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+% This example file for NIH biographical sketches was originally written
+% by Bruce Donald (http://www.cs.duke.edu/brd/).
+%
+% You may freely use, modify and/or distribute this file.
+%
+\documentclass[11pt]{nih}
+%\documentclass[12pt]{nih-times}
+% last revision:
+\def\mydate{2006-09-16 17:10:33 karl}
+%\usepackage[dvips]{graphicx}
+%\usepackage{psfrag}
+\usepackage{color}
+%\usepackage{boxedminipage}
+\usepackage{amsfonts}
+\usepackage{denselists}
+
+\long\def\gobble#1{}
+
+\long\def\MEMS#1{}
+
+%Note from brd
+\long\def\todo#1{}
+\def\ICRA{IEEE International Conference on Robotics and Automation (ICRA)}
+
+\def\cbk#1{[{\em #1}]}
+
+\def\degree{$^\circ$}
+\def\R{\mathbb{R}}
+\def\Fscr{\mathcal{F}}
+\def\set#1{{\{#1\}}}
+\def\edge{\!\rightarrow\!}
+\def\dedge{\!\leftrightarrow\!}
+
+\def\Jigsaw{{\sc Jigsaw}}
+\def\ahelix{\ensuremath{\alpha}-helix}
+\def\ahelices{\ensuremath{\alpha}-helices}
+\def\ahelical{$\alpha$-helical}
+\def\bstrand{\ensuremath{\beta}-strand}
+\def\bstrands{\ensuremath{\beta}-strands}
+\def\bsheet{\ensuremath{\beta}-sheet}
+\def\bsheets{\ensuremath{\beta}-sheets}
+\def\hone{\ensuremath{^1}\rm{H}}
+\def\htwo{$^{2}$H}
+\def\cthir{\ensuremath{^{13}}\rm{C}}
+\def\nfif{\ensuremath{^{15}}\rm{N}}
+\def\hn{\rm{H}\ensuremath{^\mathrm{N}}}
+\def\hnone{\textup{H}\ensuremath{^1_\mathrm{N}}}
+\def\ca{\rm{C}\ensuremath{^\alpha}}
+\def\catwel{\ensuremath{^{12}}\rm{C}\ensuremath{^\alpha}}
+\def\ha{\rm{H}\ensuremath{^\alpha}}
+\def\cb{\rm{C}\ensuremath{^\beta}}
+\def\hb{\rm{H}\ensuremath{^\beta}}
+\def\hg{\rm{H}\ensuremath{^\gamma}}
+\def\dnn{\ensuremath{d_{\mathrm{NN}}}}
+\def\dan{\ensuremath{d_{\alpha \mathrm{N}}}}
+\def\jconst{\ensuremath{^{3}J_{\mathrm{H}^{\mathrm{N}}\mathrm{H}^{\alpha}}}}
+
+\def\cbfb{CBF-$\beta$}
+
+\newtheorem{defn}{Definition}
+\newtheorem{claim}{Claim}
+
+\newenvironment{closeenumerate}{\begin{list}{\arabic{enumi}.}{\topsep=0in\itemsep=0in\parsep=0in\usecounter{enumi}}}{\end{list}}
+\def\CR{\hspace{0pt}} % ``invisible'' space for line break
+
+%\long\def\efforta mount#1{#1}
+\long\def\effortamount#1{}
+
+\begin{document}
+
+%\setcounter{page}{20} % or whatever
+\setcounter{page}{7} % or whatever
+
+%\newsec{Biographical Sketch: Bruce Randall Donald}
+\def\vp{\vphantom{\Large{O}}}
+\def\Vp{\vphantom{\LARGE{O}}}
+
+
+\subsubsection*{Biographical Sketch}
+
+%\gobble{
+
+\begin{tabular}{|l|l|}
+\hline
+\Vp{\sf Name} & {\sf Position Title}\\
+\hline
+\Vp \ \ {\bf Bruce R.~Donald, Ph.D.} & \
+ {\bf Professor of Computer Science and Biochemistry}\\
+\gobble{{\bf William and Sue Gross Professor }\\
+ & \ \ \ \ \ \ {\bf of Computer Science and Biochemistry (as of 8/1/2006)}\\}
+\hline
+\end{tabular}
+
+%}
+
+\subsubsection*{Education/Training}
+
+\begin{tabular}{|l|c|c|l|}
+\hline
+\Vp{\sf INSTITUTION} & {\sf DEGREE} &
+ {\sf YEAR} & {\sf FIELD OF STUDY}\\
+\hline
+\hline
+\Vp Yale University & B.A. & 1980 & \\
+\hline
+\Vp Massachusetts Institute of Technology & S.M.& 1984 & Electrical Engineering \& Computer Science\\
+\hline
+\Vp Massachusetts Institute of Technology & Ph.D. &1987&
+Computer Science\\
+\hline
+\end{tabular}
+
+\bigskip
+
+\gobble{
+\noindent
+\begin{Description}
+\item[]
+Ph.D.~Advisor: Tom\'as Lozano-P\'erez, MIT Artificial Intelligence
+Laboratory and Department of Electrical Engineering \& Computer Science.
