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-rw-r--r--Master/texmf-dist/doc/generic/pgfplots/README9
-rw-r--r--Master/texmf-dist/doc/generic/pgfplots/license_prepcontour/COPYING339
-rw-r--r--Master/texmf-dist/doc/latex/pgfplots/TeX-programming-notes.pdfbin373195 -> 375690 bytes
-rw-r--r--Master/texmf-dist/doc/latex/pgfplots/pgfplots.doc.src.tar.bz2bin2040887 -> 2048620 bytes
-rw-r--r--Master/texmf-dist/doc/latex/pgfplots/pgfplots.pdfbin12586804 -> 12681125 bytes
-rw-r--r--Master/texmf-dist/doc/latex/pgfplots/pgfplotstable.pdfbin612477 -> 612541 bytes
-rw-r--r--Master/texmf-dist/doc/latex/pgfplots/pgfplotstodo.pdfbin395815 -> 395952 bytes
-rw-r--r--Master/texmf-dist/source/context/third/pgfplots/pgfplotstests.context.tar.bz2bin724183 -> 723974 bytes
-rw-r--r--Master/texmf-dist/source/latex/pgfplots/pgfplotstests.tar.bz2bin1000385 -> 1040165 bytes
-rw-r--r--Master/texmf-dist/tex/generic/pgfplots/libs/tikzlibrarypgfplots.contourlua.code.tex91
-rwxr-xr-xMaster/texmf-dist/tex/generic/pgfplots/lua/prepcontour.lua708
-rwxr-xr-xMaster/texmf-dist/tex/generic/pgfplots/lua/prepcontour_cli.lua97
-rw-r--r--Master/texmf-dist/tex/generic/pgfplots/numtable/pgfplotstable.code.tex113
-rw-r--r--Master/texmf-dist/tex/generic/pgfplots/pgfcontrib/tikzlibrarydecorations.softclip.code.tex3
-rw-r--r--Master/texmf-dist/tex/generic/pgfplots/pgfplots.code.tex22
-rw-r--r--Master/texmf-dist/tex/generic/pgfplots/pgfplots.revision.tex8
-rw-r--r--Master/texmf-dist/tex/generic/pgfplots/pgfplotsmeshplotimage.code.tex20
-rw-r--r--Master/texmf-dist/tex/generic/pgfplots/pgfplotsplothandlers.code.tex86
-rw-r--r--Master/texmf-dist/tex/generic/pgfplots/pgfplotsstackedplots.code.tex5
-rw-r--r--Master/texmf-dist/tex/generic/pgfplots/util/pgfplotsutil.code.tex22
20 files changed, 1463 insertions, 60 deletions
diff --git a/Master/texmf-dist/doc/generic/pgfplots/README b/Master/texmf-dist/doc/generic/pgfplots/README
index 1ee3cf37c9c..e2997ba40e4 100644
--- a/Master/texmf-dist/doc/generic/pgfplots/README
+++ b/Master/texmf-dist/doc/generic/pgfplots/README
@@ -23,7 +23,7 @@ Please take a look at
and
doc/latex/pgfplots/pgfplotstable.pdf.
-Copyright 2007-2020 by Christian Feuersaenger.
+Copyright 2007-2021 by Christian Feuersaenger.
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@@ -40,6 +40,13 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
HISTORY:
+1.18
+- new feature: 'contour lua', implemented and contributed by Francesco Poli
+- new feature: ignore empty coordinates when computing regression lines
+- new feature: improve log-regression fitting of exponential functions (using variance format=linear)
+- fixed bug #390: image plots in log mode failed to work. Also fixed issues with mesh/ordering=y varies
+- fixed bug #219: handle NaN in stacked plots
+
1.17
- fixed bug: restore compatibility with pgf/tikz circle syntax inside of pgfplots
- new feature #62: 'coordinate style' which allows to associate options with individual coordinates.
diff --git a/Master/texmf-dist/doc/generic/pgfplots/license_prepcontour/COPYING b/Master/texmf-dist/doc/generic/pgfplots/license_prepcontour/COPYING
new file mode 100644
index 00000000000..d159169d105
--- /dev/null
+++ b/Master/texmf-dist/doc/generic/pgfplots/license_prepcontour/COPYING
@@ -0,0 +1,339 @@
+ GNU GENERAL PUBLIC LICENSE
+ Version 2, June 1991
+
+ Copyright (C) 1989, 1991 Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+ Preamble
+
+ The licenses for most software are designed to take away your
+freedom to share and change it. By contrast, the GNU General Public
+License is intended to guarantee your freedom to share and change free
+software--to make sure the software is free for all its users. This
+General Public License applies to most of the Free Software
+Foundation's software and to any other program whose authors commit to
+using it. (Some other Free Software Foundation software is covered by
+the GNU Lesser General Public License instead.) You can apply it to
+your programs, too.
+
+ When we speak of free software, we are referring to freedom, not
+price. Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+this service if you wish), that you receive source code or can get it
+if you want it, that you can change the software or use pieces of it
+in new free programs; and that you know you can do these things.
+
+ To protect your rights, we need to make restrictions that forbid
+anyone to deny you these rights or to ask you to surrender the rights.
+These restrictions translate to certain responsibilities for you if you
+distribute copies of the software, or if you modify it.
+
+ For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must give the recipients all the rights that
+you have. You must make sure that they, too, receive or can get the
+source code. And you must show them these terms so they know their
+rights.
+
+ We protect your rights with two steps: (1) copyright the software, and
+(2) offer you this license which gives you legal permission to copy,
+distribute and/or modify the software.
