cell 1.28/2.03 (22jul09)

git-svn-id: svn://tug.org/texlive/trunk@14400 c570f23f-e606-0410-a88d-b1316a301751

6 files changed, 1575 insertions, 1 deletions

diff --git a/Master/texmf-dist/bibtex/bst/cell/cell.bst b/Master/texmf-dist/bibtex/bst/cell/cell.bst
new file mode 100644
index 00000000000..8efb027ad56
--- /dev/null
+++ b/Master/texmf-dist/bibtex/bst/cell/cell.bst
@@ -0,0 +1,1464 @@
+% BibTex `cell' bibliography style
+%    version = 1.28 of cell.bst 2009 Jul 21
+% 2009 Jul 21, 1.28 upgrade documentation
+% 2009 Jul 13, 1.27 suppress notes in article
+% 2009 Jul 11, 1.26 upgrade to modern cell: &->and, give titles, \emph{vol}
+% 1994 Oct 15, 1.25 from version = 1.27 of jmb.bst 1992 October 22
+
+% This bibliography style is for the journal Cell.
+% http://www.cell.com/
+
+% Dr. Thomas D. Schneider
+% National Institutes of Health
+% schneidt@mail.nih.gov
+% toms@alum.mit.edu (permanent)
+% http://alum.mit.edu/www/toms 
+
+% previous history:
+%
+% conversion from JMB to Cell by:
+% changing emphasis to roman (\em to \rm)
+% bold face to roman (\bf to \rm) (on volume)
+% making the volume be italics
+% removing the comma after the journal name
+%
+% Thomas Schneider
+% National Cancer Institute
+% Laboratory of Mathematical Biology
+% Frederick, Maryland  21702-1013
+% toms@ncifcrf.gov
+%
+% This file is available by anonymous ftp from ncifcrf.gov in pub/delila.
+%
+% TITLES can be turned on and off!
+%      Just nocite the reference TitlesOn in the paper (i.e. \nocite{TitlesOn})
+%      and have a bibliography article in your database with that cite key!
+%
+% WARNING: Since I use mostly article, book and inproceedings, these
+% are formatted pretty closely to the Journal of Theoretical Biology style
+% while other things are neglected.  Also, I can't guarantee that the style
+% is exactly right.
+%
+% The following documentation is identical from the source of jmb.bst,
+% which was the apalike.bst taken from the Clarkson archive on 1989 June 19.
+%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+% BibTeX `apalike' bibliography style (24-Jan-88 version)
+% Adapted from the `alpha' style, version 0.99a; for BibTeX version 0.99a.
+% Copyright (C) 1988, all rights reserved.
+% Copying of this file is allowed, provided that if you make any changes at all
+% you name it something other than `apalike.bst'.
+% This restriction helps ensure that all copies are identical.
+% Differences between this style and `alpha' are generally heralded by a `%'.
+% The file btxbst.doc has the documentation for alpha.bst.
+%
+% This style should be used with the `apalike' LaTeX style (apalike.sty).
+% \cite's come out like "(Jones, 1986)" in the text but there are no labels
+% in the bibliography, and something like "(1986)" comes out immediately
+% after the author.  Author (and editor) names appear as last name, comma,
+% initials.  A `year' field is required for every entry, and so is either
+% an author (or in some cases, an editor) field or a key field.
+%
+% Editorial note:
+% Many journals require a style like `apalike', but I strongly, strongly,
+% strongly recommend that you not use it if you have a choice---use something
+% like `plain' instead.  Mary-Claire van Leunen (A Handbook for Scholars,
+% Knopf, 1979) argues convincingly that a style like `plain' encourages better
+% writing than one like `apalike'.  Furthermore the strongest arguments for
+% using an author-date style like `apalike'---that it's "the most practical"
+% (The Chicago Manual of Style, University of Chicago Press, thirteenth
+% edition, 1982, pages 400--401)---fall flat on their face with the new
+% computer-typesetting technology.  For instance page 401 anachronistically
+% states "The chief disadvantage of [a style like `plain'] is that additions
+% or deletions cannot be made after the manuscript is typed without changing
+% numbers in both text references and list."  LaTeX sidesteps the disadvantage.
+%
+% History:
+%   15-sep-86	(SK,OP)	Original version, by Susan King and Oren Patashnik.
+%   10-nov-86	(OP)	Truncated the sort.key$ string to the correct length
+%			in bib.sort.order to eliminate error message.
+%   24-jan-88	(OP)	Updated for BibTeX version 0.99a, from alpha.bst 0.99a;
+%			apalike now sorts by author, then year, then title;
+%			THIS `apalike' VERSION DOES NOT WORK WITH BIBTEX 0.98i.
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%
+% The program was further modified by Tom Schneider:
+%
+%   1989 June 19 (TDS)  Renamed jmb.bst.  Items that do not have years were
+%        listed in the bibliography without identifiers.  However, they
+%        have identifiers in the text.  The identifier was added.
+%        Titles were removed :-(.
+%
+%   1989 October 2 (TDS)  Made labels in the paper use the & symbol rather
+%                  than `and', as required by JMB.
+%   1989 October 3 (TDS)  Made et~al. be in italics.
+%                  Removed comma after journal name.  (actually, all
+%                  mid sentence commas go!)
+%                  Made volume number be bold faced.
+%                  Converted colon (:) after volume number to a comma (,).
+%                  If a journal name does NOT end in a period, add
+%                  a comma after the name.
+%   1989 October 14 (TDS)  Without a year the program used to sort on the
+%                   title.  I made it sort on the cite$ if there is no year.
+%   1989 October 18 (TDS)  If there is one reference without a year, put
+%                   an "a" at the end of its label, so that it comes out
+%                   as (Smith, a) in the text.  in FUNCTION {forward.pass}
+%   1989 November 2 (TDS)  Unpublished papers now give the title.
+%   1989 November 18 (TDS)  TITLES can be turned on and off!
+%                   Just nocite the reference TitlesOn in the paper
+%                   and have a bibliography article in your database
+%                   with that cite key!
+%   1989 December 5 (TDS)  I can't stand sorting to fall back on the
+%                   titles of the article - no control!  So in function
+%                   bib.sort.order the default is now cite$.