+\end{Description}
+}
+
+\subsubsection*{A. Research and Professional Experience}
+
+\underline{Professional Experience}
+
+\def\myitem{\ $\bullet$\ }
+
+ %\def\parens#1{({#1})}
+\def\parens#1{{#1}:}
+
+%\begin{Description}
+{\myitem} \parens{1978-84} Research Analyst,
+Laboratory for Computer Graphics and Spatial
+Analysis, GSD, Harvard University.
+{\myitem} \parens{1984} Research Staff, Artificial Intelligence Laboratory, MIT.
+{\myitem} \parens{1982-1987} Graduate student, Artificial Intelligence Laboratory and Department of EECS, MIT.
+{\myitem} \parens{1987-1993} Assistant Professor;
+\parens{1993-1998} Associate Professor (with tenure), Computer Science Department, Cornell University.
+{\myitem} \parens{1995-1996} Consultant and Contractor, Interval Research Corporation, Palo Alto, CA.
+{\myitem} \parens{1994-1996} Visiting Professor, Computer Science Department,
+Stanford.
+{\myitem} \parens{1997-1999} Associate Professor (with tenure);
+ \parens{1999-2006} Professor of Computer Science,
+ Dartmouth College.
+\gobble{{\myitem} \parens{1998} Founder, M.D.-Ph.D.~Program in Computational Biology, Dartmouth College and
+Dartmouth Medical School.}
+{\myitem} \parens{1999-2006} M.D.-Ph.D.~Committee, Dartmouth College and
+Dartmouth Medical School.
+{\myitem} \parens{2000} Conference chair, Int'l.~Workshop on Algorithmic
+Foundations of Robotics.
+{\myitem} 11 NSF Advisory Panels (1990-2003).
+{\myitem} \parens{2000-2001} Visiting Scientist, Artificial Intelligence Laboratory and Department of EECS, MIT.
+{\myitem} \parens{2000-2002} Scientific Advisory Board, Carta
+Proteomics, Inc. (now ExSAR).
+{\myitem} \parens{2000-2006} Member, Dartmouth Center for Structural
+Biology and Computational Chemistry.
+{\myitem} \parens{2000-2006} Adjunct Professor of Chemistry, Dartmouth.
+{\myitem} \parens{2002-2006} Adjunct Professor of Biological Sciences, Dartmouth.
+{\myitem} \parens{2002, 2004, 2005} {\em Ad hoc} Member, NIH Study Sections (BBCA,
+ ALY, ZRG1 CFS).
+{\myitem} \parens{2003--2006} Joan and Edward Foley Professor, Dartmouth.
+{\myitem}\parens{2006--now} William and Sue Gross Professor of Computer
+Science, Duke University.
+{\myitem}\parens{2006--now}
+Professor of Biochemistry, School of Medicine, Duke University Medical Center.
+
+%\end{Description}
+
+\noindent\underline{Honors and Awards}
+
+%\begin{Description}
+
+{\myitem} \parens{1979} Phi Beta Kappa; \parens{1980} Distinction in the Major, Yale University.
+{\myitem} \parens{1980} Graduated {\em Summa Cum Laude,} Yale.
+{\myitem} \parens{1985-1987} NASA/JPL Graduate Student Researcher Fellowship.
+{\myitem} \parens{1989-1994} NSF Presidential Young Investigator.
+{\myitem} \parens{1997-2000} NSF Challenges in Computer and Information Science and Engineering Grant.
+{\myitem} \parens{2001} Guggenheim Fellow, {\em
+``Algorithms in Structural Proteomics."}
+{\myitem} \parens{2002} Distinguished Lectures, Robert Mueller-Thuns
+(Univ.~Illinois, Urbana-Champaign); Triangle (UNC Chapel Hill, Duke
+\& N.C.~State).
