1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
|
#!/usr/bin/env perl
=pod
=head1 NAME
ltx2crossrefxml.pl - create XML files for submitting to crossref.org
=head1 SYNOPSIS
ltx2crossrefxml [B<-c> I<config_file>] [B<-o> I<output_file>] [B<-input-is-xml>]
I<latex_file1> I<latex_file2> ...
=head1 OPTIONS
=over 4
=item B<-c> I<config_file>
Configuration file. If this file is absent, defaults are used.
See below for its format.
=item B<-o> I<output_file>
Output file. If this option is not used, the XML is output to stdout.
=item B<-rpi-is-xml>
Do not transform author and title input strings, assume they are valid XML.
=back
The usual C<--help> and C<--version> options are also supported. Options
can begin with either C<-> or C<-->, and ordered arbitrarily.
=head1 DESCRIPTION
For each given I<latex_file>, this script reads C<.rpi> and (if they
exist) C<.bbl> files and outputs corresponding XML that can be uploaded
to Crossref (L<https://crossref.org>). Any extension of I<latex_file> is
ignored, and I<latex_file> itself is not read (and need not even exist).
Each C<.rpi> file specifies the metadata for a single article to be
uploaded to Crossref (a C<journal_article> element in their schema); an
example is below. These files are output by the C<resphilosophica>
package (L<https://ctan.org/pkg/resphilosophica>), but (as always) can
also be created by hand or by whatever other method you implement.
Any C<.bbl> files present are used for the citation information in the
output XML. See the L<CITATIONS> section below.
Unless C<--rpi-is-xml> is specified, for all text (authors, title,
citations), standard TeX control sequences are replaced with plain text
or UTF-8 or eliminated, as appropriate. The C<LaTeX::ToUnicode::convert>
routine is used for this (L<https://ctan.org/pkg/bibtexperllibs>).
Tricky TeX control sequences will almost surely not be handled
correctly. If C<--rpi-is-xml> is given, the author and title strings
from the rpi files are output as-is, assuming they are valid XML; no
checking is done. Citation text from C<.bbl> files is always converted
from LaTeX to plain text.
This script just writes an XML file. It's up to you to actually do the
uploading to Crossref; for example, you can use their Java tool
C<crossref-upload-tool.jar>
(L<https://www.crossref.org/education/member-setup/direct-deposit-xml/https-post>).
For the definition of their schema, see
L<https://data.crossref.org/reports/help/schema_doc/4.4.2/index.html>
(this is the schema version currently followed by this script).
=head1 CONFIGURATION FILE FORMAT
The configuration file is read as Perl code. Thus, comment lines
starting with C<#> and blank lines are ignored. The other lines are
typically assignments in the form (spaces are optional):
$variable = value ;
Usually the value is a C<"string"> enclosed in ASCII double-quote or
single-quote characters, per Perl syntax. The idea is to specify the
user-specific and journal-specific values needed for the Crossref
upload. The variables which are used are these:
$depositorName = "Depositor Name";
$depositorEmail = 'depositor@example.org';
$registrant = 'Registrant'; # organization name
$fullTitle = "FULL TITLE"; # journal name
$issn = "1234-5678"; # required
$abbrevTitle = "ABBR. TTL."; # optional
$coden = "CODEN"; # optional
For a given run, all C<.rpi> data read is assumed to belong to the
journal that is specified in the configuration file. More precisely, the
configuration data is written as a C<journal_metadata> element, with
given C<full_title>, C<issn>, etc., and then each C<.rpi> is written as
C<journal_issue> plus C<journal_article> elements.
The configuration file can also define one Perl function:
C<LaTeX_ToUnicode_convert_hook>. If it is defined, it is called at the
beginning of the procedure that converts LaTeX text to Unicode, which is
done with the L<LaTeX::ToUnicode> module, from the C<bibtexperllibs>
package (L<https://ctan.org/pkg/bibtexperllibs>). The function must
accept one string (the LaTeX text), and return one string (presumably
the transformed string). The standard conversions are then applied to
the returned string, so the configured function need only handle special
cases, such as control sequences particular to the journal at hand.