+%   1990 November 14 (TDS) Changes to match JTB better:
+%                    Names in the bibliography are now connected
+%                    with "\&" instead of "and", since this fits JTB better.
+%                    "In" is now "In:".
+%                    "editors" and "editor" are now "eds" and "ed".
+%                    booktitle follows editors.  editors in parenthesis.
+%                    pp. and p. instead of pages and page.
+%                    location followed by colon (:) and then publisher.
+%   1992 October 22  (TDS) Publisher address is at the end of books.
+%                    with no colon after address.
+%                    no comma before & in name list in bibliography.
+%                    The extra.label (as the a of 1991a) is emphasized.
+%                    "In:" goes back to "In"!
+%                    publisher address is at the end of inproceedings.
+%                    volume is "vol.", with comma after number.
+%                    ed.", and comma after ) closing editors.
+%                    as a colon (:), JMB does NOT want the next
+%                    ed, but the format.title function uses
+%                    which leaves it capitalized.  To fix this, a
+%                    place change.case$ must be written.
+%
+%                    When a title has a colon (:), JMB does NOT want the next
+%                    word capitalized, but the format.title function uses
+%                    change.case$, which leaves it capitalized.  To fix this, a
+%                    function to replace change.case$ was written:
+%                    special.change.case
+%
+%                    edition should follow TITLE for books!
+
+% possible bug:  sorting order probably should be first author followed
+% by year; but this is not absolutely clear.  Sorting here is (I think)
+% by all authors (or perhaps the key) then year.
+
+
+ENTRY  % declare variables that have a value for each entry on the list
+  { address
+    author
+    booktitle
+    chapter
+    edition
+    editor
+    howpublished
+    institution
+    journal
+    key
+%    month                not used in apalike
+    note
+    number
+    organization
+    pages
+    publisher
+    school
+    series
+    title
+    type
+    volume
+    year
+  }
+  {}
+  { label extra.label sort.label }
+
+INTEGERS { output.state before.all mid.sentence after.sentence after.block
+           docomma givetitles }
+
+FUNCTION {init.state.consts}
+{ #0 'before.all :=
+  #1 'mid.sentence :=
+  #2 'after.sentence :=
+  #3 'after.block :=
+
+  #0 'docomma :=    % if it is 0 then don't do commas, otherwise do them.
+}
+
+FUNCTION {init.toggle.switches}
+{% set switches for controlling the output!
+  #0 'givetitles := % if it is 0 then don't give titles, otherwise do them.
+}
+
+STRINGS { s t }
+
+FUNCTION {output.nonnull}
+{ 's :=
+  output.state mid.sentence =
+% "in of output.nonnull" warning$
+
+% %    { ", " * write$ }  % the comma here is responsible for every comma!
+% %                       % But JMB doesn't want commas, so away it goes!
+%      { " " * write$ }    % That does it!
+
+    { % doing a comma is controlled specifically in JMB using docomma
+      docomma #0 =
+      { " " * write$ }
+      { ", " * write$ }
+      if$
+    }
+    { output.state after.block =
+        { add.period$ write$
+          newline$
+          "\newblock " write$
+        }
+        { output.state before.all =
+            'write$
+            { add.period$ " " * write$ }
+          if$
+        }
+      if$
+      mid.sentence 'output.state :=
+    }
+  if$
+  s
+% "out of output.nonnull" warning$
+}
+
+FUNCTION {output}
+{ duplicate$ empty$
+    'pop$
+    'output.nonnull
+  if$
+}
+
+FUNCTION {output.check}
+{ 't :=
+% "in output.check" warning$
+  duplicate$ empty$
+     {  t "title" =
+           { pop$ } % jmb ignores titles and does not object if missing
+           { pop$ "empty " t * " in " * cite$ * warning$ }
+        if$
+     }
+    'output.nonnull  % block periods
+    % { pop$  } % don't do anything
+  if$
+% "ouT of output.check" warning$
+}
+
+%    t "title" =
+%    { "zowie" warning$ }
+%    {  duplicate$ empty$
+%       { pop$ "EmPtY " t * " in " * cite$ * warning$ }
+%       'output.nonnull
+%    }
+%    if$
+%  if$
+%}
+
+%                			apalike needs this function because
+%					the year has special punctuation;
+%					apalike ignores the month
+FUNCTION {output.year.check}
+{ year empty$
+    {
+      "empty year in " cite$ ", using label: " extra.label * * * warning$
+      write$
+%      " (" extra.label * ")" * % TDS UNemphasized label
+
+% zzz here is the problem:
+% extra.label "BLURB" * warning$
