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authorKarl Berry <karl@freefriends.org>2013-04-24 23:03:45 +0000
committerKarl Berry <karl@freefriends.org>2013-04-24 23:03:45 +0000
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treeb2157d19fc28f53f0447f2a3c857ffd37155dd97 /Master/texmf-dist/doc/latex/tikz-bayesnet
parent8dd5331b1c2612522ed62e8557f498650c1114e7 (diff)
tikz-bayesnet (24apr13)
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-rw-r--r--Master/texmf-dist/doc/latex/tikz-bayesnet/README.rst120
-rw-r--r--Master/texmf-dist/doc/latex/tikz-bayesnet/example.tex158
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diff --git a/Master/texmf-dist/doc/latex/tikz-bayesnet/LICENSE_LPPL b/Master/texmf-dist/doc/latex/tikz-bayesnet/LICENSE_LPPL
new file mode 100644
index 00000000000..22443139013
--- /dev/null
+++ b/Master/texmf-dist/doc/latex/tikz-bayesnet/LICENSE_LPPL
@@ -0,0 +1,416 @@
+The LaTeX Project Public License
+=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
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diff --git a/Master/texmf-dist/doc/latex/tikz-bayesnet/README.rst b/Master/texmf-dist/doc/latex/tikz-bayesnet/README.rst
new file mode 100644
index 00000000000..e65c6f7734f
--- /dev/null
+++ b/Master/texmf-dist/doc/latex/tikz-bayesnet/README.rst
@@ -0,0 +1,120 @@
+BayesNet
+========
+
+TikZ library for drawing Bayesian networks, graphical models and (directed) factor
+graphs in LaTeX.
+
+Contents
+--------
+
+Provides the following node styles:
+
+* :code:`latent`
+
+* :code:`obs`
+
+* :code:`det`
+
+* :code:`const`
+
+* :code:`factor`
+
+* :code:`plate`
+
+* :code:`gate`
+
+Provides the following commands (note that any of the arguments can be
+empty):
+
+* :code:`\factor [options] {name} {caption} {inputs} {outputs}`
+
+* :code:`\plate [options] {name} {fitlist} {caption}`
+
+* :code:`\gate [options] {name} {fitlist} {inputs}`
+
+* :code:`\vgate {name} {fitlist-left} {caption-left} {fitlist-right}
+ {caption-right} {inputs}`
+
+* :code:`\hgate {name} {fitlist-top} {caption-top} {fitlist-bottom}
+ {caption-bottom} {inputs}`
+
+* :code:`\edge [options] {inputs} {outputs}`
+
+* :code:`\factoredge [options] {inputs} {factors} {outputs}`
+
+Usage
+-----
+
+Install the package by copying tikzlibrarybayesnet.code.tex to your
+LaTeX system or copy the file into projects that are using it. To use
+the library in your LaTeX file
+
+.. code-block:: python
+
+ \usepackage{tikz}
+ \usetikzlibrary{bayesnet}
+
+Compile the LaTeX example:
+
+.. code-block:: none
+
+ pdflatex example.tex
+
+and see the resulting PDF file example.pdf.
+
+Example
+-------
+
+.. figure:: http://i.imgur.com/CzNyk.png
+ :align: center
+ :alt: Bayesian network.
+
+ PCA model as a Bayesian network and a directed factor graph.
+
+.. figure:: http://i.imgur.com/CBZqL.png
+ :align: center
+ :alt: Citation influence model
+
+ Directed factor graph of the citation influence model.
+
+
+Related projects
+----------------
+
+This library is derived from a technical report "Directed Factor Graph
+Notation for Generative Models" and the accompanying TikZ macros by
+Laura Dietz 2010 (http://people.cs.umass.edu/~dietz/).
+
+GraphViz (http://www.graphviz.org/) is a more general open source
+graph visualization software. It uses DOT file format to describe the
+structure of the graph. The DOT file can be converted to LaTeX using
+:code:`dot2tex` (http://www.fauskes.net/code/dot2tex/).
+
+UAI (http://graphmod.ics.uci.edu/uai08/FileFormat) is a simple text
+file format to describe Markov networks. The UAI file format can be
+converted to DOT file format using :code:`uai2dot`
+(https://github.com/drewfrank/uai2dot).
