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-rw-r--r--graphics/mcf2graph/mcf_manual.tex54
1 files changed, 28 insertions, 26 deletions
diff --git a/graphics/mcf2graph/mcf_manual.tex b/graphics/mcf2graph/mcf_manual.tex
index 71ac080b10..e3aac3ed4b 100644
--- a/graphics/mcf2graph/mcf_manual.tex
+++ b/graphics/mcf2graph/mcf_manual.tex
@@ -1,7 +1,9 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Molecular Coding Format manual by Akira Yamaji 2022.03.27
+% Molecular Coding Format manual by Akira Yamaji 2022.05.08
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[a4paper]{article}
+%%%\usepackage{graphicx}
+%%%\usepackage{hyperref}
\usepackage[pdftex]{graphicx}
\usepackage[pdftex]{hyperref}
%%%\usepackage[dvipdfmx]{graphicx}
@@ -1817,40 +1819,40 @@ file name = 'temp-mc.aux'
\paragraph{(Output)}
\begin{verbatim}
===========================================================================
- No. 3 / Name = Cytosine
+ No[3],Name<Cytosine>,Category<biological>,File<mcf_library.mcf>
---------------------------------------------------------------------------
- <30,?6,{4,6}=dl,4:N,3://O,2:NH,5:/NH2
+<30,?6,{4,6}=dl,4:N,3://O,2:NH,5:/NH2
+---------------------------------------------------------------------------
+ Row[1],Length[37],Commands[7],&Code[59],Warning[0]
---------------------------------------------------------------------------
- row= 1 / length= 37 / commands= 7
- {}=X = 1 / {}:X = 0 / '() = 0 / @ = 0 / & = 0 / < = 1
+ =[1]({}=[1]), :[4]({}:[0]), '()[0]
+ @[0],&[0],<[1],~[0],^[0],`[0],>[0],|[0],||[0],#[0],##[0]
---------------------------------------------------------------------------
- Warnings = 0 / Code= 60
- Width * Height = 34.68852 * 47.4036
- Shift width * height = 0 * -14.46167
- Bond length = 12.75589 Atom size = 5.38914
- Atom count= 9 Bond count= 9 Ring count= 1 Hide H count= 2
+ Width[30.92432],Height[42.36536], Shift x[0],Shift y[-12.99213]
+ Bond length[11.33856],Atom size[4.8819]
---------------------------------------------------------------------------
+ Atom[9],Bond[9],Ring[1],Hide H[2]
< NO. ><atom(s) >( x axis , y axis )<bond><hideH><chg>
A1 C ( 0 , 0 ) 3 1
- A2 N ( 0.866 , -0.5 ) 3
- A3 C ( 1.732 , 0 ) 4
- A4 N ( 1.732 , 1 ) 3
- A5 C ( 0.866 , 1.5 ) 4
+ A2 N ( 1 , 0 ) 3
+ A3 C ( 2 , 0 ) 4
+ A4 N ( 2 , 1 ) 3
+ A5 C ( 1 , 2 ) 4
A6 C ( 0 , 1 ) 3 1
- A7 O ( 2.508 , -0.448 ) 2
- A8 H ( 0.866 , -0.922 ) 1
- A9 NH2 ( 0.866 , 2.371 ) 1
+ A7 O ( 3 , 0 ) 2
+ A8 H ( 1 , -1 ) 1
+ A9 NH2 ( 1 , 2 ) 1
---------------------------------------------------------------------------
< NO. >< bond (sdt)><angle +( +- )><length ( pt )>
- B1 1 -> 2 ( 1) 330 ( -30) 1 ( 12.76)
- B2 2 -> 3 ( 1) 30 ( 30) 1 ( 12.76)
- B3 3 -> 4 ( 1) 90 ( 90) 1 ( 12.76)
- B4 4 -> 5 ( 2) 150 ( 150) 1 ( 12.76)
- B5 5 -> 6 ( 1) 210 ( -150) 1 ( 12.76)
- B6 6 -> 1 ( 2) 270 ( -90) 1 ( 12.76)
- B7 3 -> 7 ( 2) 330 ( -30) 0.66 ( 8.42)
- B8 2 -> 8 ( 1) 270 ( -90) 0.36 ( 4.59)
- B9 5 -> 9 ( 1) 90 ( 90) 0.66 ( 8.42)
+ B1 1 -> 2 ( 1) 330 ( -30) 1 ( 11)
+ B2 2 -> 3 ( 1) 30 ( 30) 1 ( 11)
+ B3 3 -> 4 ( 1) 90 ( 90) 1 ( 11)
+ B4 4 -> 5 ( 2) 150 ( 150) 1 ( 11)
+ B5 5 -> 6 ( 1) 210 ( -150) 1 ( 11)
+ B6 6 -> 1 ( 2) 270 ( -90) 1 ( 11)
+ B7 3 -> 7 ( 2) 330 ( -30) 0.66 ( 7)
+ B8 2 -> 8 ( 1) 270 ( -90) 0.36 ( 4)
+ B9 5 -> 9 ( 1) 90 ( 90) 0.66 ( 7)
---------------------------------------------------------------------------
<atom>( atom wt )[ mi wt ] < cnt > < sum wt >[ sum mi wt ]
C ( 12.0107)[ 12] * 4 48.04279[ 48]