,italian,spanish}\Default{english}
     Selects and loads language file.  Falls back to \code{english} if the
     chosen file doesn't exist.
 \end{options}