+
+License
+-------
+
+| Copyright (C) 2010-2011 Laura Dietz
+| Copyright (C) 2012 Jaakko Luttinen jaakko.luttinen@aalto.fi
+
+This work may be distributed and/or modified under the conditions of
+the LaTeX Project Public License, either version 1.3 of this license
+or (at your option) any later version. The license is in the file
+LICENSE_LPPL and the latest version of this license is in
+http://www.latex-project.org/lppl.txt and version 1.3 or later is part
+of all distributions of LaTeX version 2005/12/01 or later.
+
+This work is free software: you can redistribute it and/or modify it
+under the terms of the GNU General Public License as published by the
+Free Software Foundation, either version 3 of the License, or (at your
+option) any later version. This work is distributed in the hope that
+it will be useful, but WITHOUT ANY WARRANTY; without even the implied
+warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See
+the GNU General Public License for more details. See the license in
+the file LICENSE_GPL or visit <http://www.gnu.org/licenses/>.
+
+
diff --git a/Master/texmf-dist/doc/latex/tikz-bayesnet/example.tex b/Master/texmf-dist/doc/latex/tikz-bayesnet/example.tex
new file mode 100644
index 00000000000..19381bd8a1c
--- /dev/null
+++ b/Master/texmf-dist/doc/latex/tikz-bayesnet/example.tex
@@ -0,0 +1,158 @@
+% example.tex
+%
+% Copyright (C) 2010,2011 Laura Dietz
+% Copyright (C) 2012 Jaakko Luttinen
+%
+% This file may be distributed and/or modified
+%
+% 1. under the LaTeX Project Public License and/or
+% 2. under the GNU General Public License.
+%
+% See the files LICENSE_LPPL and LICENSE_GPL for more details.
+
+\documentclass[a4paper]{article}
+
+\usepackage{tikz}
+\usetikzlibrary{bayesnet}
+%\pgfrealjobname{example} % name of this file
+
+\title{Graphical Models in Tikz}
+\author{Laura Dietz, Jaakko Luttinen}
+
+\begin{document}
+
+\maketitle
+
+TikZ examples for graphical models (Bayesian networks) and directed
+factor graphs \cite{Dietz:2010}.
+
+% A table of node types
+\begin{table}[ht]
+ \caption{Node types}
+ \begin{center}
+ \begin{tabular}{llc}
+ Type & Syntax & Output
+ \\
+ \hline
+ Latent variable &
+ \texttt{\textbackslash node[latent]} &
+ \tikz{ %
+ \node[latent] {$x$}; %
+ }
+ \\
+ Observed variable &
+ \texttt{\textbackslash node[obs]} &
+ \tikz{ %
+ \node[obs] {$y$}; %
+ }
+ \\
+ Deterministic &
+ \texttt{\textbackslash node[det]} &
+ \tikz{ %
+ \node[det] {dot} ; %
+ }
+ \\
+ Constant &
+ \texttt{\textbackslash node[const]} &
+ \tikz{ %
+ \node[const] {$a$}; %
+ }
+ \\
+ Factor &
+ \texttt{\textbackslash node[factor]} &
+ \tikz{ %
+ \node[factor] [label=$\mathcal{N}$] {}; %
+ }
+ \\
+ Factor with nodes &
+ &
+ \tikz{ %
+ \node[obs] (y) {$y$} ; %
+ \node[latent, left=of y, yshift=0.5cm] (mu) {$\mu$} ; %
+ \node[latent, left=of y, yshift=-0.5cm] (tau) {$\tau$} ; %
+ \factor[left=of y] {y-factor} {$\mathcal{N}$} {} {};
+ \factoredge {mu,tau} {y-factor} {y} ; %
+ }
+ \\
+ Plate &
+ \texttt{\textbackslash plate} &
+ \tikz{ %
+ \node[latent] (x) {$x_m$}; %
+ \plate {} {(x)} {$m \in \mathcal{M}$}; %
+ }
+ \\
+ Gate &
+ &
+ \tikz{
+ % Nodes
+ \node[obs] (k) {$k$}; %
+ \node[latent, above=2 of k] (l) {$\lambda$}; %
+ \factor[above=0.8 of k] {k-f} {Multi} {} {}; %
+ \node[latent, right=of k-f] (paa) {$\phi$}; %
+ %\node[latent, right=of k-f] (p) {$\phi$}; %
+ % Connections
+ \factoredge {paa} {k-f} {k} ; %
+ % Gate
+ \gate {} {(k-f)(k-f-caption)} {l} ; %
+ }
+ \end{tabular}
+ \end{center}
+\end{table}
+
+
+% Simple Bayesian network
+\begin{figure}[ht]
+ \begin{center}
+ \begin{tabular}{cc}
+ \input{model_pca} &
+ \input{model_pca2}
+ \end{tabular}
+ \end{center}
+ \caption{PCA model as a Bayesian network and a directed factor
+ graph.}
+\end{figure}
+
+% Latent Dirichlet allocation
+\begin{figure}[ht]
+ \begin{center}
+ \input{model_lda}
+ \end{center}
+ \caption{Latent Dirichlet allocation as directed factor graph.}
+\end{figure}
+
+% Citation influence model
+\begin{figure}[ht]
+ \begin{center}
+ \input{model_citation_influence}
+ \end{center}
+ \caption{Citation influence model with own topics \cite{Dietz:2007}
+ as directed factor graph.}
+\end{figure}
+
+\clearpage
+
+\begin{thebibliography}{9}
+
+\bibitem{Dietz:2010}
+ Laura Dietz,
+ \emph{Directed Factor Graph Notation for Generative Models}.