+
+%\end{Description}
+
+\def\mystar{{$\star$}}
+
+%\subsubsection*{Selected Peer-reviewed Publications (from a list of
+%159 total, with 28 in 2003-4). }
+
+\medskip
+
+\noindent{\bf B. Selected Peer-reviewed Publications (from a list of
+176 total, with 19 in 2005--6)}\gobble{\\ {\sf Publications available online at
+ {\tt
+ www.cs.dartmouth.edu/brd/Research/Bio/}} }
+
+\vspace*{-0.1in}
+
+\gobble{{{\mystar} {\em Note: In Computer Science, certain conferences
+(Marked with a $\star$) are are highly selective and rigorously
+refereed, often by 3 reviewers plus the conference chairs. Conference
+papers are published not as one-page abstracts, but as 8-12 page full
+papers (in 10pt double-column format). For this reason, conference
+papers are considered primary publications in the field. Selectivity
+can be roughly quantitated by the acceptance rate.}}}
+
+\def\Nospacing{\itemsep=0pt\topsep=0pt\partopsep=0pt\parskip=0pt\parsep=0pt}
+
+\makeatletter
+\def\thebibliography#1{\list
+{[\arabic{enumiv}]}{\settowidth\labelwidth{[#1]}\leftmargin\labelwidth
+\advance\leftmargin\labelsep
+\usecounter{enumiv}\Nospacing}
+\def\newblock{\hskip .11em plus .33em minus .07em}
+\sloppy\clubpenalty4000\widowpenalty4000
+\sfcode`\.=1000\relax
+}
+\let\endthebibliography=\endlist
+\makeatother
+
+%%%%%%% begin papers/biblio
+%\begin{thebibliography}{10}
+
+\def\th{$^{\rm{th}}$}
+
+%\def\mybibitem#1#2{\bibitem{#1}{#2}}
+\def\brd{B.~R. Donald}
+%\def\brd{{\bf B.~R. Donald}}
+
+\def\mybibitem#1{\item}
+\begin{Enumerate}
+
+%\input{papers-r01}
+%% %\begin{thebibliography}{10}
+
+%% \def\th{$^{\rm{th}}$}
+
+%% %\def\mybibitem#1#2{\bibitem{#1}{#2}}
+
+%% \def\mybibitem#1{\item}
+%% \begin{Enumerate}
+
+\bibitem{KapurMundyDonald92}
+B.~R. Donald, D.~Kapur, and J.~Mundy.
+\newblock {\em Symbolic and Numerical Computation for Artificial Intelligence}.
+\newblock Academic Press, Harcourt Jovanovich, London, 1992.
+
+\bibitem{CannyDonaldReifXavier93}
+B.~R. Donald, P.~Xavier, J.~Canny, and J.~Reif.
+\newblock Kinodynamic motion planning.
+\newblock {\em Journal of the ACM}, 40(5):1048--1066, 1993.
+
+\bibitem{jcb00-jigsaw}
+C.~Bailey-Kellogg, A.~Widge, J.~J. {Kelley III}, M.~J. Berardi, J.~H.
+ Bushweller, and {\brd}.
+\newblock The {NOESY} {Jigsaw}: Automated protein secondary structure and
+ main-chain assignment from sparse, unassigned {NMR} data.
+\newblock {\em Jour. Comp. Biol.}, 3-4(7):537--558, 2000.
+
+\bibitem{jcb00-sar}
+C.~Bailey-Kellogg, J.~J. {Kelley III}, C.~Stein, and {\brd}.
+\newblock Reducing mass degeneracy in {SAR} by {MS} by stable isotopic
+ labeling.
+\newblock {\em Jour. Comp. Biol.}, 8(1):19--36, 2001.
+
+\gobble{
+\bibitem{icra01}
+C.~Bailey-Kellogg, J.~J. {Kelley III}, R.~Lilien, and {\brd}.
+\newblock Physical geometric algorithms for structural molecular biology.
+\newblock In {\em the Special Session on Computational Biology \& Chemistry,
+ {\it Proc.~{IEEE} Int'l Conf. on Robotics and Automation
+ ({ICRA})}}, pp.~940--947, May 2001.
+}
+
+\bibitem{recomb01}
+C.~Langmead and {\brd}.