+      " ({\rm{" extra.label * "}})" * % TDS emphasized label
+% "BLORB" warning$
+
+    { label "{\rm{" extra.label "}}" * * * 'label :=}
+% "BLUBEL" warning$
+
+      mid.sentence 'output.state :=
+% "BLIP" warning$
+    }
+    { write$
+
+%      " (" year * extra.label * ")" * % TDS UNemphasized label
+      " (" year * "{\rm{" extra.label "}}" * * * ")" * % TDS emphasized label
+
+      mid.sentence 'output.state :=
+    }
+  if$
+% "POW" warning$
+}
+
+FUNCTION {output.bibitem}
+{ newline$
+  "\bibitem[" write$
+  label write$
+  "]{" write$
+  cite$ write$
+  "}" write$
+  newline$
+  ""
+  before.all 'output.state :=
+}
+
+FUNCTION {fin.entry}
+{ add.period$
+  write$
+  newline$
+}
+
+FUNCTION {new.block}
+{ output.state before.all =
+    'skip$
+    { after.block 'output.state := }
+  if$
+}
+
+FUNCTION {new.sentence}
+{ output.state after.block =
+    'skip$
+    { output.state before.all =
+	'skip$
+	{ after.sentence 'output.state := }
+      if$
+    }
+  if$
+}
+
+FUNCTION {not}
+{   { #0 }
+    { #1 }
+  if$
+}
+
+FUNCTION {and}
+{   'skip$
+    { pop$ #0 }
+  if$
+}
+
+FUNCTION {or}
+{   { pop$ #1 }
+    'skip$
+  if$
+}
+
+FUNCTION {new.block.checkb}
+{ empty$
+  swap$ empty$
+  and
+    'skip$
+    'new.block
+  if$
+}
+
+FUNCTION {field.or.null}
+{ duplicate$ empty$
+    { pop$ "" }
+    'skip$
+  if$
+}
+
+FUNCTION {emphasize}
+{ duplicate$ empty$
+    { pop$ "" }
+    { "{\rm " swap$ * "}" * }
+  if$
+}
+
+INTEGERS { nameptr namesleft numnames }
+
+FUNCTION {format.names}
+{ 's :=
+  #1 'nameptr :=
+  s num.names$ 'numnames :=
+  numnames 'namesleft :=
+    { namesleft #0 > }
+    { s nameptr "{vv~}{ll}{, jj}{, f.}" format.name$ 't :=   % last name first
+      nameptr #1 >
+	{ namesleft #1 >
+	    { ", " * t * }
+	    { numnames #2 >
+%		{ "," * } % remove this comma TDS
+		{ " " * }
+		'skip$
+	      if$
+	      t "others" =
+		{ " {\rm et~al.}" * }
+		%{ " \& " * t * }
+                % 2009 Jul 11: return to 'and'
+		{ " and " * t * }
+	      if$
+	    }
+	  if$
+	}
+	't
+      if$
+      nameptr #1 + 'nameptr :=
+      namesleft #1 - 'namesleft :=
+    }
+  while$
+}
+
+FUNCTION {format.authors}
+{ author empty$
+    { "" }
+    { author format.names }
+  if$
+}
+
+FUNCTION {format.key}			% this function is just for apalike
+{ empty$
+    { key field.or.null }
+    { "" }
+  if$
+}
+
+FUNCTION {format.editors}
+{ editor empty$
+    { "" }
+    { editor format.names
+      editor num.names$ #1 >
+	{ ", eds" * } % TDS
+	{ ", ed." * } % TDS
+      if$
+    }
+  if$
+}
+
+FUNCTION {special.change.case}
+% change the entire string to lower case except
+% for the first letter and things inside {}
+% That is, force the first letter after a colon (:) to be lower case
+% but otherwise use the change.case$ rules.
+{
+% title "t" change.case$ % TDS this line was the original method
+
+% start with the first letter of the title, hang on stack
+title #1 #1 substring$
+
+% unearth this to see the breakpoint
+%"|---|" *
+
+% take the title, change to entire lower case.
+title "l" change.case$
+
+% take from second position of lowered title to end of title
+#2
+global.max$
+substring$
+
+% concatenate first letter to rest of title
+*
+}
+
+FUNCTION {format.title}
+{ title empty$
+    { "" }
+    { % decide whether to give the title or not
+%       givetitles #1 =
+%%       { title "t" change.case$ } % produce the title % TDS original function
+%       { special.change.case } % produce the title
+%       { title pop$ "" }          % don't produce the title
+%       if$
+% 2009 Jul 11: give the title for Cell now
+        title
+    }
+  if$
+}
+
+FUNCTION {n.dashify}
+{ 't :=
+  ""
+    { t empty$ not }
+    { t #1 #1 substring$ "-" =
+	{ t #1 #2 substring$ "--" = not
+	    { "--" *
+	      t #2 global.max$ substring$ 't :=
+	    }
+	    {   { t #1 #1 substring$ "-" = }
+		{ "-" *
+		  t #2 global.max$ substring$ 't :=
+		}
+	      while$
+	    }
+	  if$
+	}
+	{ t #1 #1 substring$ *
+	  t #2 global.max$ substring$ 't :=
+	}
+      if$
+    }
+  while$
+}
+
+FUNCTION {format.btitle}
+{ title emphasize
+}
+
+FUNCTION {tie.or.space.connect}
+{ duplicate$ text.length$ #3 <
+    { "~" }
+    { " " }
+  if$
+  swap$ * *
+}
+
+FUNCTION {either.or.check}
+{ empty$
+    'pop$
+    { "can't use both " swap$ * " fields in " * cite$ * warning$ }
+  if$
+}
+
+FUNCTION {format.bvolume}
+{ volume empty$
+    { "" }
+%    { "volume" volume tie.or.space.connect % TDS
+    { "vol." volume "," * tie.or.space.connect % made vol.
+      series empty$
+	'skip$
+	{ " of " * series emphasize * }
+      if$
+%      "volume and number" number either.or.check % TDS
+      "vol. and num." number either.or.check % made vol.