+ Technical Report. 2010
+
+% Laura Dietz, Steffen Bickel, Tobias Scheffer.
+% Unsupervised Prediction of Citation Influences.
+% In: Proceedings of International Conference on Machine Learning. 2007
+\bibitem{Dietz:2007}
+ Laura Dietz, Steffen Bickel, Tobias Scheffer,
+ \emph{Unsupervised Prediction of Citation Influences}.
+ In: Proceedings of International Conference on Machine
+ Learning. 2007
+
+
+\end{thebibliography}
+
+\end{document}
+
+%%% Local Variables:
+%%% mode: tex-pdf
+%%% TeX-master: t
+%%% End:
diff --git a/Master/texmf-dist/doc/latex/tikz-bayesnet/model_citation_influence.tex b/Master/texmf-dist/doc/latex/tikz-bayesnet/model_citation_influence.tex
new file mode 100644
index 00000000000..5df66a5a190
--- /dev/null
+++ b/Master/texmf-dist/doc/latex/tikz-bayesnet/model_citation_influence.tex
@@ -0,0 +1,135 @@
+% model_citation_influence.tex
+%
+% Copyright (C) 2010,2011 Laura Dietz
+% Copyright (C) 2012 Jaakko Luttinen
+%
+% This file may be distributed and/or modified
+%
+% 1. under the LaTeX Project Public License and/or
+% 2. under the GNU General Public License.
+%
+% See the files LICENSE_LPPL and LICENSE_GPL for more details.
+
+% Citation influence model
+% Cite this model as
+% Laura Dietz, Steffen Bickel, Tobias Scheffer.
+% Unsupervised Prediction of Citation Influences.
+% In: Proceedings of International Conference on Machine Learning. 2007
+
+%\beginpgfgraphicnamed{model-citation-influence}
+\begin{tikzpicture}
+
+ % Layout the variables
+ \matrix[row sep=0.5cm, column sep=1.2cm] (LDA)
+ { %
+ & %
+ & %
+ \node[latent] (gamma) {$\gamma$} ; & %
+ \node[latent] (lambda) {$\lambda$} ; & %
+ \node[latent] (psi) {$\psi$} ; %
+ \\
+ \\
+ \node[latent] (theta) {$\theta$} ; & %
+ & %
+ \node[latent] (C) {$C$} ; & %
+ \node[latent] (S) {$S$} ; & %
+ \\
+ & %
+ & %
+ \factor {T-f1} {Multi} {} {}; & %
+ & %
+ \factor {T-f2} {below:Multi} {} {}; & %
+ \\
+ \node[latent] (T') {$T'$} ; & %
+ & %
+ \node[latent] (T) {$T$} ; & %
+ \\
+ \factor {W'-f} {Multi} {} {}; & %
+ \node[latent] (phi) {$\phi$} ; & %
+ \factor {W-f} {Multi} {} {}; %
+ \\
+ \node[obs] (W') {$W'$} ; & %
+ & %
+ \node[obs] (W) {$W$} ;
+ \\
+ };
+
+ % Remaining factors
+ \factor[above=of T'] {T'-f} {left:Multi} {} {}; %
+ \factor[above=of theta] {theta-f} {left:Dir} {} {}; %
+ \factor[above=of C] {C-f} {left:Multi} {} {}; %
+ \factor[above=of S] {S-f} {left:Bern} {} {}; %
+ \factor[above=of gamma] {gamma-f} {left:Dir} {} {}; %
+ \factor[above=of lambda] {lambda-f} {left:Beta} {} {}; %
+ \factor[above=of psi] {psi-f} {left:Dir} {} {}; %
