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author | Norbert Preining <norbert@preining.info> | 2021-04-07 03:01:59 +0000 |
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committer | Norbert Preining <norbert@preining.info> | 2021-04-07 03:01:59 +0000 |
commit | 70fe7f94e8281b0691a51754da3e2d40b1dd7732 (patch) | |
tree | f4be4cdf15aa796af9ae46eaf33d24279659cdb9 /macros/latex/contrib/texshade/README | |
parent | e4d1c68b2517d031bb9adc055fe19d1051c81042 (diff) |
CTAN sync 202104070301
Diffstat (limited to 'macros/latex/contrib/texshade/README')
-rw-r--r-- | macros/latex/contrib/texshade/README | 35 |
1 files changed, 14 insertions, 21 deletions
diff --git a/macros/latex/contrib/texshade/README b/macros/latex/contrib/texshade/README index 71e52fa0c2..fe67201661 100644 --- a/macros/latex/contrib/texshade/README +++ b/macros/latex/contrib/texshade/README @@ -1,7 +1,6 @@ - TeXshade v1.25 + TeXshade v1.26 >> - >> A LaTeX package for setting nucleotide and peptide alignments, - >> fingerprints, as well as sequence and subfamily logos. + >> A LaTeX package for setting nucleotide and peptide alignments. >> >> Setting alignments of nucleotides and peptides for publication >> or presentation purposes is usually a time consuming two-step @@ -27,7 +26,7 @@ >> ding modes. TeXshade combines highest flexibility and the >> habitual TeX output quality--with reasonable time expenditure. >> - Copyright (C) 1999 - 2018 Eric Beitz + Copyright (C) 1999 - 2021 Eric Beitz @@ -42,8 +41,7 @@ texshade.ins Batch file, run through LaTeX texshade.dtx Docstrip archive, run twice through LaTeX - tsfaq.tex Frequently asked questions about TeXshade - texshade.txt This file + README This file (a) FILES THAT WILL BE GENERATED FROM TEXSHADE.INS @@ -58,6 +56,10 @@ AQP1.phd Example PHD secondary structure file AQP1_HMM.sgl Example HMMTOP topology data (single line format) AQP1_HMM.ext Example HMMTOP topology data (extended format) + AQP_sequence_logo_1FX8.cmd + Example structure meme file + AQP_subfamily_logo_1FX8.cmd + Example structure meme file Standard.cod Standard genetic code definitions Ciliate.cod Ciliate macronuclear genetic code definitions @@ -65,6 +67,8 @@ (b) FILE THAT WILL BE GENERATED FROM TEXSHADE.DTX texshade.dvi Package documentation + or + texshade.pdf Package documentation @@ -89,17 +93,13 @@ TeXshade needs lots of TeX's memory, so adjust your parameter set- tings to make TeXshade feel comfortable. The documentation is a - good test for this. (If you encounter problems texing the doc, you - should tex and read section A of the FAQ-list (see d below) or - download an on-line version [PDF-, DVI-, or PostScript format] at - http://homepages.uni-tuebingen.de/beitz/) - + good test for this. + The resulting file "texshade.dvi" can be viewed and printed using a DVI-viewer which is able to display embedded PostScript. Another possibility is to run "texshade.dvi" through DVIPS, a DVI to Post- Script converter, and finally view and print the converted file - which will be most likely "texshade.ps" with GhostView from the GNU - free software foundation. + which will be most likely "texshade.ps" with GhostView from the GNU free software foundation. TeXshade makes use of "color.sty" by David Carlisle. This style is part of the Standard LaTeX Graphics Bundle. Usually, the bundle is @@ -118,18 +118,11 @@ the files together. - (d) THE FAQ LIST - - The FAQ list contains frequently asked questions about the package. - Use it as a helpful source for solving problems with TeXshade. You - get the list by simply running "tsfaq.tex" through LaTeX once. - - 3 - CONTACT E-Mail: ebeitz@pharmazie.uni-kiel.de - WWW: http://www.pharmazie.uni-kiel.de/chem/ + WWW: https://www.pharmazie.uni-kiel.de/en/pharmceitica/ (On-line documentation and updates) Address: Eric Beitz, University of Kiel, Pharmaceutical Chemistry, Gutenbergstrasse 76, D-24118 Kiel (Germany) |