=head1 RPI FILE FORMAT
Here's the (relevant part of the) C<.rpi> file corresponding to the
C<rpsample.tex> example in the C<resphilosophica> package
(L<https://ctan.org/pkg/resphilosophica>):
%authors=Boris Veytsman\and A. U. Th{\o }r\and C. O. R\"espondent
%title=A Sample Paper:\\ \emph {A Template}
%year=2012
%volume=90
%issue=1--2
%startpage=1
%endpage=1
%doi=10.11612/resphil.A31245
%paperUrl=http://borisv.lk.net/paper12
%publicationType=full_text
Other lines, some not beginning with %, are ignored (and not shown).
For more details on processing, see the code.
The C<%paperUrl> value is what will be associated with the given C<%doi>
(output as the C<resource> element). Crossref strongly recommends that
the url be for a so-called landing page, and not directly for a pdf
(L<https://www.crossref.org/education/member-setup/creating-a-landing-page/>).
Special case: if the url is not specified,
and the journal is I<S<Res Philosophica>>,
a special-purpose search url using L<pdcnet.org> is returned.
Any other journal must always specify this.
The C<%authors> field is split at C<\and> (ignoring whitespace before
and after), and output as the C<contributors> element, using
C<sequence="first"> for the first listed, C<sequence="additional"> for
the remainder.
If the C<%publicationType> is not specified, it defaults to
C<full_text>, since that has historically been the case; C<full_text>
can also be given explicitly. The other values allowed by the Crossref
schema are C<abstract_only> and C<bibliographic_record>. Finally, if the
value is C<omit>, the C<publication_type> attribute is omitted entirely
from the given C<journal_article> element.
Each C<.rpi> must contain information for only one article, but multiple
files can be read in a single run. It would not be difficult to support
multiple articles in a single C<.rpi> file, but it makes debugging and
error correction easier when each uploaded XML contains a single
article.
=head2 MORE ABOUT AUTHOR NAMES
The three formats for names recognized are (not coincidentally) the same
as BibTeX:
First von Last
von Last, First
von Last, Jr., First
The forms can be freely intermixed within a single C<%authors> line,
separated with C<\and> (including the backslash). Commas as name
separators are not supported, unlike BibTeX.
In short, you may almost always use the first form; you shouldn't if
either there's a Jr part, or the Last part has multiple tokens but
there's no von part. See the C<btxdoc> (``BibTeXing'' by Oren Patashnik)
document for details.
In the C<%authors> line of a C<.rpi> file, some secondary directives are
recognized, indicated by C<|> characters. Easiest to explain with an
example:
%authors=|organization|\LaTeX\ Project Team \and Alex Brown|orcid=123
Thus: 1) if C<|organization|> is specified, the author name will be output
as an C<organization> contributor, instead of the usual C<person_name>,
as the Crossref schema requires.
2) If C<|orcid=I<value>|> is specified, the I<value> is output as an
C<ORCID> element for that C<person_name>.
These two directives, C<|organization>| and C<|orcid|> are mutually
exclusive, because that's how the Crossref schema defines them. The C<=>
sign after C<orcid> is required, while all spaces after the C<orcid>
keyword are ignored. Other than that, the ORCID value is output
literally. (E.g., the ORCID value of C<123> above is clearly invalid,
but it would be output anyway, with no warning.)
Extra C<|> characters, at the beginning or end of the entire C<%authors>
string, or doubled in the middle, are accepted and ignored. Whitespace
is ignored around all C<|> characters.
=head1 CITATIONS
Each C<.bbl> file corresponding to an input C<.rpi> file is read and
used to output a C<citation_list> element for that C<journal_article> in
the output XML. If no C<.bbl> file exists for a given C<.rpi>,
no C<citation_list> is output for that article.
The C<.bbl> processing is rudimentary: only so-called
C<unstructured_citation> references are produced for Crossref, that is,
the contents of the citation (each paragraph in the C<.bbl>) is dumped
as a single flat string without markup.
Bibliography text is unconditionally converted from TeX to XML, via the
method described above. It is not unusual for the conversion to be
incomplete or incorrect. It is up to you to check for this; e.g., if
any backslashes remain in the output, it is most likely an error.
Furthermore, it is assumed that the C<.bbl> file contains a sequence of
references, each starting with C<\bibitem{I<KEY>}> (which itself must be
at the beginning of a line, preceded only by whitespace), and the whole
bibliography ending with C<\end{thebibliography}> (similarly at the
beginning of a line). A bibliography not following this format will not
produce useful results. Bibliographies can be created by hand, or with
BibTeX, or any other method.