+ \factor[above=of phi] {phi-f} {left:Dir} {} {}; %
+
+ % Hyperparameters
+ \node[const, above=of theta] (atheta) {$\alpha_\theta$}; %
+ \node[const, above=of phi] (aphi) {$\alpha_\phi$}; %
+ \node[const, above=of gamma] (agamma) {$\alpha_\gamma$}; %
+ \node[const, above=of lambda, xshift=-0.5cm] (alambda1)
+ {$\alpha_{\lambda_\theta}$}; %
+ \node[const, above=of lambda, xshift=0.5cm] (alambda2)
+ {$\alpha_{\lambda_\psi}$}; %
+ \node[const, above=of psi] (apsi) {$\alpha_\psi$}; %
+
+ % Factor connections
+ \factoredge {phi} {W'-f} {W'} ; %
+ \factoredge {phi} {W-f} {W} ; %
+ \factoredge {theta} {T'-f} {T'} ; %
+ \factoredge {theta} {T-f1} {T} ; %
+ \factoredge {psi} {T-f2} {T} ; %
+ \factoredge {atheta} {theta-f} {theta} ; %
+ \factoredge {gamma} {C-f} {C} ; %
+ \factoredge {lambda} {S-f} {S} ; %
+ \factoredge {agamma} {gamma-f} {gamma} ; %
+ \factoredge {alambda1,alambda2} {lambda-f} {lambda} ; %
+ \factoredge {apsi} {psi-f} {psi} ; %
+ \factoredge {aphi} {phi-f} {phi} ; %
+
+ % Gates
+ \gate {W'-gate} {(W'-f)(W'-f-caption)} {T'} ; %
+ \gate {W-gate} {(W-f)(W-f-caption)} {T} ; %
+ \gate {T-gate} {(T-f1)(T-f1-caption)} {C} ;
+ \vgate {T-vgate} %
+ {(T-gate)} {$S=0$} %
+ {(T-f2)(T-f2-caption)} {$S=1$} %
+ {S} ; %
+
+ % Plates
+ \plate {LDA1} { %
+ (T')(T'-f)(T'-f-caption) %
+ (W')(W'-gate) %
+ } {$\forall w' \in c$} ; %
+
+ \plate {LDA2} { %
+ (LDA1) %
+ (theta)(theta-f)(theta-f-caption) %
+ } {$\forall c \in \mathcal{C}$} ; %
+
+ \plate {} { %
+ (phi)(phi-f)(phi-f-caption) %
+ } {$\forall t \in \mathcal{T}$} ; %
+
+ \plate {P1} { %
+ (W)(W-gate) %
+ (T)(T-vgate) %
+ (C)(C-f)(C-f-caption) %
+ (S)(S-f)(S-f-caption) %
+ } {$\forall w \in d$} ;
+
+ \plate {} { %
+ (P1) %
+ (gamma)(gamma-f)(gamma-f-caption) %
+ (lambda)(lambda-f)(lambda-f-caption) %
+ (psi)(psi-f)(psi-f-caption) %
+ } {$\forall d \in \mathcal{D}$} ; %
+
+\end{tikzpicture}
+%\endpgfgraphicnamed
+
+%%% Local Variables:
+%%% mode: tex-pdf
+%%% TeX-master: "example"
+%%% End:
diff --git a/Master/texmf-dist/doc/latex/tikz-bayesnet/model_lda.tex b/Master/texmf-dist/doc/latex/tikz-bayesnet/model_lda.tex
new file mode 100644
index 00000000000..92e9acc4a2f
--- /dev/null
+++ b/Master/texmf-dist/doc/latex/tikz-bayesnet/model_lda.tex
@@ -0,0 +1,62 @@
+% model_lda.tex
+%
+% Copyright (C) 2010,2011 Laura Dietz
+% Copyright (C) 2012 Jaakko Luttinen
+%
+% This file may be distributed and/or modified
+%
+% 1. under the LaTeX Project Public License and/or
+% 2. under the GNU General Public License.
+%
+% See the files LICENSE_LPPL and LICENSE_GPL for more details.