+
+ Also, for each author's protection and ours, we want to make certain
+that everyone understands that there is no warranty for this free
+software. If the software is modified by someone else and passed on, we
+want its recipients to know that what they have is not the original, so
+that any problems introduced by others will not reflect on the original
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+ Finally, any free program is threatened constantly by software
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+patent must be licensed for everyone's free use or not licensed at all.
+
+ The precise terms and conditions for copying, distribution and
+modification follow.
+
+ GNU GENERAL PUBLIC LICENSE
+ TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+
+ 0. This License applies to any program or other work which contains
+a notice placed by the copyright holder saying it may be distributed
+under the terms of this General Public License. The "Program", below,
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+Activities other than copying, distribution and modification are not
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+ 1. You may copy and distribute verbatim copies of the Program's
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+You may charge a fee for the physical act of transferring a copy, and
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+Foundation.
+
+ 10. If you wish to incorporate parts of the Program into other free
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+ NO WARRANTY
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+
+ 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
+REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
+INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
+OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
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+YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
+PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGES.
+
+ END OF TERMS AND CONDITIONS
+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+convey the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+ <one line to give the program's name and a brief idea of what it does.>
+ Copyright (C) <year> <name of author>
+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+Also add information on how to contact you by electronic and paper mail.
+
+If the program is interactive, make it output a short notice like this
+when it starts in an interactive mode:
+
+ Gnomovision version 69, Copyright (C) year name of author
+ Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+ This is free software, and you are welcome to redistribute it
+ under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License. Of course, the commands you use may
+be called something other than `show w' and `show c'; they could even be
+mouse-clicks or menu items--whatever suits your program.
+
+You should also get your employer (if you work as a programmer) or your
+school, if any, to sign a "copyright disclaimer" for the program, if
+necessary. Here is a sample; alter the names:
+
+ Yoyodyne, Inc., hereby disclaims all copyright interest in the program
+ `Gnomovision' (which makes passes at compilers) written by James Hacker.
+
+ <signature of Ty Coon>, 1 April 1989
+ Ty Coon, President of Vice
+
+This General Public License does not permit incorporating your program into
+proprietary programs. If your program is a subroutine library, you may
+consider it more useful to permit linking proprietary applications with the
+library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.
diff --git a/Master/texmf-dist/doc/latex/pgfplots/TeX-programming-notes.pdf b/Master/texmf-dist/doc/latex/pgfplots/TeX-programming-notes.pdf
index 34f83313f64..a6c9987130d 100644
--- a/Master/texmf-dist/doc/latex/pgfplots/TeX-programming-notes.pdf
+++ b/Master/texmf-dist/doc/latex/pgfplots/TeX-programming-notes.pdf
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index 3845feae465..1b156a7dd85 100644
--- a/Master/texmf-dist/doc/latex/pgfplots/pgfplots.doc.src.tar.bz2
+++ b/Master/texmf-dist/doc/latex/pgfplots/pgfplots.doc.src.tar.bz2
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index 550ca443425..482d68a347d 100644
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+++ b/Master/texmf-dist/doc/latex/pgfplots/pgfplots.pdf
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index e3413a206e7..a67a6027dea 100644
--- a/Master/texmf-dist/doc/latex/pgfplots/pgfplotstable.pdf
+++ b/Master/texmf-dist/doc/latex/pgfplots/pgfplotstable.pdf
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index fc58c7866bf..29f1bd09aa6 100644
--- a/Master/texmf-dist/doc/latex/pgfplots/pgfplotstodo.pdf
+++ b/Master/texmf-dist/doc/latex/pgfplots/pgfplotstodo.pdf
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index 680e46967fe..b4df845a4ca 100644
--- a/Master/texmf-dist/source/context/third/pgfplots/pgfplotstests.context.tar.bz2
+++ b/Master/texmf-dist/source/context/third/pgfplots/pgfplotstests.context.tar.bz2
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diff --git a/Master/texmf-dist/source/latex/pgfplots/pgfplotstests.tar.bz2 b/Master/texmf-dist/source/latex/pgfplots/pgfplotstests.tar.bz2
index b81574feaeb..1a196fdf4b5 100644
--- a/Master/texmf-dist/source/latex/pgfplots/pgfplotstests.tar.bz2
+++ b/Master/texmf-dist/source/latex/pgfplots/pgfplotstests.tar.bz2
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diff --git a/Master/texmf-dist/tex/generic/pgfplots/libs/tikzlibrarypgfplots.contourlua.code.tex b/Master/texmf-dist/tex/generic/pgfplots/libs/tikzlibrarypgfplots.contourlua.code.tex
new file mode 100644
index 00000000000..f7821013eb5
--- /dev/null
+++ b/Master/texmf-dist/tex/generic/pgfplots/libs/tikzlibrarypgfplots.contourlua.code.tex
@@ -0,0 +1,91 @@
+%--------------------------------------------
+%
+% Package pgfplots
+%
+% Provides a user-friendly interface to create function plots (normal
+% plots, semi-logplots and double-logplots).
+%
+% It is based on Till Tantau's PGF package.
+%
+% Copyright 2007-2021 by Christian Feuersänger.
+%
+% This program is free software: you can redistribute it and/or modify
+% it under the terms of the GNU General Public License as published by
+% the Free Software Foundation, either version 3 of the License, or
+% (at your option) any later version.
+%
+% This program is distributed in the hope that it will be useful,
+% but WITHOUT ANY WARRANTY; without even the implied warranty of
+% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+% GNU General Public License for more details.
+%
+% You should have received a copy of the GNU General Public License
+% along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+
+\ifpgfplots@LUA@supported
+ \pgfplotsutil@directlua{require("prepcontour");}
+ \pgfplotsset{
+ contour lua/.style={
+ contour external={%
+ % we decided to NOT precompute contour/levels:
+ % @before cmd=\pgfplotscontourpopulateallkeys,
+ scanline marks=required,
+ script type=lua,
+ %
+ % this library consumes FOUR coordinates...