+    }
+  if$
+}
+
+FUNCTION {format.number.series}
+{ volume empty$
+    { number empty$
+	{ series field.or.null }
+	{ output.state mid.sentence =
+	    { "number" }
+	    { "Number" }
+	  if$
+	  number tie.or.space.connect
+	  series empty$
+	    { "there's a number but no series in " cite$ * warning$ }
+	    { " in " * series * }
+	  if$
+	}
+      if$
+    }
+    { "" }
+  if$
+}
+
+FUNCTION {format.edition}
+{ edition empty$
+    { "" }
+    { output.state mid.sentence =
+	{ edition "l" change.case$ " edition" * }
+	{ edition "t" change.case$ " edition" * }
+      if$
+    }
+  if$
+}
+
+INTEGERS { multiresult }
+
+FUNCTION {multi.page.check}
+{ 't :=
+  #0 'multiresult :=
+    { multiresult not
+      t empty$ not
+      and
+    }
+    { t #1 #1 substring$
+      duplicate$ "-" =
+      swap$ duplicate$ "," =
+      swap$ "+" =
+      or or
+	{ #1 'multiresult := }
+	{ t #2 global.max$ substring$ 't := }
+      if$
+    }
+  while$
+  multiresult
+}
+
+FUNCTION {format.pages}
+{ pages empty$
+    { "" }
+    { pages multi.page.check
+	{ "pp." pages n.dashify tie.or.space.connect } % TDS
+	{ "p." pages tie.or.space.connect } % TDS
+      if$
+    }
+  if$
+}
+
+FUNCTION {format.vol.num.pages}
+% { "{\rm " volume "}" * * field.or.null  % make volume bold face
+{ "\emph{" volume "}" * * field.or.null  % make volume italics 2009 jul 11
+
+% cell does not take numbers
+%  number empty$
+%    'skip$
+%%    { " (" number * ")" * *
+%    { " ({\em " number "\/}" * * ")" * * % CELL IS ITALICS
+%% zzz
+%       volume empty$
+%	{ "there's a number but no volume in " cite$ * warning$ }
+%	'skip$
+%      if$
+%    }
+%  if$
+
+  pages empty$
+    'skip$
+    { duplicate$ empty$
+	{ pop$ format.pages }
+%	{ ":" * pages n.dashify * } % no more colons after the volume
+	{ ", " * pages n.dashify * } % comma's instead
+      if$
+    }
+  if$
+}
+
+FUNCTION {format.chapter.pages}
+{ chapter empty$
+    'format.pages
+    { type empty$
+	{ "chapter" }
+	{ type "l" change.case$ }
+      if$
+      chapter tie.or.space.connect
+      pages empty$
+	'skip$
+	{ ", " * format.pages * }
+      if$
+    }
+  if$
+}
+
+FUNCTION {format.in.ed.booktitle}
+{ booktitle empty$
+    { "" }
+    { editor empty$
+	{ "In " booktitle emphasize * } % TDS
+	{ "In " booktitle emphasize * ", " * % That's the comma after the title
+          "(" format.editors ")," * * * } % TDS
+      if$
+    }
+  if$
+}
+
+FUNCTION {format.thesis.type}
+{ type empty$
+    'skip$
+    { pop$
+      type "t" change.case$
+    }
+  if$
+}
+
+FUNCTION {format.tr.number}
+{ type empty$
+    { "Technical Report" }
+    'type
+  if$
+  number empty$
+    { "t" change.case$ }
+    { number tie.or.space.connect }
+  if$
+}
+
+FUNCTION {format.article.crossref}
+{ "In"				% this is for apalike % TDS
+  " \cite{" * crossref * "}" *
+}
+
+FUNCTION {format.book.crossref}
+{ volume empty$
+    { "empty volume in " cite$ * "'s crossref of " * crossref * warning$
+      "In " % TDS
+    }
+    { "Volume" volume tie.or.space.connect
+      " of " *
+    }
+  if$
+  "\cite{" * crossref * "}" *				% this is for apalike
+}
+
+FUNCTION {format.incoll.inproc.crossref}
+{ "In"				% this is for apalike % TDS
+  " \cite{" * crossref * "}" *
+}
+
+FUNCTION {article}
+{
+  cite$ "TitlesOn" =
+  'skip$ % Don't write out an article of this kind, it's a toggle switch!
+  {
+  output.bibitem
+  format.authors "author" output.check
+  author format.key output				% special for
+% "===> about to" warning$
+  output.year.check					% apalike
+% "===> after it" warning$
+  new.block
+% yyy
+  format.title "title" output.check
+  new.block
+  crossref missing$
+    { % figure out the last character of the journal name.
+      % "<<" journal #-1 #1 substring$ ">>" * *  % for testing
+      % "<" journal ">" * *  % this works ok     % for testing
+
+      journal #-1 #1 substring$ "." =
+      { journal }  % journal ended in period so don't do anything
+%      { journal ", " *}  % journal ended without period, so add comma
+      { journal " " *}  % journal ended without period, so add comma NONE FOR CELL
+      if$
+      emphasize "journal" output.check
+
+%      journal * emphasize "journal" output.check % the original method
+
+      format.vol.num.pages output
+    }
+    { format.article.crossref output.nonnull
+      format.pages output
+    }
+  if$
+%  new.block   % 2009 jul 13: suppress notes
+%  note output % 2009 jul 13: suppress notes
+  fin.entry
+  }
+  if$
+}
+
+FUNCTION {book}
+{ output.bibitem
+  author empty$
+    { format.editors "author and editor" output.check
+      editor format.key output
+    }
+    { format.authors output.nonnull
+      crossref missing$
+	{ "author and editor" editor either.or.check }
+	'skip$
+      if$
+    }
+  if$
+  output.year.check				% special for apalike
+  new.block
+  format.btitle "title" output.check
+  #1 'docomma :=    % TURN COMMAS ON FOR JMB
+  crossref missing$
+    {
+      format.bvolume output
+      new.block
+      format.number.series output
+      format.edition output % TDS JMB position for edition
+%      new.sentence
+%         #0 'docomma := % no comma after address
+%      address ":" * output % TDS
+      publisher "publisher" output.check % TDS
+%         #1 'docomma := % comma back on
+%      publisher "publisher" output.check
+%      address output
+      address output % TDS - no colon!