+
+% Latent Diriclet allocation model
+
+%\beginpgfgraphicnamed{model-lda}
+\begin{tikzpicture}[x=1.7cm,y=1.8cm]
+
+ % Nodes
+
+ \node[obs] (X) {$X$} ; %
+ \node[latent, above=of X] (T) {$T$} ; %
+ \node[latent, above=of T] (theta) {$\theta$}; %
+ \node[const, above=of theta] (atheta) {$\alpha_\theta$};
+
+
+ % Factors
+ \factor[above=of X] {X-f} {Multi} {} {} ; %
+ \factor[above=of T] {T-f} {left:Multi} {} {} ; %
+ \factor[above=of theta] {theta-f} {left:Dir} {} {} ; %
+
+ % More nodes
+ \node[latent, right=of X-f] (phi) {$\phi$}; %
+ \node[const, above=of phi] (aphi) {$\alpha_\phi$}; %
+
+ \factor[above=of phi] {phi-f} {right:Dir} {} {} ; %
+
+ \factoredge {theta} {T-f} {T} ; %
+ \factoredge {atheta} {theta-f} {theta} ; %
+ \factoredge {phi} {X-f} {X} ; %
+ \factoredge {aphi} {phi-f} {phi} ; %
+
+ \gate {X-gate} {(X-f)(X-f-caption)} {T}
+
+ \plate {plate1} { %
+ (X)(X-gate) %
+ (T)(T-f)(T-f-caption) %
+ } {$\forall 1 \leq i \leq n_d$}; %
+ \plate {} { %
+ (plate1) %
+ (theta)(theta-f)(theta-f-caption) %
+ } {$\forall d \in \mathcal{D}$} ; %
+ \plate {} { %
+ (phi)(phi-f)(phi-f-caption) %
+ } {$\forall t \in \mathcal{T}$} ; %
+
+\end{tikzpicture}
+%\endpgfgraphicnamed
+
+%%% Local Variables:
+%%% mode: tex-pdf
+%%% TeX-master: "example"
+%%% End:
diff --git a/Master/texmf-dist/doc/latex/tikz-bayesnet/model_pca.tex b/Master/texmf-dist/doc/latex/tikz-bayesnet/model_pca.tex
new file mode 100644
index 00000000000..6385827bff2
--- /dev/null
+++ b/Master/texmf-dist/doc/latex/tikz-bayesnet/model_pca.tex
@@ -0,0 +1,36 @@
+% model_pca.tex
+%
+% Copyright (C) 2012 Jaakko Luttinen
+%
+% This file may be distributed and/or modified
+%
+% 1. under the LaTeX Project Public License and/or
+% 2. under the GNU General Public License.
+%
+% See the files LICENSE_LPPL and LICENSE_GPL for more details.
+
+% PCA model
+
+%\beginpgfgraphicnamed{model-pca}
+\begin{tikzpicture}
+
+ % Define nodes
+ \node[obs] (y) {$y$};
+ \node[latent, above=of y, xshift=-1.2cm] (w) {$\mathbf{w}$};
+ \node[latent, above=of y, xshift=1.2cm] (x) {$\mathbf{x}$};
+ \node[latent, right=2cm of y] (t) {$\tau$};
+
+ % Connect the nodes
+ \edge {x,w,t} {y} ; %
+
+ % Plates
+ \plate {yx} {(x)(y)} {$N$} ;
+ \plate {} {(w)(y)(yx.north west)(yx.south west)} {$M$} ;
+
+\end{tikzpicture}
+%\endpgfgraphicnamed
+
+%%% Local Variables:
+%%% mode: tex-pdf
+%%% TeX-master: "example"
+%%% End:
diff --git a/Master/texmf-dist/doc/latex/tikz-bayesnet/model_pca2.tex b/Master/texmf-dist/doc/latex/tikz-bayesnet/model_pca2.tex
new file mode 100644
index 00000000000..188d030ad42
--- /dev/null
+++ b/Master/texmf-dist/doc/latex/tikz-bayesnet/model_pca2.tex
@@ -0,0 +1,71 @@
+% model_pca2.tex
+%
+% Copyright (C) 2010,2011 Laura Dietz
+% Copyright (C) 2012 Jaakko Luttinen
+%
+% This file may be distributed and/or modified
+%
+% 1. under the LaTeX Project Public License and/or
+% 2. under the GNU General Public License.