+ script input format=x y z meta,
+ % ... and it also generates FOUR. Always read the last one
+ % as it is never subject to rounding issues within the
+ % same contour line:
+ output point meta=explicit,
+ %
+ script={
+ copylines = 0;
+ nblocks = \if 0\ordering \pgfkeysvalueof{/pgfplots/mesh/rows}\else \pgfkeysvalueof{/pgfplots/mesh/cols}\fi;
+ nlines = \if 0\ordering \pgfkeysvalueof{/pgfplots/mesh/cols}\else \pgfkeysvalueof{/pgfplots/mesh/rows}\fi;
+ if copylines == nil or nblocks == nil or nlines == nil then
+ io.stderr:write("failed to parse arguments");
+ os.exit(2);
+ end;
+ yvaries = \if 0\ordering 'x'\else 'y'\fi;
+ yvaries = (yvaries == 'y');
+ infile = io.open(\"\infile\", \"r\");
+ outfile = io.open(\"\outfile\", \"w\");
+ mesh = PrepcMesh.new(yvaries, nblocks, nlines, copylines, infile, outfile);
+ \ifpgfplotsplothandlercontour@corners
+ corners = true;
+ \else
+ corners = false;
+ \fi
+ \ifx\thecontourlevels\pgfutil@empty
+ mesh:autocontour(\thecontournumber, \pgfplotsmetamin, \pgfplotsmetamax, corners);
+ \else
+ levels = {\thecontourlevels};
+ for n = 1, \#levels do
+ level = tonumber(levels[n]);
+ if level then
+ mesh:contour(level, corners);
+ end;
+ end;
+ \fi
+ io.close(infile);
+ mesh:printcontours();
+ io.close(outfile);
+ },%
+ #1,%
+ },
+ }
+ }
+\else
+ % do not throw the exception at load time ... this library is
+ % included as default
+ \pgfplotsset{
+ contour lua/.code={
+ \pgfplots@error{Library 'contour lua' requires you to run in LUA mode (i.e. lualatex instead of pdflatex)}%
+ }
+ }
+\fi
+
+
+
diff --git a/Master/texmf-dist/tex/generic/pgfplots/lua/prepcontour.lua b/Master/texmf-dist/tex/generic/pgfplots/lua/prepcontour.lua
new file mode 100755
index 00000000000..cfed282c248
--- /dev/null
+++ b/Master/texmf-dist/tex/generic/pgfplots/lua/prepcontour.lua
@@ -0,0 +1,708 @@
+#!/usr/bin/luatex
+
+--[[
+
+prepcontour [Lua variant] - prepare contour lines (for pgfplots)
+
+Version: 1.4 (2021-02-22)
+
+Copyright (C) 2020-2021 Francesco Poli <invernomuto@paranoici.org>
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License along
+with this program; if not, write to the Free Software Foundation, Inc.,
+51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+--]]
+
+-- class creation function
+function FpolyCreateClass()
+ local newclass = {} -- this table is the created class (which will act
+ -- as metatable for the instantiated objects)
+
+ newclass.__index = newclass -- set the __index metamethod (so that
+ -- members missing from objects are searched
+ -- for in the class)
+
+ newclass.new = function (...) -- member function that will be used to
+ -- instantiate a new object of this class
+ local object = setmetatable({}, newclass) -- a table with this class
+ -- set as metatable
+
+ if object.init then
+ object:init(...) -- run the init method, if present
+ end
+
+ return object
+ end
+
+ return newclass
+end
+
+-- class for the coordinates (and meta value) of a point in 3D space
+Coord = FpolyCreateClass()
+
+function Coord:init()
+ self.x = { nil, nil, nil } -- point x,y,z coordinates
+ self.meta = nil -- point meta value
+end
+
+-- class for a 2D mesh of points in 3D space
+PrepcMesh = FpolyCreateClass()
+
+function PrepcMesh:init(yvaries, nblocks, nlines, copylines,
+ input, output)
+ if yvaries then
+ self.ni = nblocks - 1 -- number of cells in the i direction
+ self.nj = nlines - 1 -- number of cells in the j direction
+ else
+ self.ni = nlines - 1 -- number of cells in the i direction
+ self.nj = nblocks - 1 -- number of cells in the j direction
+ end
+ self.st = self.nj + 1 -- stride (number of nodes in the j direction)
+ self.si = self.nj + 1 -- stride for done_i
+ self.sj = self.nj -- stride for done_j
+ local cl = tonumber(copylines) or 0
+ self.is = input or io.stdin
+ self.os = output or io.stdout
+
+ self.debug = false
+
+ local st = self.st -- shorter name
+
+ self.coords = {} -- mesh of nodes
+ -- use single-index table for efficiency
+ -- (i,j) will be mapped to [i*st+j]
+ --[[
+ The mesh of nodes represented by this table is:
+
+ nj o o o o o o o o o o o o
+
+ ^ o o o o o o o o o o o o
+ |
+ 2| o o o o o o o o o o o o
+ |
+ 1| o o o o o o o o o o o o
+ |
+ j=0+ o o o o o o o o o o o o
+
+ +----------------------------->
+ i=0 1 2 ni
+ --]]
+
+ -- copy the first "cl" text lines from self.is to self.os
+ for l = 1, cl do
+ self.os:write(self.is:read('L'))
+ end
+
+ -- read all the nodes
+ for bl = 0, nblocks - 1 do
+ if bl > 0 then
+ self.is:read('L') -- this text line should be empty
+ end
+ for ln = 0, nlines - 1 do
+ if yvaries then
+ i, j = bl, ln
+ else
+ i, j = ln, bl
+ end
+ n = Coord.new()
+ n.x[1], n.x[2], n.x[3], n.meta = self.is:read('n', 'n', 'n', 'n')
+ self.coords[i*st+j] = n
+ end
+ end
+end
+
+
+--[[ begin core of the program logic ]]--
