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--
-- Copyright (c) 2021-2024 Zeping Lee
-- Released under the MIT license.
-- Repository: https://github.com/zepinglee/citeproc-lua
--
local core = {}
require("lualibs")
local json_decode = utilities.json.tolua
local citeproc = require("citeproc")
local bibtex_data = require("citeproc-bibtex-data")
local bibtex_parser = require("citeproc-bibtex-parser")
local latex_parser = require("citeproc-latex-parser")
local yaml -- = require("citeproc-yaml") -- load on demand
local bibtex2csl -- = require("citeproc-bibtex2csl") -- load on demand
local unicode = require("citeproc-unicode")
local util = citeproc.util
core.locale_file_format = "csl-locales-%s.xml"
core.uncited_ids = {}
core.uncite_all_items = false
core.item_list = {}
core.item_dict = {}
---@param file_name string
---@param ftype "bib"?
---@param file_info string
---@return string? contents
function core.read_file(file_name, ftype, file_info)
if file_info then
file_info = unicode.capitalize(file_info)
else
file_info = "File"
end
local path = kpse.find_file(file_name, ftype)
if not path then
if ftype and not util.endswith(file_name, ftype) then
file_name = file_name .. ftype
end
util.error(string.format('%s "%s" not found', file_info, file_name))
return nil
end
local file = io.open(path, "r")
if not file then
util.error(string.format('Cannot open %s "%s"', file_info, path))
return nil
end
local contents = file:read("*a")
contents = util.remove_bom(contents)
file:close()
return contents
end
---@param filename string
---@return string file
---@return string format
---@return string? contents
local function read_data_file(filename)
local file = filename
local format = "json"
local contents = nil
if util.endswith(filename, ".json") then
format = "json"
contents = core.read_file(filename, nil, "database file")
elseif string.match(filename, "%.ya?ml$") then
format = "yaml"
contents = core.read_file(filename, nil, "database file")
elseif util.endswith(filename, ".bib") then
format = "bibtex"
contents = core.read_file(filename, "bib", "database file")
else
file = filename .. ".json"
local path = kpse.find_file(file)
if path then
format = "json"
contents = core.read_file(file, nil, "database file")
else
path = kpse.find_file(filename .. ".yaml") or kpse.find_file(filename .. ".yml")
if path then
format = "yaml"
file = filename .. string.match(path, "%.ya?ml$")
contents = core.read_file(path, nil, "database file")
else
path = kpse.find_file(filename, "bib")
if path then
file = filename .. ".bib"
format = "bibtex"
contents = core.read_file(filename, "bib", "database file")
else
util.error(string.format('Cannot find database file "%s"', filename .. ".json"))
return file, format, nil
end
end
end
end
return file, format, contents
end
local function read_data_files(data_files)
local item_list = {}
local item_dict = {}
--- Store BibTeX entries for later resolving crossref
---@type table<string, BibtexEntry>
local bibtex_entries = {}
---@type table<string, string>
local bibtex_strings = {}
for name, macro in pairs(bibtex_data.macros) do
bibtex_strings[name] = macro.value
end
---@type BibtexEntry[]
local entries_with_crossref = {}
for _, data_file in ipairs(data_files) do
-- local file_name, csl_items = read_data_file(data_file)
local csl_items = {}
local file, format, contents = read_data_file(data_file)
if contents then
if format == "json" then
local ok, res = pcall(json_decode, contents)
if ok and res then
---@cast res CslData
csl_items = res
else
util.error(string.format('JSON decode error in file "%s".', file))
end
elseif format == "yaml" then
yaml = yaml or require("citeproc-yaml")
local ok, res = pcall(yaml.parse, contents)
if ok and res then
---@cast res CslData
csl_items = res
else
util.error(string.format('YAML decode error in file "%s".', file))
end
elseif format == "bibtex" then
local bib_data, exceptions = bibtex_parser.parse(contents, bibtex_strings)
if bib_data then
bibtex2csl = bibtex2csl or require("citeproc-bibtex2csl")
csl_items = bibtex2csl.convert_to_csl_data(bib_data, true, true, true, true)
for _, entry in ipairs(bib_data.entries) do
if not bibtex_entries[entry.key] then
bibtex_entries[entry.key] = entry
if entry.fields.crossref then
table.insert(entries_with_crossref, entry)
end
end
end
for string_name, value in pairs(bib_data.strings) do
bibtex_strings[string_name] = value
end
end
end
for _, item in ipairs(csl_items) do
local id = item.id
if item_dict[id] then
util.warning(string.format('Duplicate entry key "%s" in "%s".', id, file))
else
item_dict[id] = item
table.insert(item_list, item)
end
end
end
end
bibtex_parser.resolve_crossrefs(entries_with_crossref, bibtex_entries)
for _, entry in ipairs(entries_with_crossref) do
local new_item = bibtex2csl.convert_to_csl_item(entry, true, true, true, true)
item_dict[new_item.id] = new_item
for i, item in ipairs(item_list) do
if item.id == new_item.id then
item_list[i] = new_item
break
end
end
end
return item_list, item_dict
end
function core.make_citeproc_sys(data_files)
core.item_list, core.item_dict = read_data_files(data_files)
local citeproc_sys = {
retrieveLocale = function (lang)
local locale_file_format = core.locale_file_format or "locales-%s.xml"
local filename = string.format(locale_file_format, lang)
return core.read_file(filename)
end,
retrieveItem = function (id)
local res = core.item_dict[id]
return res
end
}
return citeproc_sys
end
---comment
---@param style_name string
---@param data_files string[]
---@param lang string?