+\newblock Extracting structural information using time-frequency analysis of
+ protein {NMR} data.
+\newblock In {\em Proc.~5{\th} Int'l.~Conf.~on
+ Research in Computational Molecular Biology (RECOMB)}, pp.~164--175. ACM
+ Press, April 2001.
+
+\gobble{
+\bibitem{csb02}
+C.~Langmead, C.~R. McClung, and {\brd}.
+\newblock A maximum entropy algorithm for rhythmic analysis of genome-wide
+ expression patterns.
+\newblock In {\em Proc.~IEEE Computer Society Bioinformatics
+ Conference (IEEE CSB)}, pp.~237--245, August 2002.
+}
+
+\bibitem{jcb-rage}
+C.~Langmead, A.~Yan, C.~R. McClung, and {\brd}.
+\newblock Phase-independent rhythmic analysis of genome-wide expression
+ patterns.
+\newblock {\em Journal of Computational Biology}, 10(3-4):521--536, 2003.
+
+\bibitem{jcb-fld03}
+R.~Lilien, H.~Farid, and {\brd}.
+\newblock Probabilistic disease classification of expression-dependent
+ proteomic data from mass spectrometry of human serum.
+\newblock {\em Journal of Computational Biology}, 10(6):925--946, 2003.
+
+\bibitem{recomb03}
+C.~Langmead, A.~Yan, R.~Lilien, L.~Wang, and {\brd}.
+\newblock A polynomial-time nuclear vector replacement algorithm for automated
+ {NMR} resonance assignments.
+\newblock In {\em Proc.~7{\th} Int'l.~Conf.~on
+ Research in Computational Molecuar Biology (RECOMB)}, pp.~176--187,
+ Berlin, Germany, April 2003. ACM Press.
+
+\bibitem{ieeecsb-langmead03}
+C.~Langmead and {\brd}.
+\newblock 3{D} structural homology detection via unassigned residual dipolar
+ couplings.
+\newblock In {\em Proc.~{IEEE} Computer Society Bioinformatics
+ Conference ({CSB})}, pp.~209--217, Stanford, Aug.~2003.
+
+\bibitem{oneil-jbc03}
+R.~O'Neil, R.~Lilien, {\brd}, R.~Stroud, and A.~Anderson.
+\newblock Phylogenetic classification of protozoa based on the structure of the
+ linker domain in the bifunctional enzyme, dihydrofolate reductase-thymidylate
+ synthase.
+\newblock {\em Jour. Biol. Chem.}, 278(52):52980--52987, 2003.
+
+\bibitem{oneil-jem03}
+R.~O'Neil, R.~Lilien, {\brd}, R.~Stroud, and A.~Anderson.
+\newblock The crystal structure of dihydrofolate reductase-thymidylate synthase
+ from {{\em Cryptosporidium hominis}} reveals a novel architecture for the
+ bifunctional enzyme.
+\newblock {\em Jour. Eukaryotic Microbiology}, 50(6):555--556, 2003.
+
+\gobble{
+\bibitem{ieeecsb03-wang}
+L.~Wang, R.~Mettu, R.~Lilien, and {\brd}.
+\newblock An exact algorithm for determining protein backbone structure from
+ {NH} residual dipolar couplings.
+\newblock In {\em Proc.~{IEEE} Computer Society Bioinformatics
+ Conference ({CSB})}, pp.~611--612, Stanford, August 2003.
+}
+
+\bibitem{langmead-jbnmr04}
+C.~Langmead and {\brd}.
+\newblock An expectation/maximization nuclear vector replacement algorithm for
+ automated {NMR} resonance assignments.
+\newblock {\em Jour. Biomolecular {NMR}}, 29(2):111--138, 2004.
+
+\bibitem{wang-jbnmr03}
+L.~Wang and {\brd}.
+\newblock Exact solutions for internuclear vectors and backbone dihedral angles
+ from {NH} residual dipolar couplings in two media, and their application in a
+ systematic search algorithm for determining protein backbone structure.
+\newblock {\em Jour. Biomolecular {NMR}}, 29(3):223--242, 2004.
+
+\bibitem{langmead-jcb04}
+C.~Langmead, A.~Yan, R.~Lilien, L.~Wang, and {\brd}.
+\newblock A polynomial-time nuclear vector replacement algorithm for automated
+ {NMR} resonance assignments.