+
+-- build N contour lines between meta_min and meta_max
+function PrepcMesh:autocontour(N, meta_min, meta_max, corners, tolerance)
+ -- subdivide the meta_min÷meta_max interval into N equal sub-intervals
+ -- and pick the midpoints of those sub-intervals
+ meta_min = tonumber(meta_min)
+ meta_max = tonumber(meta_max)
+ local step = (meta_max - meta_min)/N
+ local meta_mid = (meta_max + meta_min)/2
+ local n_mid = (N + 1)/2
+ for n = 1, N do
+ local isoval = meta_mid + (n - n_mid)*step
+ self:contour(isoval, corners, tolerance)
+ end
+end
+
+-- build contour lines for meta==isoval
+function PrepcMesh:contour(isoval, corners, tolerance)
+ -- set relative tolerance
+ local tol = tolerance or 1e-3
+
+ -- short names
+ local st = self.st
+ local si = self.si
+ local sj = self.sj
+
+ -- local variables
+ local i, j
+
+ if self.done_i == nil then
+ self.done_i = {} -- table of markers for i-sides
+ -- again single-index table
+ -- (i,j) will be mapped to [i*si+j]
+ --[[
+ The corresponding i-sides are:
+
+ nj o--o--o--o--o--o--o--o--o--o--o--
+
+ ^ o--o--o--o--o--o--o--o--o--o--o--
+ |
+ 2| o--o--o--o--o--o--o--o--o--o--o--
+ |
+ 1| o--o--o--o--o--o--o--o--o--o--o--
+ |
+ j=0+ o--o--o--o--o--o--o--o--o--o--o--
+
+ +-------------------------->
+ i=0 1 2 ni-1
+ --]]
+ end
+
+ if self.done_j == nil then
+ self.done_j = {} -- table of markers for j-sides
+ -- again single-index table
+ -- (i,j) will be mapped to [i*sj+j]
+ --[[
+ The corresponding j-sides are:
+
+ | | | | | | | | | | | |
+ nj-1 o o o o o o o o o o o o
+ | | | | | | | | | | | |
+ ^ o o o o o o o o o o o o
+ | | | | | | | | | | | | |
+ 1| o o o o o o o o o o o o
+ | | | | | | | | | | | | |
+ j=0+ o o o o o o o o o o o o
+
+ +----------------------------->
+ i=0 1 2 ni
+ --]]
+ end
+
+ if self.newcoords == nil then
+ self.newcoords = {} -- nodes for contour lines will be placed here
+ end
+
+ -- scan all the i-sides, searching for
+ -- intersections with the level surface
+ for i = 0, self.ni - 1 do
+ for j = 0, self.nj do
+ self.done_i[i*si+j] = ((self.coords[ i*st+j].meta > isoval) ==
+ (self.coords[(i+1)*st+j].meta > isoval))
+ --[[
+ This is equivalent to testing the two nodes of the i-side:
+
+ j o-----o
+ i i+1
+
+ If meta > isoval in both nodes, or in none of them, then
+ set done_i to true (never look again at this i-side).
+ Otherwise, set done_i to false (we have not finished with
+ this i-side, since it contains one point of a contour line).
+ --]]
+ end
+ end
+
+ -- scan all the j-sides, searching for
+ -- intersections with the level surface
+ for i = 0, self.ni do
+ for j = 0, self.nj - 1 do
+ self.done_j[i*sj+j] = ((self.coords[i*st+j ].meta > isoval) ==
+ (self.coords[i*st+j+1].meta > isoval))
+ --[[
+ This is equivalent to testing the two nodes of the j-side:
+
+ j+1 o
+ |
+ |
+ j o
+ i
+
+ Similarly, set done_j accordingly...
+ --]]
+ end
+ end
+
+ if self.debug then
+ self:show_sides(isoval)
+ end
+
+ --[[
+ We now have all the sides containing points of the meta==isoval
+ contour lines. We need to connect the points into distinct lines.
+
+ First of all, scan all the boundary sides, searching for sides
+ with done==false. For each boundary side with done==false, set
+ its done to true and build one contour line, starting from
+ the side itself and the real cell adjacent to it.
+
+ How can we specify a cell and one of its sides?
+ We can specify cell (i,j) and a side (South, West, North, East)
+
+ N
+ j o-------o
+ | |
+ W | (i,j) | E
+ | |
+ j-1 o-------o
+ i-1 S i
+ --]]
+
+ j = 0 -- i-sides with j=0
+ for i = 0, self.ni - 1 do
+ if not self.done_i[i*si+j] then
+ self.done_i[i*si+j] = true
+ self:build_line(isoval, tol, i+1, j+1, 'S', corners)
+ if self.debug then
+ self:show_sides(isoval)
+ end
+ end
+ end
+
+ i = 0 -- j-sides with i=0
+ for j = 0, self.nj - 1 do
+ if not self.done_j[i*sj+j] then
+ self.done_j[i*sj+j] = true
+ self:build_line(isoval, tol, i+1, j+1, 'W', corners)
+ if self.debug then
+ self:show_sides(isoval)
+ end
+ end
+ end
+
+ j = self.nj -- i-sides with j=nj
+ for i = 0, self.ni - 1 do
+ if not self.done_i[i*si+j] then
+ self.done_i[i*si+j] = true
+ self:build_line(isoval, tol, i+1, j , 'N', corners)
+ if self.debug then
+ self:show_sides(isoval)
+ end
+ end
+ end
+
+ i = self.ni -- j-sides with i=ni
+ for j = 0, self.nj - 1 do
+ if not self.done_j[i*sj+j] then
+ self.done_j[i*sj+j] = true
+ self:build_line(isoval, tol, i , j+1, 'E', corners)
+ if self.debug then
+ self:show_sides(isoval)
+ end
+ end
+ end
+
+ --[[
+ Finally, scan all the internal sides, again searching for sides
+ with done==false. For each internal side with done==false, do _not_
+ alter its done value and build one contour line, starting from
+ the side itself and one of the two real cells adjacent to it.