---@return CiteProc?
function core.init(style_name, data_files, lang)
if style_name == "" or #data_files == 0 then
return nil
end
local style = core.read_file(style_name .. ".csl", nil, "style")
if not style then
util.error(string.format('Failed to load style "%s.csl"', style_name))
return nil
end
local force_lang = nil
if lang and lang ~= "" then
force_lang = true
else
lang = nil
end
local citeproc_sys = core.make_citeproc_sys(data_files)
local engine = citeproc.new(citeproc_sys, style, lang, force_lang)
if engine:is_dependent_style() then
local default_locale = engine.style.default_locale;
local parent_style_link = engine:get_independent_parent()
if not parent_style_link then
return nil
end
local parent_style_id = string.match(string.gsub(parent_style_link, "/+$", ""), "[^/]+$")
util.info(string.format('Style "%s" is a dependent style linked to "%s".', style_name, parent_style_id))
style = core.read_file(parent_style_id .. ".csl", nil, "style")
if not style then
util.error(string.format('Failed to load style "%s.csl"', parent_style_id))
return nil
end
engine = citeproc.new(citeproc_sys, style, lang, force_lang)
engine.style.default_locale = default_locale
end
return engine
end
local function parse_latex_seq(s)
local t = {}
for item in string.gmatch(s, "(%b{})") do
item = string.sub(item, 2, -2)
table.insert(t, item)
end
return t
end
local function parse_latex_prop(s)
local t = {}
for key, value in string.gmatch(s, "([%w%-]+)%s*=%s*(%b{})") do
value = string.sub(value, 2, -2)
if value == "true" then
value = true
elseif value == "false" then
value = false
end
t[key] = value
end
return t
end
function core.make_citation(citation_info)
-- `citation_info`: "citationID={ITEM-1@2},citationItems={{id={ITEM-1},label={page},locator={6}}},properties={noteIndex={3}}"
-- util.debug(citation_info)
local citation = parse_latex_prop(citation_info)
-- assert(citation.citationID)
-- assert(citation.citationItems)
-- assert(citation.properties)
citation.citationItems = parse_latex_seq(citation.citationItems)
for i, item in ipairs(citation.citationItems) do
local citation_item = parse_latex_prop(item)
if citation_item.prefix then
-- util.debug(citation_item.prefix)
citation_item.prefix = latex_parser.latex_to_pseudo_html(citation_item.prefix, true, false)
-- util.debug(citation_item.prefix)
end
if citation_item.suffix then
citation_item.suffix = latex_parser.latex_to_pseudo_html(citation_item.suffix, true, false)
end
citation.citationItems[i] = citation_item
end
citation.properties = parse_latex_prop(citation.properties)
local note_index = citation.properties.noteIndex
if not note_index or note_index == "" then
citation.properties.noteIndex = 0
elseif type(note_index) == "string" and string.match(note_index, "^%d+$") then
citation.properties.noteIndex = tonumber(note_index)
else
util.error(string.format('Invalid note index "%s".', note_index))
end
-- util.debug(citation)
return citation
end
function core.process_citations(engine, citations)
local citations_pre = {}
local citation_strings = {}
core.update_cited_and_uncited_ids(engine, citations)
for _, citation in ipairs(citations) do
if citation.citationID ~= "@nocite" then
-- local res = engine:processCitationCluster(citation, citations_pre, {})
-- for _, tuple in ipairs(res[2]) do
-- local citation_str = tuple[2]
-- local citation_id = tuple[3]
-- citation_strings[citation_id] = citation_str
-- util.debug(citation_str)
-- end
local citation_str = engine:process_citation(citation)
citation_strings[citation.citationID] = citation_str
table.insert(citations_pre, {citation.citationID, citation.properties.noteIndex})
end
end
return citation_strings
end
function core.update_cited_and_uncited_ids(engine, citations)
local id_list = {}
local id_map = {} -- Boolean map for checking if id in list
local uncited_id_list = {}
local uncited_id_map = {}
for _, citation in ipairs(citations) do