+%
+% See the files LICENSE_LPPL and LICENSE_GPL for more details.
+
+% PCA model
+
+%\beginpgfgraphicnamed{model-pca}
+\begin{tikzpicture}
+
+ % Define nodes
+
+ % Y
+ \node[obs] (y) {$y$}; %
+ \factor[above=of y] {y-f} {left:$\mathcal{N}$} {} {} ; %
+
+ % W and X
+ \node[det, above=of y] (dot) {dot} ; %
+ \node[latent, above left=1.2 of dot] (w) {$\mathbf{w}$}; %
+ \node[latent, above right=1.2 of dot] (x) {$\mathbf{x}$}; %
+
+ % W hyperparameters
+ \node[const, above=1.2 of w, xshift=-0.5cm] (mw) {$\mu_w$} ; %
+ \node[const, above=1.2 of w, xshift=0.5cm] (aw) {$\alpha_w$} ; %
+
+ % X hyperparameters
+ \node[const, above=1.2 of x, xshift=-0.5cm] (mx) {$\mu_x$} ; %
+ \node[const, above=1.2 of x, xshift=0.5cm] (ax) {$\alpha_x$} ; %
+
+ % noise
+ \node[latent, right=2.5cm of y-f] (t) {$\tau$}; %
+ \node[const, above=of t, xshift=-0.5cm] (at) {$\alpha_\tau$} ; %
+ \node[const, above=of t, xshift=0.5cm] (bt) {$\beta_\tau$} ; %
+
+ % Factors
+ \factor[above=of w] {w-f} {left:$\mathcal{N}$} {mw,aw} {w} ; %
+ \factor[above=of x] {x-f} {left:$\mathcal{N}$} {mx,ax} {x} ; %
+ \factor[above=of t] {t-f} {left:$\mathcal{G}$} {at,bt} {t} ; %
+ \factoredge {dot,t} {y-f} {y} ; %
+
+ % Connect w and x to the dot node
+ \edge[-] {w,x} {dot} ;
+
+ % Plates
+ \plate {yx} { %
+ (y)(y-f)(y-f-caption) %
+ (x)(x-f)(x-f-caption) %
+ (dot) %
+ } {$N$} ;
+ \plate {} {%
+ (y)(y-f)(y-f-caption) %
+ (w)(w-f)(w-f-caption) %
+ (dot) %
+ (yx.north west)(yx.south west) %
+ } {$M$} ;
+
+\end{tikzpicture}
+%\endpgfgraphicnamed
+
+%%% Local Variables:
+%%% mode: tex-pdf
+%%% TeX-master: "example"
+%%% End:
+
diff --git a/Master/texmf-dist/doc/latex/tikz-bayesnet/tikzlibrarybayesnet.code.tex b/Master/texmf-dist/doc/latex/tikz-bayesnet/tikzlibrarybayesnet.code.tex
new file mode 100644
index 00000000000..4253532c9f2
--- /dev/null
+++ b/Master/texmf-dist/doc/latex/tikz-bayesnet/tikzlibrarybayesnet.code.tex
@@ -0,0 +1,140 @@
+% tikzlibrary.code.tex
+%
+% Copyright 2010-2011 by Laura Dietz
+% Copyright 2012 by Jaakko Luttinen
+%
+% This file may be distributed and/or modified
+%
+% 1. under the LaTeX Project Public License and/or
+% 2. under the GNU General Public License.
+%
+% See the files LICENSE_LPPL and LICENSE_GPL for more details.
+
+% Load other libraries
+\usetikzlibrary{shapes}
+\usetikzlibrary{fit}
+\usetikzlibrary{chains}
+\usetikzlibrary{arrows}
+
+% Latent node
+\tikzstyle{latent} = [circle,fill=white,draw=black,inner sep=1pt,
+minimum size=20pt, font=\fontsize{10}{10}\selectfont, node distance=1]
+% Observed node
+\tikzstyle{obs} = [latent,fill=gray!25]
+% Constant node
+\tikzstyle{const} = [rectangle, inner sep=0pt, node distance=1]
+% Factor node
+\tikzstyle{factor} = [rectangle, fill=black,minimum size=5pt, inner
+sep=0pt, node distance=0.4]
+% Deterministic node
+\tikzstyle{det} = [latent, diamond]
+
+% Plate node
+\tikzstyle{plate} = [draw, rectangle, rounded corners, fit=#1]
+% Invisible wrapper node
+\tikzstyle{wrap} = [inner sep=0pt, fit=#1]
+% Gate
+\tikzstyle{gate} = [draw, rectangle, dashed, fit=#1]
+
+% Caption node
+\tikzstyle{caption} = [font=\footnotesize, node distance=0] %
+\tikzstyle{plate caption} = [caption, node distance=0, inner sep=0pt,
+below left=5pt and 0pt of #1.south east] %
+\tikzstyle{factor caption} = [caption] %
+\tikzstyle{every label} += [caption] %
+
+\tikzset{>={triangle 45}}
+
+%\pgfdeclarelayer{b}
+%\pgfdeclarelayer{f}
+%\pgfsetlayers{b,main,f}
+
+% \factoredge [options] {inputs} {factors} {outputs}
+\newcommand{\factoredge}[4][]{ %
+ % Connect all nodes #2 to all nodes #4 via all factors #3.