+ --]]
+
+ -- i-sides with j=1,...,nj-1 (i-sides with j=0 are already done)
+ -- j-sides with i=1,...,ni-1 (j-sides with i=0 are already done)
+ for j = 0, self.nj - 1 do
+ for i = 0, self.ni - 1 do
+ if not self.done_i[i*si+j] then
+ self:build_line(isoval, tol, i+1, j+1, 'S', corners)
+ if self.debug then
+ self:show_sides(isoval)
+ end
+ end
+ if not self.done_j[i*sj+j] then
+ self:build_line(isoval, tol, i , j+1, 'E', corners)
+ if self.debug then
+ self:show_sides(isoval)
+ end
+ end
+ end
+ end
+end
+
+-- build a single contour line
+function PrepcMesh:build_line(isoval, tol, ic, jc, side, corners)
+ -- short names
+ local st = self.st
+ local si = self.si
+ local sj = self.sj
+
+ -- local variables
+ local ia, ja, na, wa
+ local ib, jb, nb, wb
+ local ie, je, ne
+ local id, jd, nd
+ local pt, k, count, next_side
+ local cc, xi_k, eta_k, ck, above, sign_ck
+ local xi_v, eta_v, xi_0, xi_1, eta_0, eta_1
+ local next_done, next_done_idx
+
+ while true do
+ --[[
+ Start from cell (ic,jc) and its South, West, North, or East side
+
+ e d b d a N b d b
+ o-------o o-------o o-*-----o o-------o
+ | | | | | | | *
+ | c | W | c | | c | | c | E
+ | | * | | | | |
+ o----*--o o-------o o-------o o-------o
+ a S b a e e d e a
+ --]]
+
+ -- find nodes a and b
+ if side == 'E' then ia = ic else ia = ic - 1 end
+ if side == 'N' then ja = jc else ja = jc - 1 end
+ if side == 'W' then ib = ic - 1 else ib = ic end
+ if side == 'S' then jb = jc - 1 else jb = jc end
+ if ia < 0 or ib > self.ni or ja < 0 or jb > self.nj then
+ self.newcoords[#self.newcoords + 1] = Coord.new()
+ break -- out of range: abort
+ end
+ na = self.coords[ia*st+ja] -- node a
+ nb = self.coords[ib*st+jb] -- node b
+
+ -- compute the intersection point between the side
+ -- and the meta==isoval level surface
+ wa = (isoval - nb.meta)/(na.meta - nb.meta) -- weights
+ wb = 1 - wa
+
+ pt = Coord.new()
+ for k = 1, 3 do
+ pt.x[k] = wa*na.x[k] + wb*nb.x[k] -- intersection point
+ end
+ pt.meta = isoval
+ -- add the intersection point to the contour line
+ self.newcoords[#self.newcoords + 1] = pt
+
+ -- check the cell: if it is a phantom cell, then stop
+ if ic < 1 or ic > self.ni or jc < 1 or jc > self.nj then
+ self.newcoords[#self.newcoords + 1] = Coord.new()
+ break -- the contour line is finished
+ end
+
+ -- find nodes e and d
+ if side == 'W' then ie = ic else ie = ic - 1 end
+ if side == 'S' then je = jc else je = jc - 1 end
+ if side == 'E' then id = ic - 1 else id = ic end
+ if side == 'N' then jd = jc - 1 else jd = jc end
+ ne = self.coords[ie*st+je] -- node e
+ nd = self.coords[id*st+jd] -- node d
+
+ -- look at the other three sides of the cell:
+ -- how many of them have done==false ?
+ count = 0
+ if side ~= 'S' and not self.done_i[(ic-1)*si+(jc-1)] then
+ count = count + 1
+ next_side = 'N' -- next side could be the North side of the
+ -- adjacent south cell
+ end
+ if side ~= 'W' and not self.done_j[(ic-1)*sj+(jc-1)] then
+ count = count + 1
+ next_side = 'E' -- next side could be the East side of the
+ -- adjacent west cell
+ end
+ if side ~= 'N' and not self.done_i[(ic-1)*si+ jc ] then
+ count = count + 1
+ next_side = 'S' -- next side could be the South side of the
+ -- adjacent north cell
+ end
+ if side ~= 'E' and not self.done_j[ ic *sj+(jc-1)] then
+ count = count + 1
+ next_side = 'W' -- next side could be the West side of the
+ -- adjacent east cell
+ end
+
+ --[[
+ if zero other sides have done==false, then stop
+
+ o o
+
+
+ o---*-o
+ --]]
+ if count == 0 then
+ self.newcoords[#self.newcoords + 1] = Coord.new()
+ break -- the contour line is finished
+ end
+
+ --[[
+ if exactly one other side has done==false, then
+ next_side already specifies the next side to start from
+
+ o-*---o
+ |
+ \
+ o---*-o
+
+ nothing to be done for the time being...