if citation.citationID == "@nocite" then
for _, cite_item in ipairs(citation.citationItems) do
if cite_item.id == "*" then
if not core.uncite_all_items then
for _, item in ipairs(core.item_list) do
if not uncited_id_map[item.id] then
table.insert(uncited_id_list, item.id)
uncited_id_map[item.id] = true
end
end
core.uncite_all_items = true
end
elseif not uncited_id_map[cite_item.id] then
table.insert(uncited_id_list, cite_item.id)
uncited_id_map[cite_item.id] = true
end
end
else -- Real citation
for _, cite_item in ipairs(citation.citationItems) do
if not id_map[cite_item.id] then
table.insert(id_list, cite_item.id)
id_map[cite_item.id] = true
end
end
end
end
engine:updateItems(id_list)
engine:updateUncitedItems(uncited_id_list)
end
---Convert to a filter object described in
--- <https://citeproc-js.readthedocs.io/en/latest/running.html#selective-output-with-makebibliography>
---@param filter_str string e.g., "type={book},notcategory={csl},notcategory={tex}"
---@return table
function core.parser_filter(filter_str)
local conditions = {}
for i, condition in ipairs(latex_parser.parse_seq(filter_str)) do
local negative
local field, value = string.match(condition, "(%w+)%s*=%s*{([^}]+)}")
if field then
if string.match(field, "^not") then
negative = true
field = string.gsub(field, "^not", "")
end
if field == "category" then
field = "categories"
end
if field == "keyword" or field == "type" or field == "categories" then
table.insert(conditions, {
field = field,
value = value,
negative = negative,
})
end
end
end
-- util.debug(conditions)
return {select = conditions}
end
---comment
---@param engine CiteProc
---@param option_str string
---@return unknown
function core.make_bibliography(engine, option_str)
local filter
local options = {}
if option_str and option_str ~= "" then
options = latex_parser.parse_prop(option_str)
filter = core.parser_filter(option_str)
end
local result = engine:makeBibliography(filter)
local params = result[1]
local bib_items = result[2]
local res = ""
---@type table<string, any>
local bib_options = {
index = options.index or "1"
}
local bib_option_map = {
["hanging-indent"] = "hangingindent",
["entry-spacing"] = "entryspacing",
["line-spacing"] = "linespacing",
["widest-label"] = "widest_label",
}
local bib_option_order = {
"index",
"hanging-indent",
"line-spacing",
"entry-spacing",
"widest-label",
}
for option, param in pairs(bib_option_map) do
if params[param] then
bib_options[option] = params[param]
end
end
local bib_option_list = {}
for _, option in ipairs(bib_option_order) do
local value = bib_options[option]
if value and value ~= "" then
table.insert(bib_option_list, string.format("%s = %s", option, tostring(value)))
end
end
local bib_options_str = table.concat(bib_option_list, ", ")
-- util.debug(params.bibstart)
-- if params.bibstart then
-- res = res .. params.bibstart
-- end
local bibstart = string.format("\\begin{thebibliography}{%s}\n", bib_options_str)
res = res .. bibstart
for _, bib_item in ipairs(bib_items) do
res = res .. "\n" .. bib_item
end
if params.bibend then
res = res .. "\n" .. params.bibend
end
return res
end
function core.set_categories(engine, categories_str)
-- util.debug(categories_str)
local category_dict = latex_parser.parse_prop(categories_str)
for category, keys in pairs(category_dict) do
category_dict[category] = latex_parser.parse_seq(keys)
end
for category, keys in pairs(category_dict) do
for _, key in ipairs(keys) do
local item = engine.registry.registry[key]
if item then
if not item.categories then
item.categories = {}
end
if not util.in_list(category, item.categories) then
table.insert(item.categories, category)
end
else
util.error(string.format("Invalid citation key '%s'.", key))
end
end
end
-- for id, item in pairs(csl.engine.registry.registry) do
-- util.debug(id)
-- util.debug(item.categories)
-- end
end
return core
|