+\newblock {\em Jour. Comp. Biol.}, 11(2-3):277--298, 2004.
+
+\bibitem{recomb-04}
+R.~Lilien, B.~Stevens, A.~Anderson, and {\brd}.
+\newblock A novel ensemble-based scoring and search algorithm for protein
+ redesign, and its application to modify the substrate specificity of the
+ gramicidin synthetase {A} phenylalanine adenylation enzyme.
+\newblock In {\em Proc.~Eighth Annual International Conference on
+ Research in Computational Molecular Biology ({RECOMB})}, pp.~46--57, San
+ Diego, March 2004.
+
+\bibitem{lilien-acd04}
+R.~Lilien, C.~Bailey-Kellogg, A.~Anderson, and {\brd}.
+\newblock {A subgroup algorithm to identify cross-rotation peaks consistent
+ with non-crystallographic symmetry}.
+\newblock {\em Acta Crystallographica Section D: Biological Crystallography},
+ 60(6):1057--1067, Jun 2004.
+
+\bibitem{LangmeadDonald-csb04}
+C.~Langmead and {\brd}.
+\newblock High-throughput 3{D} structural homology detection via {NMR}
+ resonance assignment.
+\newblock In {\em Proc.~{IEEE} Computational Systems
+ Bioinformatics Conference ({CSB})}, pp.~278--289, Stanford, CA, August
+ 2004.
+
+\gobble{
+\bibitem{Dartmouth:TR2004-492}
+R.~Lilien, M.~Sridharan, and {\brd}.
+\newblock {Identification of Novel Small Molecule Inhibitors of Core-Binding
+ Factor Dimerization by Computational Screening against NMR Molecular
+ Ensembles}.
+\newblock Technical Report TR2004-492, Dartmouth College, Computer Science,
+ Hanover, NH, March 2004.
+}
+
+\bibitem{WangDonald-csb04}
+L.~Wang and {\brd}.
+\newblock Analysis of a systematic search-based algorithm for determining
+ protein backbone structure from a minimal number of residual dipolar
+ couplings.
+\newblock In {\em Proc.~{IEEE} Computational Systems
+ Bioinformatics Conference ({CSB})}, pp.~319--330, Stanford, CA, August
+ 2004.
+
+\bibitem{ismb05}
+R.~Mettu, R.~Lilien, and B.~R. Donald.
+\newblock High-throughput inference of protein-protein interfaces from
+ unassigned {NMR} data.
+\newblock {\em Bioinformatics}, 2005; {\bf{21}}(Suppl.~1):i292--i301.
+\gobble{special issue from papers presented at the 2005 Int'l.~Conf.~on
+Intelligent Systems for Molecular Biology, Detroit, MI) }
+
+\mybibitem{jcb04-NRPS}
+R.~Lilien, B.~Stevens, A.~Anderson, and {\brd}.
+\newblock A novel ensemble-based scoring and search algorithm for protein
+ redesign, and its application to modify the substrate specificity of the
+ gramicidin synthetase {A} phenylalanine adenylation enzyme.
+\newblock {\em Journal of Computational Biology} 2005; {\bf{12}}(6-7):740--761.
+
+\mybibitem{csb05-noe}
+L.~Wang and B.~R. Donald.
+\newblock An efficient and accurate algorithm for assigning nuclear
+ {Overhauser} effect restraints using a rotamer library ensemble and residual
+ dipolar couplings.
+\newblock In {\em Proceedings of the {IEEE} Computational Systems
+ Bioinformatics Conference ({CSB})}, pp.~189--202,
+Stanford, CA, August 2005.
+
+\mybibitem{csb05-poly}
+L.~Wang, R.~Mettu, and B.~R. Donald.
+\newblock An algebraic geometry approach to protein backbone structure
+ determination from {NMR} data.
+\newblock In {\em Proceedings of the {IEEE} Computational Systems
+ Bioinformatics Conference ({CSB})}, pp.~235--246, Stanford, CA,
+August 2005.
+
+\gobble{
+\mybibitem{recomb-06}
+I.~Georgiev, R.~Lilien, and B.~R. Donald.
+\newblock A novel minimized dead-end elimination criterion and its application
+ to protein redesign in a hybrid scoring and search algorithm for computing
+ partition functions over molecular ensembles.