+    }
+    { new.block
+      format.book.crossref output.nonnull
+    }
+  if$
+%  format.edition output % TDS original position of edition
+  new.block
+  note output
+  fin.entry
+  #0 'docomma :=    % TURN COMMAS OFF
+}
+
+FUNCTION {booklet}
+{ output.bibitem
+  format.authors output
+  author format.key output				% special for
+  output.year.check					% apalike
+  new.block
+  format.title "title" output.check
+  new.block
+  howpublished output
+  address output
+  new.block
+  note output
+  fin.entry
+}
+
+FUNCTION {inbook}
+{ output.bibitem
+  author empty$
+    { format.editors "author and editor" output.check
+      editor format.key output
+    }
+    { format.authors output.nonnull
+      crossref missing$
+	{ "author and editor" editor either.or.check }
+	'skip$
+      if$
+    }
+  if$
+  output.year.check				% special for apalike
+  new.block
+  format.btitle "title" output.check
+  crossref missing$
+    { format.bvolume output
+      format.chapter.pages "chapter and pages" output.check
+      new.block
+      format.number.series output
+      new.sentence
+         #0 'docomma := % no comma after address
+      address ":" * output % TDS
+      publisher "publisher" output.check % TDS
+         #1 'docomma := % comma back on
+%      publisher "publisher" output.check
+%      address output
+    }
+    { format.chapter.pages "chapter and pages" output.check
+      new.block
+      format.book.crossref output.nonnull
+    }
+  if$
+  format.edition output
+  new.block
+  note output
+  fin.entry
+}
+
+FUNCTION {incollection}
+{ output.bibitem
+  format.authors "author" output.check
+  author format.key output				% special for
+  output.year.check					% apalike
+  new.block
+  format.title "title" output.check
+  new.block
+  crossref missing$
+    { format.in.ed.booktitle "booktitle" output.check
+      format.bvolume output
+      format.number.series output
+      format.chapter.pages output
+      new.sentence
+      publisher "publisher" output.check
+      address output
+      format.edition output
+    }
+    { format.incoll.inproc.crossref output.nonnull
+      format.chapter.pages output
+    }
+  if$
+  new.block
+  note output
+  fin.entry
+}
+
+FUNCTION {inproceedings}
+{ output.bibitem
+  format.authors "author" output.check
+  author format.key output				% special for
+  output.year.check					% apalike
+  new.block
+  format.title "title" output.check
+  new.block
+  crossref missing$
+    {
+%      #1 'docomma :=    % TURN COMMAS ON FOR JMB, BUT NOT FOR JTB: inconsistent. TDS NOW
+      format.in.ed.booktitle "booktitle" output.check
+      format.bvolume output
+      format.number.series output
+      format.pages
+        pages empty$
+          { output }
+          { "," * output } % TDS toss in comma instead of period
+        if$
+
+%      address output % TDS address is below for JTB
+%      new.sentence % TDS remove period
+      organization output
+         #0 'docomma := % NO COMMA AFTER ADDRESS
+      publisher "publisher" output.check % TDS
+         #1 'docomma := % comma back on
+
+%      publisher output					% are simpler
+      address output % TDS
+      #0 'docomma :=    % TURN COMMAS OFF
+    }
+    { format.incoll.inproc.crossref output.nonnull
+      format.pages output
+    }
+  if$
+  new.block
+  note output
+  fin.entry
+}
+
+FUNCTION {conference} { inproceedings }
+
+FUNCTION {manual}
+{ output.bibitem
+  format.authors output
+  author format.key output				% special for
+  output.year.check					% apalike
+  new.block
+  format.btitle "title" output.check
+  organization address new.block.checkb
+  organization output
+  address output
+  format.edition output
+  new.block
+  note output
+  fin.entry
+}
+
+FUNCTION {mastersthesis}
+{ output.bibitem
+  format.authors "author" output.check
+  author format.key output				% special for
+  output.year.check					% apalike
+  new.block
+  format.title "title" output.check
+  new.block
+  "Master's thesis" format.thesis.type output.nonnull
+  school "school" output.check
+  address output
+  new.block
+  note output
+  fin.entry
+}
+
+FUNCTION {misc}
+{ output.bibitem
+  format.authors output
+  author format.key output				% special for
+  output.year.check					% apalike
+  new.block
+  format.title output
+  new.block
+  howpublished output
+  new.block
+  note output
+  fin.entry
+}
+
+FUNCTION {phdthesis}
+{ output.bibitem
+  format.authors "author" output.check
+  author format.key output				% special for
+  output.year.check					% apalike
+  new.block
+  format.btitle "title" output.check
+  new.block
+  "PhD thesis," format.thesis.type output.nonnull
+  school "school" output.check
+  address output
+  new.block
+  note output
+  fin.entry
+}
+
+FUNCTION {proceedings}
+{ output.bibitem
+  format.editors output
+  editor format.key output				% special for
+  output.year.check					% apalike
+  new.block
+  format.btitle "title" output.check
+  format.bvolume output
+  format.number.series output
+  address output				% for apalike
+  new.sentence					% we always output
+  organization output				% a nonempty organization
+  publisher output				% here
+  new.block
+  note output
+  fin.entry
+}
+
+FUNCTION {techreport}
+{ output.bibitem
+  format.authors "author" output.check
+  author format.key output				% special for
+  output.year.check					% apalike
+  new.block
+  format.title "title" output.check
+  new.block
+  format.tr.number output.nonnull
+  institution "institution" output.check
+  address output
+  new.block
+  note output
+  fin.entry
+}
+
+FUNCTION {unpublished}
+{ output.bibitem
+  format.authors "author" output.check
+  author format.key output				% special for
+% "===> about to unpuBLISH" warning$
+  output.year.check					% apalike
+% "===> out of to unpuBLISH" warning$
+  new.block
+% "===> PLEASE PLEASE BE HERE" warning$
+
+% Since format.title is out of commission, the original method won't work:
+%  format.title "title" output.check
+% so do the equivalent of the format.title procedure: (TDS)
+  title empty$
+    { "" }
+    { title "t" change.case$ } % produce the title
+  if$
+% "===> perfidity 1" warning$
+  "title" output.check
+% "===> perfidity" warning$
+
+  new.block
+  note "note" output.check
+  fin.entry
+
+% "===> GOlly done" warning$
+}
+
+FUNCTION {default.type} { misc }
+
+MACRO {jan} {"January"}
+
+MACRO {feb} {"February"}
+
+MACRO {mar} {"March"}
+
+MACRO {apr} {"April"}
+
+MACRO {may} {"May"}
+
+MACRO {jun} {"June"}
+
+MACRO {jul} {"July"}
+
+MACRO {aug} {"August"}
+
+MACRO {sep} {"September"}
+
+MACRO {oct} {"October"}
+
+MACRO {nov} {"November"}
+
+MACRO {dec} {"December"}
+
+MACRO {acmcs} {"ACM Computing Surveys"}
+
+MACRO {acta} {"Acta Informatica"}
+
+MACRO {cacm} {"Communications of the ACM"}
+
+MACRO {ibmjrd} {"IBM Journal of Research and Development"}
+
+MACRO {ibmsj} {"IBM Systems Journal"}
+
+MACRO {ieeese} {"IEEE Transactions on Software Engineering"}
+
+MACRO {ieeetc} {"IEEE Transactions on Computers"}
+
+MACRO {ieeetcad}
+ {"IEEE Transactions on Computer-Aided Design of Integrated Circuits"}
+
+MACRO {ipl} {"Information Processing Letters"}
+
+MACRO {jacm} {"Journal of the ACM"}
+
+MACRO {jcss} {"Journal of Computer and System Sciences"}
+
+MACRO {scp} {"Science of Computer Programming"}
+
+MACRO {sicomp} {"SIAM Journal on Computing"}
+
+MACRO {tocs} {"ACM Transactions on Computer Systems"}
+
+MACRO {tods} {"ACM Transactions on Database Systems"}
+
+MACRO {tog} {"ACM Transactions on Graphics"}
+
+MACRO {toms} {"ACM Transactions on Mathematical Software"}
+
+MACRO {toois} {"ACM Transactions on Office Information Systems"}
+
+MACRO {toplas} {"ACM Transactions on Programming Languages and Systems"}
+
+MACRO {tcs} {"Theoretical Computer Science"}
+
+READ
+
+% ***********************************************************
+
+FUNCTION {check.for.titlecommand}
+% go through each entry and see if one of them has the key
+% 'TitlesOn'.  If this is found, then do titles!