The C<key> attribute for the C<citation> element is taken as the I<KEY>
argument to the C<\bibitem> command. The sequential number of the
citation (1, 2, ...) is appended. The argument to C<\bibitem> can be
empty (C<\bibitem{}>, and the sequence number will be used on its own.
Although TeX will not handle empty C<\bibitem> keys, it can be
convenient when creating a C<.bbl> purely for Crossref.
The C<.rpi> file is also checked for the bibliography information, in
this same format.
Feature request: if anyone is interested in figuring out how to generate
structured citations
(L<https://data.crossref.org/reports/help/schema_doc/4.4.2/schema_4_4_2.html#citation>)
instead of these flat text dumps, that would be great.
=head1 EXAMPLES
ltx2crossrefxml.pl ../paper1/paper1.tex ../paper2/paper2.tex \
-o result.xml
ltx2crossrefxml.pl -c myconfig.cfg paper.tex -o paper.xml
=head1 AUTHOR
Boris Veytsman L<https://github.com/borisveytsman/crossrefware>
=head1 COPYRIGHT AND LICENSE
Copyright (C) 2012-2022 Boris Veytsman
This is free software. You may redistribute copies of it under the
terms of the GNU General Public License (any version)
L<https://www.gnu.org/licenses/gpl.html>. There is NO WARRANTY, to the
extent permitted by law.
=cut
use strict;
use warnings;
use Cwd;
use File::Basename;
use File::Spec;
BEGIN {
# find files relative to our installed location within TeX Live
chomp(my $TLMaster = `kpsewhich -var-value=TEXMFROOT`); # TL root
if (length($TLMaster)) {
unshift @INC, "$TLMaster/texmf-dist/scripts/bibtexperllibs";
}
# find development bibtexperllibs in sibling checkout to this script,
# even if $0 is a symlink. All irrelevant when using from an installation.
my $real0 = Cwd::abs_path($0);
my $scriptdir = File::Basename::dirname($real0);
my $dev_btxperllibs = Cwd::abs_path("$scriptdir/../bibtexperllibs");
# we need the lib/ subdirectories inside ...
unshift (@INC, glob ("$dev_btxperllibs/*/lib")) if -d $dev_btxperllibs;
}
use POSIX qw(strftime);
use BibTeX::Parser::Author;
use LaTeX::ToUnicode;
my $USAGE = <<END;
Usage: $0 [-c CONFIG] [-o OUTPUT] [--rpi-is-xml] LTXFILE...
Convert .rpi and (if any are present) .bbl files corresponding to each
LTXFILE to xml, for submitting to crossref.org. The LTXFILE is not read
(and need not even exist); any extension it has is replaced by .rpi and
.bbl.
The .rpi files are plain text, with values on lines beginning with %, as
output by (for example) the resphilosophica LaTeX package. The .bbl
files are as output by BibTeX. Both are also commonly created by hand.
The documentation for this script has examples.
The xml is written to standard output by default; the -o (--output)
option overrides this.
If the -c (--config) option is given, the given file is read before any
processing is done. This is used to define journal-specific defaults.
The usual --help and --version options are also supported.
For an example of using this script and associatd code, see the TUGboat
processing at
https://github.com/TeXUsersGroup/tugboat/tree/trunk/capsules/crossref.
Development sources, bug tracker: https://github.com/borisveytsman/crossrefware
Releases: https://ctan.org/pkg/crossrefware
END
my $VERSION = <<END;
ltx2crossrefxml (crossrefware) 2.52
This is free software: you are free to change and redistribute it, under
the terms of the GNU General Public License
http://www.gnu.org/licenses/gpl.html (any version).
There is NO WARRANTY, to the extent permitted by law.