+ --]]
+
+ --[[
+ the surface inside the cell is thought as the bilinear
+ interpolation of the four nodes and hence mapped onto
+ a unit square in the xi,eta plane:
+
+ eta ^
+ | pt.x[k] = (1-xi)*(1-eta)*na.x[k] +
+ 1+------+ xi *(1-eta)*nb.x[k] +
+ |e d| (1-xi)* eta *ne.x[k] +
+ | | xi * eta *nd.x[k]
+ |a b|
+ 0+------+------>
+ 0 1 xi
+
+ the equation of the contour line is therefore:
+ cc*xi*eta - eta_k*xi - xi_k*eta == ck
+ --]]
+ cc = na.meta - nb.meta + nd.meta - ne.meta
+ eta_k = na.meta - nb.meta
+ xi_k = na.meta - ne.meta
+ ck = isoval - na.meta
+
+ if math.abs(cc) <=
+ math.max(math.abs(tol*eta_k), math.abs(tol*xi_k)) then
+ --[[
+ cc is negligible and the contour line is
+ basically a straight line:
+ eta_k*xi + xi_k*eta + ck == 0
+ --]]
+ cc = 0
+ else
+ --[[
+ cc is non-zero (and non-negligible) and we can divide
+ both sides of the equation by cc:
+ xi*eta - (eta_k/cc)*xi - (xi_k/cc)*eta == ck/cc
+ --]]
+ xi_k = xi_k /cc -- let's rename the coefficients
+ eta_k = eta_k/cc
+ ck = xi_k*eta_k + ck/cc
+ --[[
+ the contour line is an equilateral hyperbola (in the
+ xi,eta plane) with asymptotes xi == xi_k and eta == eta_k
+ and constant product ck:
+ (xi - xi_k)*(eta - eta_k) == ck
+ --]]
+ if math.abs(ck) <= math.abs(tol/2) then
+ --[[
+ ck is negligible and the hyperbola basically
+ degenerates into its asymptotes
+ --]]
+ ck = 0
+ end
+ end
+
+ --[[
+ if two or three other sides have done==false, then
+ choose the next side
+
+ ?
+ o-*---o
+ | * ?
+ ? * |
+ o---*-o
+
+ --]]
+ if count >= 2 then
+ -- how can we choose the next side?
+ --[[
+ if there's more than one side to choose from, cc is
+ necessarily non-zero (a straight line could not cross
+ more than two sides of the unit square) and the
+ center k of the hyperbola is necessarily inside the
+ cell (otherwise one hyperbola branch would be completely
+ outside the cell and the other branch could not cross
+ more than two sides)
+
+ hence, choose the next side by checking the quadrant
+ where the hyperbola branch crossing side a-b lies
+
+ eta ^
+ | :
+ 1+--:---+
+ |e : d|
+ ······+k······
+ |a : b|
+ 0+--:---+------>
+ 0 : 1 xi
+ --]]
+ if ck == 0 then -- math.abs(ck) <= math.abs(tol/2)
+ -- choose side e-d
+ next_side = side
+ elseif ck < 0 then -- ck < -tol/2
+ -- choose side b-d
+ if side == 'N' or side == 'S' then
+ next_side = 'W'
+ else
+ next_side = 'S'
+ end
+ else -- ck > +tol/2
+ -- choose side a-e
+ if side == 'N' or side == 'S' then
+ next_side = 'E'
+ else
+ next_side = 'N'
+ end
+ end
+ end
+
+ if corners then -- enhanced corner algorithm
+
+ --[[
+ if, within the cell, the contour line is not straight
+ we can improve its representation by computing an
+ additional point: the vertex v of the hyperbola branch,
+ as long as it lies inside the cell
+ --]]
+ if cc ~= 0 then
+ -- depending on where the center k is, consider the
+ -- vertex above or below k
+ if eta_k < 0 then above = 1 else above = -1 end
+ -- also check the sign of ck
+ if ck < 0 then sign_ck = -1 else sign_ck = 1 end
+ -- compute the vertex v
+ xi_v = xi_k + sign_ck*above*math.sqrt(math.abs(ck))
+ eta_v = eta_k + above*math.sqrt(math.abs(ck))
+
+ --[[
+ the vertex will be considered inside the cell, as long as
+ xi_0 <= xi_v <= xi_1 and eta_0 <= eta_v <= eta_1
+ --]]
+ xi_0 = - math.abs(tol/10)
+ xi_1 = 1 + math.abs(tol/10)
+ eta_0 = math.abs(tol)
+ eta_1 = 1 + math.abs(tol/10)
+ -- eta_0 is meant to reject a vertex too close to side a-b
+ -- (which already has a contour line point!)
