diff options
Diffstat (limited to 'graphics/mcf2graph/mcf_manual.tex')
-rw-r--r-- | graphics/mcf2graph/mcf_manual.tex | 54 |
1 files changed, 28 insertions, 26 deletions
diff --git a/graphics/mcf2graph/mcf_manual.tex b/graphics/mcf2graph/mcf_manual.tex index 71ac080b10..e3aac3ed4b 100644 --- a/graphics/mcf2graph/mcf_manual.tex +++ b/graphics/mcf2graph/mcf_manual.tex @@ -1,7 +1,9 @@ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Molecular Coding Format manual by Akira Yamaji 2022.03.27 +% Molecular Coding Format manual by Akira Yamaji 2022.05.08 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \documentclass[a4paper]{article} +%%%\usepackage{graphicx} +%%%\usepackage{hyperref} \usepackage[pdftex]{graphicx} \usepackage[pdftex]{hyperref} %%%\usepackage[dvipdfmx]{graphicx} @@ -1817,40 +1819,40 @@ file name = 'temp-mc.aux' \paragraph{(Output)} \begin{verbatim} =========================================================================== - No. 3 / Name = Cytosine + No[3],Name<Cytosine>,Category<biological>,File<mcf_library.mcf> --------------------------------------------------------------------------- - <30,?6,{4,6}=dl,4:N,3://O,2:NH,5:/NH2 +<30,?6,{4,6}=dl,4:N,3://O,2:NH,5:/NH2 +--------------------------------------------------------------------------- + Row[1],Length[37],Commands[7],&Code[59],Warning[0] --------------------------------------------------------------------------- - row= 1 / length= 37 / commands= 7 - {}=X = 1 / {}:X = 0 / '() = 0 / @ = 0 / & = 0 / < = 1 + =[1]({}=[1]), :[4]({}:[0]), '()[0] + @[0],&[0],<[1],~[0],^[0],`[0],>[0],|[0],||[0],#[0],##[0] --------------------------------------------------------------------------- - Warnings = 0 / Code= 60 - Width * Height = 34.68852 * 47.4036 - Shift width * height = 0 * -14.46167 - Bond length = 12.75589 Atom size = 5.38914 - Atom count= 9 Bond count= 9 Ring count= 1 Hide H count= 2 + Width[30.92432],Height[42.36536], Shift x[0],Shift y[-12.99213] + Bond length[11.33856],Atom size[4.8819] --------------------------------------------------------------------------- + Atom[9],Bond[9],Ring[1],Hide H[2] < NO. ><atom(s) >( x axis , y axis )<bond><hideH><chg> A1 C ( 0 , 0 ) 3 1 - A2 N ( 0.866 , -0.5 ) 3 - A3 C ( 1.732 , 0 ) 4 - A4 N ( 1.732 , 1 ) 3 - A5 C ( 0.866 , 1.5 ) 4 + A2 N ( 1 , 0 ) 3 + A3 C ( 2 , 0 ) 4 + A4 N ( 2 , 1 ) 3 + A5 C ( 1 , 2 ) 4 A6 C ( 0 , 1 ) 3 1 - A7 O ( 2.508 , -0.448 ) 2 - A8 H ( 0.866 , -0.922 ) 1 - A9 NH2 ( 0.866 , 2.371 ) 1 + A7 O ( 3 , 0 ) 2 + A8 H ( 1 , -1 ) 1 + A9 NH2 ( 1 , 2 ) 1 --------------------------------------------------------------------------- < NO. >< bond (sdt)><angle +( +- )><length ( pt )> - B1 1 -> 2 ( 1) 330 ( -30) 1 ( 12.76) - B2 2 -> 3 ( 1) 30 ( 30) 1 ( 12.76) - B3 3 -> 4 ( 1) 90 ( 90) 1 ( 12.76) - B4 4 -> 5 ( 2) 150 ( 150) 1 ( 12.76) - B5 5 -> 6 ( 1) 210 ( -150) 1 ( 12.76) - B6 6 -> 1 ( 2) 270 ( -90) 1 ( 12.76) - B7 3 -> 7 ( 2) 330 ( -30) 0.66 ( 8.42) - B8 2 -> 8 ( 1) 270 ( -90) 0.36 ( 4.59) - B9 5 -> 9 ( 1) 90 ( 90) 0.66 ( 8.42) + B1 1 -> 2 ( 1) 330 ( -30) 1 ( 11) + B2 2 -> 3 ( 1) 30 ( 30) 1 ( 11) + B3 3 -> 4 ( 1) 90 ( 90) 1 ( 11) + B4 4 -> 5 ( 2) 150 ( 150) 1 ( 11) + B5 5 -> 6 ( 1) 210 ( -150) 1 ( 11) + B6 6 -> 1 ( 2) 270 ( -90) 1 ( 11) + B7 3 -> 7 ( 2) 330 ( -30) 0.66 ( 7) + B8 2 -> 8 ( 1) 270 ( -90) 0.36 ( 4) + B9 5 -> 9 ( 1) 90 ( 90) 0.66 ( 7) --------------------------------------------------------------------------- <atom>( atom wt )[ mi wt ] < cnt > < sum wt >[ sum mi wt ] C ( 12.0107)[ 12] * 4 48.04279[ 48] |