Written by Boris Veytsman with many additions by Karl Berry
END
use Getopt::Long;
my %opts;
GetOptions(
"config|c=s" => \($opts{c}),
"output|o=s" => \($opts{o}),
"rpi-is-xml!"=> \($opts{xi}),
"version|V" => \($opts{V}),
"help|?" => \($opts{h})) || pod2usage(1);
if ($opts{h}) { print "$USAGE\n$VERSION"; exit 0; }
if ($opts{V}) { print $VERSION; exit 0; }
use utf8;
binmode(STDOUT, ":utf8");
################################################################
# Defaults and parameters
################################################################
*OUT=*STDOUT;
if (defined($opts{o})) {
open (OUT, ">$opts{o}") or die "open($opts{o}) for writing failed: $!\n";
binmode(OUT, ":utf8")
}
our $depositorName = 'DEPOSITOR_NAME';
our $depositorEmail = 'DEPOSITOR_EMAIL';
our $registrant = 'REGISTRANT';
our $fullTitle = "FULL TITLE";
our $abbrevTitle = "ABBR. TTL.";
our $issn = "0000-0000";
our $coden = "CODEN";
our $timestamp = strftime("%Y%m%d%H%M%S", gmtime);
# use timestamp in batchid, since the value is supposed to be unique
# for every submission to crossref by a given publisher.
# https://data.crossref.org/reports/help/schema_doc/4.4.2/schema_4_4_2.html#doi_batch_id
our $batchId="ltx2crossref-$timestamp-$$";
if ($opts{c}) {
if (-r $opts{c}) {
# if config arg is absolute, fine; if not, prepend "./" as slightly
# less troublesome than putting "." in the @INC path.
my $rel = (File::Spec->file_name_is_absolute($opts{c}) ? "" : "./");
require "$rel$opts{c}";
} else {
die "Cannot read config file $opts{c}. Goodbye.";
}
}
PrintHead();
#
# The hash %papers. Keys year->vol->issue->number
#
my %papers;
foreach my $file (@ARGV) {
AddPaper($file);
}
foreach my $year (keys %papers) {
foreach my $volume (keys %{$papers{$year}}) {
foreach my $issue (keys %{$papers{$year}->{$volume}}) {
PrintIssueHead($year, $volume, $issue);
my $paperList = $papers{$year}->{$volume}->{$issue};
#warn "papers for year=$year, volume=$volume, issue=$issue\n";
# Nice to have the issue.xml in some stable order, so sort
# by starting page. Doesn't matter if it's not perfect.
foreach my $paper (sort { $a->{startpage} cmp $b->{startpage} }
@{$paperList}) {
PrintPaper($paper);
}
}
}
}
PrintTail();
exit(0);
#####################################################
# Printing the head and the tail
#####################################################
sub PrintHead {
# do not output the <coden> or <abbrev_title> if the journal doesn't
# have them.
my $indent = " ";
my $coden_out = $coden ne "CODEN" ? "\n$indent<coden>$coden</coden>" : "";
my $abbrev_title_out = $abbrevTitle ne "ABBR. TTL."
? "\n$indent<abbrev_title>$abbrevTitle</abbrev_title>"
: "";
# as of schema version 4.3.4, crossref renamed the <name> element
# inside <depositor> to <depositor_name>. Sigh. Something to take
# into account with older schemas.
# https://www.crossref.org/education/content-registration/crossrefs-metadata-deposit-schema/schema-versions/
print OUT <<END;
<doi_batch xmlns="http://www.crossref.org/schema/4.4.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="4.4.2" xsi:schemaLocation="http://www.crossref.org/schema/4.4.2 http://www.crossref.org/schema/deposit/crossref4.4.2.xsd">
<head>
<doi_batch_id>$batchId</doi_batch_id>
<timestamp>$timestamp</timestamp>
<depositor>
<depositor_name>$depositorName</depositor_name>
<email_address>$depositorEmail</email_address>
</depositor>
<registrant>$registrant</registrant>
</head>
<body><journal>
<journal_metadata language="en">
<full_title>$fullTitle</full_title>$abbrev_title_out
<issn>$issn</issn>$coden_out
</journal_metadata>
END
}
sub PrintTail {
print OUT <<END;
</journal></body>
</doi_batch>
END
return;