+% 1989 November 18 TDS
+{
+%  "|" label "|" * * write$ newline$  % |Arrhenius {\rm et~al.}, 1986|
+%  "|" cite$ "|" * * write$ newline$  % |Arrhenius1986|
+% so cite$ is the thing I want to detect...
+
+  cite$ "TitlesOn" =
+  { % got it!
+%    "FOUND TitlesOn" write$ newline$
+     "Titles Will Be Printed" warning$
+    #1 'givetitles := % give titles!
+  }
+  'skip$
+  if$
+}
+EXECUTE {init.toggle.switches}
+ITERATE {check.for.titlecommand}
+% ***********************************************************
+
+FUNCTION {sortify}
+{ purify$
+  "l" change.case$
+}
+
+INTEGERS { len }
+
+FUNCTION {chop.word}
+{ 's :=
+  'len :=
+  s #1 len substring$ =
+    { s len #1 + global.max$ substring$ }
+    's
+  if$
+}
+
+%			There are three apalike cases: one person (Jones),
+%			two (Jones and de~Bruijn), and more (Jones et~al.).
+%			This function is much like format.crossref.editors.
+%
+FUNCTION {format.lab.names}
+{ 's :=
+  s #1 "{vv~}{ll}" format.name$
+  s num.names$ duplicate$
+  #2 >
+    { pop$ " {\rm et~al.}" * }
+    { #2 <
+	'skip$
+	{ s #2 "{ff }{vv }{ll}{ jj}" format.name$ "others" =
+	    { " {\rm et~al.}" * }
+	    % { " \& " * s #2 "{vv~}{ll}" format.name$ * }
+            % note new use of & rather than `and'.  TDS
+            % 2009 jul 11: return to 'and'
+	    { " and " * s #2 "{vv~}{ll}" format.name$ * }
+	  if$
+	}
+      if$
+    }
+  if$
+}
+
+FUNCTION {author.key.label}
+{ author empty$
+    { key empty$
+	{ cite$ #1 #3 substring$ }
+	'key					% apalike uses the whole key
+      if$
+    }
+    { author format.lab.names }
+  if$
+}
+
+FUNCTION {author.editor.key.label}
+{ author empty$
+    { editor empty$
+	{ key empty$
+	    { cite$ #1 #3 substring$ }
+	    'key				% apalike uses the whole key
+	  if$
+	}
+	{ editor format.lab.names }
+      if$
+    }
+    { author format.lab.names }
+  if$
+}
+
+FUNCTION {editor.key.label}
+{ editor empty$
+    { key empty$
+	{ cite$ #1 #3 substring$ }
+	'key			% apalike uses the whole key, no organization
+      if$
+    }
+    { editor format.lab.names }
+  if$
+}
+
+FUNCTION {calc.label}
+{ type$ "book" =
+  type$ "inbook" =
+  or
+    'author.editor.key.label
+    { type$ "proceedings" =
+	'editor.key.label			% apalike ignores organization
+	'author.key.label			% for labeling and sorting
+      if$
+    }
+  if$
+  ", "							% these three lines are
+  *							% for apalike, which
+  year field.or.null purify$ #-1 #4 substring$		% uses all four digits
+  *
+  'label :=
+}
+
+FUNCTION {sort.format.names}
+{ 's :=
+  #1 'nameptr :=
+  ""
+  s num.names$ 'numnames :=
+  numnames 'namesleft :=
+    { namesleft #0 > }
+    { nameptr #1 >
+	{ "   " * }
+	'skip$
+      if$						% apalike uses initials
+      s nameptr "{vv{ } }{ll{ }}{  f{ }}{  jj{ }}" format.name$ 't := % <= here
+      nameptr numnames = t "others" = and
+	{ "{\rm et al}" * }
+	{ t sortify * }
+      if$
+      nameptr #1 + 'nameptr :=
+      namesleft #1 - 'namesleft :=
+    }
+  while$
+}
+
+FUNCTION {sort.format.title}
+{ 't :=
+  "A " #2
+    "An " #3
+      "The " #4 t chop.word
+    chop.word
+  chop.word
+  sortify
+  #1 global.max$ substring$
+}
+
+FUNCTION {author.sort}
+{ author empty$
+    { key empty$
+	{ "to sort, need author or key in " cite$ * warning$
+	  ""
+	}
+	{ key sortify }
+      if$
+    }
+    { author sort.format.names }
+  if$
+}
+
+FUNCTION {author.editor.sort}
+{ author empty$
+    { editor empty$
+	{ key empty$
+	    { "to sort, need author, editor, or key in " cite$ * warning$
+	      ""
+	    }
+	    { key sortify }
+	  if$
+	}
+	{ editor sort.format.names }
+      if$
+    }
+    { author sort.format.names }
+  if$
+}
+
+FUNCTION {editor.sort}
+{ editor empty$
+    { key empty$
+	{ "to sort, need editor or key in " cite$ * warning$
+	  ""
+	}
+	{ key sortify }
+      if$
+    }
+    { editor sort.format.names }
+  if$
+}
+
+%			apalike uses two sorting passes; the first one sets the
+%			labels so that the `a's, `b's, etc. can be computed;
+%			the second pass puts the references in "correct" order.
+%			The presort function is for the first pass. It computes
+%			label, sort.label, and title, and then concatenates.