+ \foreach \f in {#3} { %
+ \foreach \x in {#2} { %
+ \draw[-,#1] (\x) edge[-] (\f) ; %
+ } ;
+ \foreach \y in {#4} { %
+ \draw[->,#1] (\f) -- (\y) ; %
+ } ;
+ } ;
+}
+
+% \edge [options] {inputs} {outputs}
+\newcommand{\edge}[3][]{ %
+ % Connect all nodes #2 to all nodes #3.
+ \foreach \x in {#2} { %
+ \foreach \y in {#3} { %
+ \draw[->,#1] (\x) -- (\y) ;%
+ } ;
+ } ;
+}
+
+% \factor [options] {name} {caption} {inputs} {outputs}
+\newcommand{\factor}[5][]{ %
+ % Draw the factor node. Use alias to allow empty names.
+ \node[factor, label={[name=#2-caption]#3}, name=#2, #1,
+ alias=#2-alias] {} ; %
+ % Connect all inputs to outputs via this factor
+ \factoredge {#4} {#2-alias} {#5} ; %
+}
+
+% \plate [options] {name} {fitlist} {caption}
+\newcommand{\plate}[4][]{ %
+ \node[wrap=#3] (#2-wrap) {}; %
+ \node[plate caption=#2-wrap] (#2-caption) {#4}; %
+ \node[plate=(#2-wrap)(#2-caption), #1] (#2) {}; %
+}
+
+% \gate [options] {name} {fitlist} {inputs}
+\newcommand{\gate}[4][]{ %
+ \node[gate=#3, name=#2, #1, alias=#2-alias] {}; %
+ \foreach \x in {#4} { %
+ \draw [-*,thick] (\x) -- (#2-alias); %
+ } ;%
+}
+
+% \vgate {name} {fitlist-left} {caption-left} {fitlist-right}
+% {caption-right} {inputs}
+\newcommand{\vgate}[6]{ %
+ % Wrap the left and right parts
+ \node[wrap=#2] (#1-left) {}; %
+ \node[wrap=#4] (#1-right) {}; %
+ % Draw the gate
+ \node[gate=(#1-left)(#1-right)] (#1) {}; %
+ % Add captions
+ \node[caption, below left=of #1.north ] (#1-left-caption)
+ {#3}; %
+ \node[caption, below right=of #1.north ] (#1-right-caption)
+ {#5}; %
+ % Draw middle separation
+ \draw [-, dashed] (#1.north) -- (#1.south); %
+ % Draw inputs
+ \foreach \x in {#6} { %
+ \draw [-*,thick] (\x) -- (#1); %
+ } ;%
+}
+
+% \hgate {name} {fitlist-top} {caption-top} {fitlist-bottom}
+% {caption-bottom} {inputs}
+\newcommand{\hgate}[6]{ %
+ % Wrap the left and right parts
+ \node[wrap=#2] (#1-top) {}; %
+ \node[wrap=#4] (#1-bottom) {}; %
+ % Draw the gate
+ \node[gate=(#1-top)(#1-bottom)] (#1) {}; %
+ % Add captions
+ \node[caption, above right=of #1.west ] (#1-top-caption)
+ {#3}; %
+ \node[caption, below right=of #1.west ] (#1-bottom-caption)
+ {#5}; %
+ % Draw middle separation
+ \draw [-, dashed] (#1.west) -- (#1.east); %
+ % Draw inputs
+ \foreach \x in {#6} { %
+ \draw [-*,thick] (\x) -- (#1); %
+ } ;%
+}
+