}
#######################################################
# Adding one paper from $file.rpi and .bbl to global %papers.
#######################################################
sub AddPaper {
my $file = shift;
my ($name,$path,$suffix) = fileparse($file, '\.[^\.]*$');
my $rpifile = File::Spec->catfile($path, "$name.rpi");
open (RPI, $rpifile)
or die "open($rpifile) failed: $! (did you process $file?)\n";
my %data;
#warn "reading rpi file: $rpifile\n";
while (<RPI>) {
chomp;
if (/^%([^=]*)\s*=\s*(.*)\s*$/) {
if (exists $data{$1}) {
warn "$rpifile:$.: already saw data{$1}=$data{$1};"
. " an .rpi file should have data for only one article,"
. " but overwriting with `$2' anyway.\n";
}
$data{$1} = $2;
}
}
close RPI;
# look for bibliographies in both the .rpi and any .bbl file.
my @bibliography;
foreach my $bibfile ($file, File::Spec->catfile($path, "$name.bbl")) {
@bibliography = (@bibliography, AddBibliography($bibfile));
}
$data{'bibliography'} = \@bibliography;
# Die if the fields we use unconditionally are empty. Not all of
# them are required by the schema, but we can wait to generalize.
foreach my $field (qw(title year volume issue startpage endpage doi
paperUrl)) {
if (! $data{$field}) {
die ("$0: field must not be empty: $field\n "
. &debug_hash_as_string("whole hash", %data));
}
}
#warn &debug_hash_as_string("new issue $data{volume}:$data{issue}", %data);
push @{$papers{$data{year}}->{$data{volume}}->{$data{issue}}}, \%data;
}
##############################################################
# Reading a list of papers from BIBFILE and adding it to the
# bibliography. Each item is assumed to start with
# \bibitem{KEY} and the whole bib to end with \end{thebibliography}.
#
# We return a list of hashes, each hash with a single key, the citation
# key, and its value a flat string of the entry.
#
# No conversion of the text is done here.
##############################################################
sub AddBibliography {
my $bibfile = shift;
open (BIB, $bibfile) or return;
my $insidebibliography = 0;
my $currpaper = ""; # that is, the current bib entry
my $bibno = 0;
my @result;
my $key;
while (<BIB>) {
chomp;
next if /^\s*%/; # TeX comment line
s/[ \t]%.*//; # remove TeX comment
#
# allow empty \bibitem key for the sake of handwritten bbls.
# Similarly, might be more stuff on the line when handwritten.
if (s/^\s*\\bibitem(?:\[.*?\])?+\s*\{(.*?)\}//) {
my $newkey = $1;
if ($insidebibliography) {
if ($currpaper) {
# Append the current sequence number for this citation,
# since that's what Crossref recommends (sort of).
# For prettiness, if the key is otherwise empty,
# don't include a dash beforehand.
$bibno++;
$key .= ($key ? "-" : "") . $bibno;
#
my %paperhash;
$paperhash{$key} = $currpaper;
push @result, \%paperhash;
}
}
# The citation key (required by schema) starts as the bibitem key.
$key = $newkey;
$currpaper = $_;
$insidebibliography = 1;
next;
}
if (/^\s*\\end\{thebibliography\}/) {
if ($currpaper) {
$bibno++;
$key .= ($key ? "-" : "") . $bibno;
#
my %paperhash;
$paperhash{$key} = $currpaper;
push @result, \%paperhash;
}
$currpaper = "";
$insidebibliography = 0;
next;
}
if ($insidebibliography) {
$currpaper .= " $_";
}
}
close BIB;
# We look in the .rpi files too, which will generally have none.
if (@result == 0 && $bibfile =~ /\.bbl$/) {
warn "$0: *** no \\bibitems found in: $bibfile\n";
} elsif ($insidebibliography) {
warn "$0: *** no \\end{thebibliography} found in: $bibfile\n";
warn "$0: so the last bib entry is missing!\n";
}
return @result;
}
#################################################################
# Printing information about one issue
#################################################################
sub PrintIssueHead {
my ($year, $volume, $issue) = @_;
print OUT <<END;
<journal_issue>
<publication_date media_type="print">
<year>$year</year>
</publication_date>
<journal_volume><volume>$volume</volume></journal_volume>
<issue>$issue</issue>
</journal_issue>
END
}
###############################################################
# Printing information about one paper
###############################################################
sub PrintPaper {
my $paper = shift;
#warn (&debug_hash_as_string ("doing paper", $paper));
my $title = SanitizeText($paper->{title});
my $url = GetURL($paper);
my $publication_type = GetPublicationType($paper->{publicationType});
&TitleCheck($title);
print OUT <<END;
<journal_article$publication_type>
<titles>
<title>$title</title>
</titles>
<contributors>
END
my @authors = split /\s*\\and\s*/, $paper->{authors};
my $seq = 'first';
foreach my $author (@authors) {
PrintAuthor($author, $seq);
$seq = 'additional';
}
print OUT <<END;
</contributors>
<publication_date media_type="print">
<year>$paper->{year}</year>
</publication_date>
<pages>
<first_page>$paper->{startpage}</first_page>
<last_page>$paper->{endpage}</last_page>
</pages>
<doi_data>
<doi>$paper->{doi}</doi>
<timestamp>$timestamp</timestamp>
<resource>$url</resource>
</doi_data>
END
if (scalar(@{$paper->{bibliography}})) {
print OUT <<END;
<citation_list>
END
foreach my $citation (@{$paper->{bibliography}}) {
PrintCitation($citation);
}
print OUT <<END;
</citation_list>
END
}
print OUT <<END;