+\newblock In {\em Proc.~Tenth Ann.~Intl.~Conf.~on
+ Research in Computational Molecular Biology (RECOMB)}, pp. 530--545,
+ Venice, Italy, April 2006. Springer Berlin, Lecture Notes in
+ Computer Science, LNBI 3909.
+}
+
+\bibitem{ismb06}
+I.~Georgiev, R.~Lilien, and B.~R. Donald.
+\newblock Improved pruning algorithms and divide-and-conquer strategies for
+ dead-end elimination, with application to protein design.
+\newblock {\em Bioinformatics} 2006; {\bf{22}}(14):e174--183.
+\newblock Special issue on papers from the Int'l Conf. on Intelligent
+ Sys. for Mol. Biol. ({ISMB 2006}), Fortaleza, Brazil.
+
+\bibitem{csb06}
+L.~Wang and B.~R. Donald.
+\newblock A data-driven, systematic search algorithm for structure
+ determination of denatured or disordered proteins.
+\newblock In {\em Proceedings of the LSS Computational Systems Bioinformatics
+ Conference ({CSB})}, Stanford, CA, August 2006.
+ Pages 67-78. ISBN 1-86094-700-X.
+
+\bibitem{jcb-poly06}
+L.~Wang, R.~Mettu, and B.~R. Donald.
+\newblock A polynomial-time algorithm for {\em de novo} protein backbone
+ structure determination from {NMR} data.
+\newblock {\em Journal of Computational Biology}, 2006.
+\newblock In press.
+
+\bibitem{proteins06}
+S.~Potluri, A.~Yan, B.~R. Donald, and C.~Bailey-Kellogg.
+\newblock Structure determination of symmetric homo-oligomers by a complete
+ search of symmetry configuration space using {NMR} restraints and van der
+ {Waals} packing.
+\newblock {\em Proteins: Structure, Function and Bioinformatics},
+ 2006; 65(1):203--219.
+
+%\end{Enumerate}
+
+%\end{thebibliography}
+
+\end{Enumerate}
+
+%\end{thebibliography}
+%%%%%%% endpapers/biblio
+
+
+%\input{papers}
+%\input{papers2}
+
+\MEMS{Change URL}
+
+\gobble{
+\begin{center}
+{\sf Publications available online at {\tt www.cs.dartmouth.edu/\lower1.50ex\hbox{\LARGE{\~{}}}brd/Research/Bio/}}
+\end{center}
+}
+
+%\newpage
+%\setcounter{page}{1} % or whatever
+
+\subsection*{C. Research Projects and Funding}
+
+\subsection*{CURRENT SUPPORT}
+
+\def\myhrule{\smallskip\hrule\smallskip}
+
+\myhrule
+\noindent \begin{tabular}{ll}
+DONALD, BRUCE R. & ONGOING\\
+ (PI: Donald) & 2002-2007 \\
+ NIH/NIGMS & R01 GM-65982\\
+{\em Automated NMR Assignment and Protein Structure}\\
+\effortamount{\$150,000 &\\}
+\end{tabular}
+
+The long-term objective of this project is the development of new
+computational methods for biomolecular NMR, to be applied in
+structural genomics. Two main foci are novel algorithms for automated
+assignments, and algorithms for automated structure determination from
+solution-state protein NMR.
+
+\myhrule
+\noindent \begin{tabular}{ll}
+DONALD, BRUCE R.& ONGOING \\
+(PI: A. Anderson, Co-investigator: B. Donald) & 2003-2008\\
+NIH (NIGMS \& NIAID) &
+R01 GM-067542 \\
+{\em Design of C.~parvum and T.~gondii DHFR-TS Inhibitors}\\
+\effortamount{\$150,000 {(total); Donald sub only: \$11,000.} & \\}
+\end{tabular}
+
+The major goal of this project is to design selective and potent
+inhibitors against the dihydrofolate reductase (DHFR) domain of
+dihydrofolate reductase-thymidylate synthase (DHFR-TS) from
+{\em Cryptosporidium hominis} and {\em Toxoplasma gondii. }
+
+\myhrule
+
+\subsection*{Completed Research Support}
+
+\myhrule
+\noindent
+\begin{tabular}{ll}
+DONALD, BRUCE R. & COMPLETED\\
+ (PI: Donald) & 2003-2005 \\
+ NSF & EIA-0305444\\
+{\em Algorithmic Challenges in Computational Biology}\\
+\effortamount{ \$37,500 &\\}
+\end{tabular}
+
+This grant supported computational research in functional genomics and
+computational methods in NMR structural biology.