+ -- we should also reject a vertex too close to the next side
+ if next_side == side then
+ -- next side is e-d
+ eta_1 = 1 - math.abs(tol)
+ elseif next_side == 'W' or next_side == 'S' then
+ -- next side is b-d
+ xi_1 = 1 - math.abs(tol)
+ else -- next_side == 'E' or next_side == 'N'
+ -- next side is a-e
+ xi_0 = math.abs(tol)
+ end
+
+ if xi_0 <= xi_v and xi_v <= xi_1 and
+ eta_0 <= eta_v and eta_v <= eta_1 then
+ -- v is inside the cell: compute its actual coordinates
+ pt = Coord.new()
+ for k = 1, 3 do
+ pt.x[k] = (1-xi_v)*(1-eta_v)*na.x[k] +
+ xi_v *(1-eta_v)*nb.x[k] +
+ (1-xi_v)* eta_v *ne.x[k] +
+ xi_v * eta_v *nd.x[k]
+ end
+ pt.meta = isoval
+ -- add the vertex to the contour line
+ self.newcoords[#self.newcoords + 1] = pt
+ end
+ end
+
+ end
+
+ -- point to done value for the next side and
+ -- determine indexes for the next cell
+ -- (the other cell adjacent to the next side)
+ if next_side == 'W' then ic = ic + 1 end
+ if next_side == 'S' then jc = jc + 1 end
+ if next_side == 'N' or next_side == 'S' then
+ next_done = self.done_i
+ next_done_idx = (ic-1)*si+(jc-1)
+ else
+ next_done = self.done_j
+ next_done_idx = (ic-1)*sj+(jc-1)
+ end
+ if next_side == 'E' then ic = ic - 1 end
+ if next_side == 'N' then jc = jc - 1 end
+
+ -- if next side is already done, then stop
+ if next_done[next_done_idx] then
+ self.newcoords[#self.newcoords + 1] = Coord.new()
+ break -- the contour line is finished
+ end
+
+ -- set next side done to true and
+ -- iterate starting from this new side and the next cell
+ next_done[next_done_idx] = true
+ side = next_side
+ end
+end
+
+--[[ end core of the program logic ]]--
+
+
+-- print out all the contour lines
+function PrepcMesh:printcontours()
+ for n = 1, #self.newcoords do
+ if self.newcoords[n].x[1] then
+ self.os:write(string.format("%14.6g%14.6g%14.6g%14.6g\n",
+ self.newcoords[n].x[1],
+ self.newcoords[n].x[2],
+ self.newcoords[n].x[3],
+ self.newcoords[n].meta))
+ else
+ self.os:write('\n')
+ end
+ end
+end
+
+-- print a debug representation of mesh and not-done sides
+function PrepcMesh:show_sides(isoval)
+ -- short names
+ local st = self.st
+ local si = self.si
+ local sj = self.sj
+
+ self.os:write(string.format("# contour level = %.6g \n#\n", isoval))
+ for j = self.nj, 0, -1 do
+ if j <= self.nj - 1 then
+ self.os:write("# ")
+ for i = 0, self.ni do
+ if self.done_j[i*sj+j] then
+ self.os:write(" ")
+ else
+ self.os:write(" *")
+ end
+ end
+ self.os:write("\n")
+ end
+ self.os:write("# ")
+ for i = 0, self.ni do
+ if self.coords[i*st+j].meta > isoval then
+ self.os:write("•")
+ else
+ self.os:write("o")
+ end
+ if i <= self.ni - 1 then
+ if self.done_i[i*si+j] then
+ self.os:write(" ")
+ else
+ self.os:write("*")
+ end
+ end
+ end
+ self.os:write("\n")
+ end
+ self.os:write("#\n")
+end
+
diff --git a/Master/texmf-dist/tex/generic/pgfplots/lua/prepcontour_cli.lua b/Master/texmf-dist/tex/generic/pgfplots/lua/prepcontour_cli.lua
new file mode 100755
index 00000000000..7584228d95c
--- /dev/null
+++ b/Master/texmf-dist/tex/generic/pgfplots/lua/prepcontour_cli.lua
@@ -0,0 +1,97 @@
+#!/usr/bin/luatex
+
+--[[
+
+prepcontour_cli [Lua variant] - prepare contour lines (for pgfplots)
+
+Version: 1.4 (2021-02-22)
+
+Copyright (C) 2020-2021 Francesco Poli <invernomuto@paranoici.org>
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License along
+with this program; if not, write to the Free Software Foundation, Inc.,
+51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+--]]
+
+-- directory separator ('\' for Windows, '/' for all other OSes)
+dsep = package.config:sub(1, 1)
+-- directory where the script lives
+mydir = arg[0]:match("(.*" .. dsep .. ")")
+-- add mydir to the search path for Lua loaders
+package.path = package.path .. ";" .. mydir .. "?.lua"
+-- load the module
+require "prepcontour"
+
+-- main program
+usage = "Usage: " .. arg[0] .. [[
+ CL NB NL {x|y} [VAL]... < IN > OUT
+
+where:
+CL number of text lines to be copied from the input beginning to the output
+NB number of text blocks to be read from the input
+NL number of text lines included in each input block
+x|y ordering ('x' if x varies, 'y' if y varies)
+VAL level for contour lines or
+ min:n:max for n levels between min and max or
+ corners=true to enable enhanced corner algorithm or
+ corners=false to disable it (this is the default initial state)
+IN input file
+OUT output file
+]]
+
+-- simplistic command-line argument parsing
+-- TODO: use a better approach (argparse? some other library?)