</journal_article>
END
}
###############################################################
# Crossref <title> strings can contain a few so-called "face" HTML
# commands. Complain if they have anything anything else.
# schema doc: https://data.crossref.org/reports/help/schema_doc/4.4.2/schema_4_4_2.html#title
# face doc: https://www.crossref.org/education/content-registration/crossrefs-metadata-deposit-schema/face-markup/
# mathml doc: https://www.crossref.org/education/content-registration/crossrefs-metadata-deposit-schema/including-mathml-in-deposits/
#
# We don't technically validate the string, e.g., mismatched tags will
# go unnoticed here. The real validator at Crossref will catch whatever.
###############################################################
sub TitleCheck {
my $title = shift;
my $orig_title = $title;
foreach my $tag (qw(b em i ovl scp strong sub sup tt u)) {
$title =~ s,<\s*/?$tag\s*>,,g; # eradicate <tag> and </tag>
}
# <font> can (maybe?) take lots of extra attributes:
$title =~ s,<\s*/?font.*?>,,g;
# MathML is too complex; just wipe it all out. If there are
# problems, the real validator at Crossref will complain.
$title =~ s,<\s*mml:math.*/mml:math\s*>,,g;
# No tags should remain.
if ($title =~ /</) {
die "$0: invalid tags remaining in: $title (original: $orig_title)\n";
}
}
###############################################################
# Simplistic TeX-to-html
# (no-op for rpi text if --input-is-xml was given).
###############################################################
sub SanitizeText {
my $string = shift;
return $string if $opts{xi}; # do nothing if --rpi-is-xml
return SanitizeTextAlways($string);
}
# Split into two functions so we can sanitize bbl but not rpi.
sub SanitizeTextAlways {
my $string = shift;
# pass user hook subroutine if defined.
my @hook = (defined(&{"LaTeX_ToUnicode_convert_hook"}))
? ("hook" => \&LaTeX_ToUnicode_convert_hook)
: ();
# conversion of accented control sequences to characters, etc.
# Let's use &#uuuu; entities instead of literal UTF-8; Crossref
# recommends it, and it's easier for postprocessing.
$string = LaTeX::ToUnicode::convert($string, entities => 1, @hook);
return $string;
}
################################################################
# Printing one author in arg ORIG_AUTHOR, in sequence SEQ.
################################################################
sub PrintAuthor {
my ($orig_author,$seq) = @_;
# recognize extra directives, either |organization|
# or |orcid=<value>|.
my $organization = 0;
my $orcid = 0;
my $author = "";
my @name_parts = split (/\|/, $orig_author);
foreach my $np (@name_parts) {
$np =~ s/^\s*(.*)\s*$/$1/s; # remove leading and trailing whitespace
if ($np eq "organization") {
$organization = 1;
} elsif ($np =~ /^orcid/) {
($orcid = $np) =~ s/^orcid\s*=//;
$orcid =~ s/\s//g; # remove all whitespace from value
if (! $orcid) {
warn "$0: ignoring empty orcid specified in: $orig_author\n";
}
} elsif (! $np) {
# silently ignore empty part, as in ||
} else {
if ($author) {
die ("$0: already saw author name `$author', should not"
. " have second: $np\n");
}
$author = $np;
}
}
if ($organization && $orcid) {
die ("$0: orcid and organization cannot both be present in:"
. " $orig_author\n");