+FUNCTION {presort}
+{ calc.label
+  label sortify
+  "    "
+  *
+  type$ "book" =
+  type$ "inbook" =
+  or
+    'author.editor.sort
+    { type$ "proceedings" =
+	'editor.sort
+	'author.sort
+      if$
+    }
+  if$
+  #1 entry.max$ substring$	% for
+  'sort.label :=		% apalike
+  sort.label			% style
+  *
+  "    "
+  *
+  title field.or.null
+  sort.format.title
+  *
+  #1 entry.max$ substring$
+  'sort.key$ :=
+}
+
+ITERATE {presort}
+
+SORT		% by label, sort.label, title---for final label calculation
+
+STRINGS { last.label next.extra }	% apalike labels are only for the text;
+
+INTEGERS { last.extra.num }		% there are none in the bibliography
+
+FUNCTION {initialize.extra.label.stuff}	% and hence there is no `longest.label'
+{ #0 int.to.chr$ 'last.label :=
+  "" 'next.extra :=
+  #0 'last.extra.num :=
+}
+
+FUNCTION {forward.pass}
+% pass through the references forward
+{
+%"\\     label=" label "//" * * write$ newline$ % display the label
+%"\\last.label=" last.label "//" * * write$ newline$ % display the label
+
+ last.label label =   % if the label repeats the previous label...
+    { % then increment the extra number
+      last.extra.num #1 + 'last.extra.num :=
+      % and convert it to a label
+      last.extra.num int.to.chr$ 'extra.label :=
+    }
+    { % else set things up for the next entry
+      "a" chr.to.int$ 'last.extra.num :=
+
+      % However, if the year was missing, tack on an extra "a". TDS
+      year empty$
+      {"a" 'extra.label :=}
+      {"" 'extra.label :=}
+      if$
+
+%      "" 'extra.label :=  % the original method was not to do anything TDS
+
+      label 'last.label :=   % capture this label for next time
+    }
+  if$
+%"\\extra.label = " extra.label "//" * * write$ newline$ % display the label
+}
+
+FUNCTION {reverse.pass}
+% pass through the references backwards
+% add extra characters to the end of the label string
+{
+%"{{" label "}}" * * write$ newline$ % display the label
+ next.extra "b" =
+% original logic:
+    { "a" 'extra.label := }
+    'skip$
+    if$
+
+% next.extra "b" = { "next.extra was = b" write$ newline$} 'skip$ if$
+
+% new as of 1989 Oct 18
+%    { "a" 'extra.label := }
+%    { % Put on an "a" at the end of the label if the year is missing. TDS
+%      year empty$
+%       { "a" 'extra.label := }
+%       %{ label "a" * 'label := }
+%       'skip$ % otherwise leave it alone (orignial method)
+%     if$ }
+%  if$
+
+%  label extra.label * 'label := % TDS ORIGINAL LABEL METHOD
+
+% stick {\rm } around extra.label if it's not empty TDS
+  extra.label "" =
+    'skip$
+    { label "{\rm{" extra.label "}}" * * * 'label :=}
+  if$
+
+  extra.label 'next.extra :=
+%"{{" label "}}" * * write$ newline$ % display the label
+}
+
+FUNCTION {bib.sort.order}
+% Generate the sort.key$ variables for sorting.
+% The sorting is first on the sort.label (ie, author's name), followed
+% by the year then the title.  If there is no year, the cite$ is used.
+{
+  sort.label  % this is based on the author name
+  "    " * % tack on some space
+% original apa command was to use the year or an empty string:
+%  year field.or.null sortify
+% 
+% Replace that with the use of the cite$, when there is no year:
+  year duplicate$ empty$
+     {pop$ cite$}
+     'skip$
+  if$
+
+  * "    " *  % tack on some space
+
+% I CAN'T STAND SORTING ON TITLE!!! TDS 1989 Dec 5
+%  title field.or.null
+%  sort.format.title
+%  * % attach them together
+  cite$
+  * % use cite$ instead!!
+
+  % note: if there is no year, then the cite$ will override the sorting
+  % on the title.  Oh well.  Title sorting is sorta (ha ha) awful.
+
+  #1 entry.max$ substring$
+  'sort.key$ :=
+
+  % The following line helps debug the program.  It shows what the sort.key$ is.
+  % "%" sort.key$ * write$ newline$
+}
+
+% Here is the place that the actual executions of the labeling and sorting
+% functions are done.
+
+
+EXECUTE {initialize.extra.label.stuff} % initialize variables
+ITERATE {bib.sort.order}               % set up the sorting keys
+SORT		% by sort.label, year, title---giving final bibliography order
+% Having sorted NOW we apply the extra letters at the end!
+ITERATE {forward.pass}
+REVERSE {reverse.pass}
+
+FUNCTION {begin.bib}
+{ preamble$ empty$				% no \etalchar in apalike
+    'skip$
+    { preamble$ write$ newline$ }
+  if$
+  "\begin{thebibliography}{}" write$ newline$		% no labels in apalike
+}
+
+EXECUTE {begin.bib}
+
+EXECUTE {init.state.consts}
+
+ITERATE {call.type$}
+
+FUNCTION {end.bib}
+{ newline$
+  "\end{thebibliography}" write$ newline$
+}
+
+EXECUTE {end.bib}
diff --git a/Master/texmf-dist/doc/latex/cell/README b/Master/texmf-dist/doc/latex/cell/README
new file mode 100644
index 00000000000..bd85dc94607
--- /dev/null
+++ b/Master/texmf-dist/doc/latex/cell/README
@@ -0,0 +1,10 @@
+for the journal Cell
+http://www.cell.com/
+cell.bst
+cell.sty
+
+  Dr. Thomas D. Schneider
+  National Institutes of Health
+  schneidt@mail.nih.gov
+  toms@alum.mit.edu (permanent)
+  http://alum.mit.edu/www/toms 
diff --git a/Master/texmf-dist/tex/latex/cell/cell.sty b/Master/texmf-dist/tex/latex/cell/cell.sty
new file mode 100644
index 00000000000..b43a060f85c
--- /dev/null
+++ b/Master/texmf-dist/tex/latex/cell/cell.sty
@@ -0,0 +1,99 @@
+%    version = 2.03 of cell.sty 2009 Jul 21
+% 2009 Jul 21, 2.03: upgrade documentation
+% 2009 Jul 15, 2.02: no bib indent
+% 2009 Jul 14, 2.01: simplify
+% 2009 Jul 13, 2.00: modernize to match current version of Cell
+% 1998 Mar  3, 1.00: original version of cell.sty
+
+%   Dr. Thomas D. Schneider
+%   National Institutes of Health
+%   schneidt@mail.nih.gov
+%   toms@alum.mit.edu (permanent)
+%   http://alum.mit.edu/www/toms 
+
+% This is a simple style file for the journal Cell.