+
+%\myhrule
+
+%\newpage
+
+\myhrule
+
+\noindent
+\begin{tabular}{ll}
+DONALD, BRUCE R. & COMPLETED\\
+ (co-PI: B.~Donald) & 1998-2003 \\
+ NSF & NSF 98-02068 \\
+\end{tabular}
+
+{\em Systems Science for Physical Geometric Algorithms}
+
+
+NSF research infrastructure grant. The major goals of this project
+were to provide research infrastructure for computational science and
+computational biology in the Computer Science Department. This
+includes workstations, supercomputing facilities, networking, etc.
+
+\myhrule
+
+\newpage
+
+\myhrule
+
+\noindent
+\begin{tabular}{ll}
+DONALD, BRUCE R. & COMPLETED\\
+ (PI: Donald) & 2001-2003 \\
+ NSF & EIA-0102710\\
+\end{tabular}
+
+{\em Physical Geometric Algorithms and Systems for
+ High-Throughput NMR Structural Biology}
+
+ The major goals of this project were to
+develop novel computational methods for biomolecular NMR.
+
+\myhrule
+
+
+\noindent
+\begin{tabular}{ll}
+DONALD, BRUCE R. & COMPLETED\\
+ (PI: Donald) & 2001-2003 \\
+ NSF & EIA-0102712\\
+\end{tabular}
+
+{\em Physical Geometric Algorithms and Systems for
+ Structural Biology using Mass Spectrometry}
+
+The major goals of this project were to
+develop novel computational methods for structural mass
+spectrometry and proteomics.
+
+\myhrule
+
+\noindent
+\begin{tabular}{ll}
+DONALD, BRUCE R. & COMPLETED\\
+ (PI: Donald) & 2000-2006 \\
+ DHS/ODP & 2000-DT-CX-K001
+\end{tabular}
+
+{\em Microelectromechanical Systems for Infosecurity}
+
+
+The major goal of this project was the development of novel
+microelectromechanical systems ("MEMS") to be useful in micro- and
+nano-technology applications for homeland security, in particular,
+information security and micro robotics.
+
+\myhrule
+
+
+
+\subsection*{PENDING SUPPORT}
+
+
+\myhrule
+\noindent \begin{tabular}{ll} DONALD, BRUCE R.& PENDING \\
+ (PI: D. Madden, Co-investigator: B. Donald) & 2007-2012\\
+Submitted to NIH (NIDDK) & R01 Application \\
+ {\em Keeping CFTR in its
+Place: An Integrated Small-Molecule Approach}\\
+\end{tabular}
+
+The major goal of this project is to develop an integrated
+experimental and theoretical approach to identifying small-molecule
+inhibitors selective for the CAL PDZ domain (a molecular scaffolding
+protein), which interacts with the cytoplasmic C-terminus of the
+cystic fibrosis transmembrane conductance regulator protein (CFTR).
+
+
+\myhrule
+\noindent \begin{tabular}{ll} DONALD, BRUCE R.& PENDING \\
+ (PI: J. Hoch, Co-PIs: B. Donald, G. Wagner, A. Alexandrescu,
+ P. Bolton) & 2006-2008\\
+Submitted to NSF & MRI application \\
+{\em Acquisition of a High Perfomance Computational
+Resource for NMR Structural Biology}.&\\
+\end{tabular}
+
+The major goal of this project is the acquisition of a supercomputer
+that will be attached to a high field NMR spectrometer in order to
+facilitate the development of data-directed high-throughput
+computational protocols for NMR data processing, automated assignment,
+and structure determination.
+
+\myhrule
+
+\noindent \begin{tabular}{ll} DONALD, BRUCE R.& PENDING \\
+ (PI: B. Donald) & 2007-2012\\
+Submitted to NIH (NIGMS) & R01 Application \\
+ {\em Computational Active-Site Redesign and Binding Prediction via Molecular Ensembles}\\
+\end{tabular}
+
+The major goal of this project is to develop novel algorithms to plan
+structure-based site-directed mutations to a protein's active site in
+order to modify its function. The new algorithms will make progress
+towards the long-term objective of reprogramming the specificity of
+non-ribosomal peptide synthetase domains, whose products include
+natural antibiotics, antifungals, antivirals, immunosuppressants, and
+antineoplastics.
+
+
+\myhrule
+
+
+\end{document}
+
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