}
# for both author types, organization and person, we have to output
# the sequence number and the contributor role, which we assume to
# be author.
my $author_elts = qq!sequence="$seq" contributor_role="author"!;
# for organizations, nothing to do but output it.
if ($organization) {
my $line = SanitizeText($author);
print OUT <<END;
<organization $author_elts>$line</organization>
END
return;
}
# what's left is the common case of a person, not an organization.
print OUT <<END;
<person_name $author_elts>
END
# must split the person's name.
my $person=new BibTeX::Parser::Author ($author);
#warn (debug_list_as_string ($author, $person));
if ($person->first) {
my $line = $person->first;
$line = SanitizeText($line);
print OUT <<END;
<given_name>$line</given_name>
END
}
if ($person->last) {
my $line = SanitizeText($person->last);
if ($person->von) {
$line = SanitizeText($person->von)." $line";
}
print OUT <<END;
<surname>$line</surname>
END
}
if ($person->jr) {
my $line = SanitizeText($person->jr);
print OUT <<END;
<suffix>$line</suffix>
END
}
if ($orcid) {
print OUT <<END;
<ORCID>https://orcid.org/$orcid</ORCID>
END
}
print OUT <<END;
</person_name>
END
}
#############################################################
# Printing citations
#############################################################
sub PrintCitation {
my $paperhash=shift;
foreach my $key (keys (%{$paperhash})) {
my $citation = $paperhash->{$key};
$citation = SanitizeTextAlways($citation);
print OUT <<END;
<citation key="$key"><unstructured_citation>
$citation
</unstructured_citation></citation>
END
}
}
##############################################################
# Return publication_type attribute for <journal_article>, given $PUBTYPE.
# https://data.crossref.org/reports/help/schema_doc/4.4.2/schema_4_4_2.html#publication_type.atts
#
# If not specified in input, return " publication_type=full_text" since
# it was hardwired that way before. If set to "omit", return empty
# string. Else return " publication_type=$PUBTYPE>, if the value
# is valid. If not, die. (Leading space is so result can be directly used.)
##############################################################
sub GetPublicationType {
my $pubtype = shift;
my $ret;
if (! $pubtype) {
$ret = "full_text";
} elsif ($pubtype eq "omit") {
$ret = "";
} elsif ($pubtype =~ /^(abstract_only|full_text|bibliographic_record)$/) {
$ret = $pubtype;
} else {
die "$0: invalid publication_type: $pubtype\n";
}
$ret = " publication_type=\"$ret\"" if $ret;
return $ret;
}
##############################################################
# Calculating URL. Res Philosophica gets special treatment.
##############################################################
sub GetURL {
my $paper = shift;
my $result;
if ($paper->{paperUrl}) {
$result = $paper->{paperUrl}
} elsif ($paper->{doi} =~ m,^10\.11612/resphil,) {
my $doi = $paper->{doi};
$result = 'http://www.pdcnet.org/oom/service?url_ver=Z39.88-2004&rft_val_fmt=&rft.imuse_synonym=resphilosophica&rft.DOI='.$doi.'&svc_id=info:www.pdcnet.org/collection';
} else {
die ("$0: paperUrl field is required\n "
. &debug_hash_as_string("whole hash", $paper));
}
$result =~ s/&/&/g; # amp(ersand)
return $result;
}
##############################################################
# debug_hash_as_string($LABEL, HASH)
#
# Return LABEL followed by HASH elements, followed by a newline, as a
# single string. If HASH is a reference, it is followed (but no recursive
# derefencing).
###############################################################
sub debug_hash_as_string {
my ($label) = shift;
my (%hash) = (ref $_[0] && $_[0] =~ /.*HASH.*/) ? %{$_[0]} : @_;
my $str = "$label: {";
my @items = ();
for my $key (sort keys %hash) {
my $val = $hash{$key};
$val = ".undef" if ! defined $val;
$key =~ s/\n/\\n/g;
$val =~ s/\n/\\n/g;
push (@items, "$key:$val");
}
$str .= join (",", @items);
$str .= "}";
return "$str\n";
}
##############################################################
# debug_list_as_string($LABEL, LIST)
#
# Same but for lists.
##############################################################
sub debug_list_as_string {
my ($label) = shift;
my (@list) = (ref $_[0] && $_[0] =~ /.*ARRAY.*/) ? @{$_[0]} : @_;
my $str = "$label [" . join (",", @list) . "]";
return "$str\n";
}
|