+% http://www.cell.com/
+
+% change commas to semicolons between references in text:
+% \RequirePackageWithOptions[nosort,nocompress]{cite} % crashes
+\RequirePackage{cite}
+
+% \renewcommand\citepunct{;~}
+\renewcommand\citepunct{;\ } % to allow line breaks in the best place.
+
+% Use parens instead of brackets for \cite
+\renewcommand\citeleft{(}
+\renewcommand\citeright{)}
+
+% no label in the bibliography
+% \def\@biblabel#1{} % that would indent
+\def\@biblabel#1{\hspace{-\labelsep}} % avoid bib indent
+
+% Thanks for suggestions from Donald Arseneau:
+% http://tug.org/pipermail/texhax/2009-July/012892.html
+
+% ******************************************************************************
+
+% old history:
+% cell.sty is the same as jmb.sty,
+% which is identical to apalike.sty 1989 June 19
+%
+% apalike.sty style, used in conjunction with apalike.bst,
+% will produce an apa-like bibliography style:
+%
+% 1) Bibliography entries formatted alphabetically, last name
+%    first, each entry having a hanging indentation and no label.
+% 2) References in the following formats:
+%		(Author, 1986)
+%		(Author and Author, 1986)
+%		(Author et al., 1986).
+% 3) Multiple references in the form (Author1, 1986; Author2, 1987)
+%
+% To be used as an optional argument to the \documentstyle command; for example
+%	\documentstyle[11pt,apalike]{book}
+%
+% 16-Sep-86, original version by Susan King and Oren Patashnik.
+% 13-Oct-87 changes:
+%	Fixed bug in last line by adding the {} that disappeard when
+%		the \hbox{} was removed from the pre-APALIKE definition;
+%	added club and widow penalties;
+%	patched the \newblock LaTeX bug from `-.07em' to simply `.07em';
+%	and made this work for document styles that don't define `chapter'.
+
+% 2009 Jul 13
+% OLD CODE:
+
+% 2009 jul 13: bibliography does not hang in cell anymore!
+% Set length of hanging indentation for bibliography entries
+%
+%\newlength{\bibhang}
+%\setlength{\bibhang}{2em}
+%
+% \thebibliography environment depends on whether or not `chapter's can exist
+%
+%\@ifundefined{chapter}{\def\thebibliography#1{\section*{References\@mkboth
+% \@ifundefined{chapter}{\def\thebibliography#1{\section*{{\bf References}\@mkboth
+%   {REFERENCES}{REFERENCES}}\list
+%   {\relax}{\setlength{\labelsep}{0em}
+% 	\setlength{\itemindent}{-\bibhang}
+% 	\setlength{\leftmargin}{\bibhang}}
+%     \def\newblock{\hskip .11em plus .33em minus .07em}
+%     \sloppy\clubpenalty4000\widowpenalty4000
+%     \sfcode`\.=1000\relax}}%
+% {\def\thebibliography#1{\chapter*{Bibliography\@mkboth
+%   {BIBLIOGRAPHY}{BIBLIOGRAPHY}}\list
+%   {\relax}{\setlength{\labelsep}{0em}
+% 	\setlength{\itemindent}{-\bibhang}
+% 	\setlength{\leftmargin}{\bibhang}}
+%     \def\newblock{\hskip .11em plus .33em minus .07em}
+%     \sloppy\clubpenalty4000\widowpenalty4000
+%     \sfcode`\.=1000\relax}}
+
+% `; ' goes between cites, and there's no \hbox around individual cites
+%
+% \def\@citex[#1]#2{\if@filesw\immediate\write\@auxout{\string\citation{#2}}\fi
+%   \def\@citea{}\@cite{\@for\@citeb:=#2\do
+%     {\@citea\def\@citea{; }\@ifundefined
+%        {b@\@citeb}{{\bf ?}\@warning
+%        {Citation `\@citeb' on page \thepage \space undefined}}%
+% {\csname b@\@citeb\endcsname}}}{#1}}
diff --git a/Master/tlpkg/bin/tlpkg-ctan-check b/Master/tlpkg/bin/tlpkg-ctan-check
index 788e4bee557..c5b858e70ba 100755
--- a/Master/tlpkg/bin/tlpkg-ctan-check
+++ b/Master/tlpkg/bin/tlpkg-ctan-check
@@ -46,7 +46,7 @@ my @WorkingTLP = qw(
           boxhandler bpchem breakurl bullcntr bussproofs bytefield 
         calctab calligra calrsfs captcont caption carlisle casyl
           catechis carolmin-ps 
-          cbcoptic cbfonts ccaption cclicenses cd cdpbundl cellspace
+          cbcoptic cbfonts ccaption cclicenses cd cdpbundl cell cellspace
           changebar changelayout changepage changes chappg chapterfolder
           chem-journal chembst chemcompounds
           chemstyle cherokee chess-problem-diagrams chessboard chessfss
diff --git a/Master/tlpkg/tlpsrc/cell.tlpsrc b/Master/tlpkg/tlpsrc/cell.tlpsrc
new file mode 100644
index 00000000000..e69de29bb2d
--- /dev/null
+++ b/Master/tlpkg/tlpsrc/cell.tlpsrc
diff --git a/Master/tlpkg/tlpsrc/collection-bibtexextra.tlpsrc b/Master/tlpkg/tlpsrc/collection-bibtexextra.tlpsrc
index 140eec3f06d..517f63f6a76 100644
--- a/Master/tlpkg/tlpsrc/collection-bibtexextra.tlpsrc
+++ b/Master/tlpkg/tlpsrc/collection-bibtexextra.tlpsrc
@@ -11,6 +11,7 @@ depend biblist
 depend bibtopic
 depend bibtopicprefix
 depend bibunits
+depend cell
 depend chicago
 depend chicago-annote
 depend chembst