+if arg[4] == nil then
+ io.stderr:write(arg[0] .. ": too few arguments\n" .. usage)
+ os.exit(1)
+end
+copylines = tonumber(arg[1])
+nblocks = tonumber(arg[2])
+nlines = tonumber(arg[3])
+if copylines == nil or nblocks == nil or nlines == nil then
+ io.stderr:write(arg[0] .. ": failed to parse arguments\n" .. usage)
+ os.exit(2)
+end
+yvaries = arg[4]:sub(1, 1)
+if yvaries ~= 'x' and yvaries ~= 'y' then
+ io.stderr:write(arg[0] .. ": failed to parse argument '"
+ .. arg[4] .. "'!\n" .. usage)
+ os.exit(3)
+end
+yvaries = (yvaries == 'y')
+
+mesh = PrepcMesh.new(yvaries, nblocks, nlines, copylines)
+corners = false
+for n = 5, #arg do
+ if arg[n] == 'corners=true' then
+ corners = true
+ elseif arg[n] == 'corners=false' then
+ corners = false
+ else
+ level = tonumber(arg[n])
+ if level then
+ mesh:contour(level, corners)
+ else
+ lmin, nlevels, lmax = arg[n]:match('([^%:]+)%:([^%:]+)%:([^%:]+)')
+ nlevels = math.tointeger(tonumber(nlevels))
+ lmin = tonumber(lmin)
+ lmax = tonumber(lmax)
+ if nlevels and lmin and lmax then
+ mesh:autocontour(nlevels, lmin, lmax, corners)
+ end
+ end
+ end
+end
+
+mesh:printcontours()
diff --git a/Master/texmf-dist/tex/generic/pgfplots/numtable/pgfplotstable.code.tex b/Master/texmf-dist/tex/generic/pgfplots/numtable/pgfplotstable.code.tex
index c169f730d42..f8f28883059 100644
--- a/Master/texmf-dist/tex/generic/pgfplots/numtable/pgfplotstable.code.tex
+++ b/Master/texmf-dist/tex/generic/pgfplots/numtable/pgfplotstable.code.tex
@@ -675,6 +675,10 @@
/pgfplots/table/create col/linear regression/variance/.initial=,%
/pgfplots/table/create col/linear regression/variance list/.initial=,%
/pgfplots/table/create col/linear regression/variance src/.initial=,%
+ /pgfplots/table/create col/linear regression/variance format/.is choice,%
+ /pgfplots/table/create col/linear regression/variance format/linear/.code={\def\pgfplotstable@regression@variance@format{l}},%
+ /pgfplots/table/create col/linear regression/variance format/log/.code={\def\pgfplotstable@regression@variance@format{m}},%
+ /pgfplots/table/create col/linear regression/variance format/log,%
/pgfplots/table/create col/linear regression/xmode/.initial=,% auto
/pgfplots/table/create col/linear regression/ymode/.initial=,% auto
/pgfplots/table/create col/quotient/.style={%
@@ -2789,48 +2793,83 @@
\pgfplotslistpopfront\pgfplotstable@X\to\pgfplotstable@x
\pgfplotslistpopfront\pgfplotstable@Y\to\pgfplotstable@y
%
- \pgfplotstableparsex{\pgfplotstable@x}%
- \let\pgfplotstable@x=\pgfmathresult
- \expandafter\pgfplotslistpushback\pgfmathresult\to\pgfplotstable@Xparsed
- \pgfplotstableparsey{\pgfplotstable@y}%
- \let\pgfplotstable@y=\pgfmathresult
- %
- \pgfplotslistcheckempty\pgfplotstable@VARIANCE
- \ifpgfplotslistempty
- \pgfmathfloatcreate{1}{1.0}{0}%
- \let\pgfplotstable@invsqr=\pgfmathresult
+ % if either the x or y entry is empty, skip this point
+ \ifx\pgfplotstable@x\pgfutil@empty
+ \else\ifx\pgfplotstable@y\pgfutil@empty
\else
- \pgfplotslistpopfront\pgfplotstable@VARIANCE\to\pgfplotstable@variance
- \pgfmathfloatparsenumber{\pgfplotstable@variance}%
- \let\pgfplotstable@variance=\pgfmathresult
+ \pgfplotstableparsex{\pgfplotstable@x}%
+ \let\pgfplotstable@x=\pgfmathresult
+ \expandafter\pgfplotslistpushback\pgfmathresult\to\pgfplotstable@Xparsed
+ \pgfplotstableparsey{\pgfplotstable@y}%
+ \let\pgfplotstable@y=\pgfmathresult
+ %
+ \pgfplotslistcheckempty\pgfplotstable@VARIANCE
+ \ifpgfplotslistempty
+ \pgfmathfloatcreate{1}{1.0}{0}%
+ \let\pgfplotstable@variance=\pgfmathresult
+ \else
+ \pgfplotslistpopfront\pgfplotstable@VARIANCE\to\pgfplotstable@variance
+ \pgfmathfloatparsenumber{\pgfplotstable@variance}%
+ \let\pgfplotstable@variance=\pgfmathresult
+ \fi
+ %
+ % if we're in y log mode, then instead of y +- dy, we have log_b(y +- dy)
+ % which Taylor expands to log_b(y) +- dy/(y ln(b)) + O(dy^2)
+ % However, this might introduce a division-by-zero in the exceptional case
+ % where b=1 or log_b(0) = -infinity, so instead of computing 1/(dy/(y ln b))^2
+ % we will compute (y ln b)^2*1/dy^2. Note that we don't factor out the ^2
+ % because floating point operations don't commute and the historical behavior
+ % was to compute 1/dy^2.
+ %
\pgfmathfloatmultiply@{\pgfplotstable@variance}{\pgfplotstable@variance}%
\let\pgfplotstable@sqr=\pgfmathresult
\pgfmathfloatreciprocal@{\pgfplotstable@sqr}%
\let\pgfplotstable@invsqr=\pgfmathresult
- \fi
- %
- \pgfmathfloatadd@{\pgfplotstable@S}{\pgfplotstable@invsqr}%
- \let\pgfplotstable@S=\pgfmathresult
- %
- \pgfmathfloatmultiply@{\pgfplotstable@x}{\pgfplotstable@invsqr}%
- \let\pgfplots@table@accum=\pgfmathresult
- \pgfmathfloatadd@{\pgfplotstable@Sx}{\pgfplots@table@accum}%
- \let\pgfplotstable@Sx=\pgfmathresult
- %
- \pgfmathfloatmultiply@{\pgfplotstable@x}{\pgfplots@table@accum}%
- \let\pgfplots@table@accum=\pgfmathresult
- \pgfmathfloatadd@{\pgfplotstable@Sxx}{\pgfplots@table@accum}%
- \let\pgfplotstable@Sxx=\pgfmathresult
- %
- \pgfmathfloatmultiply@{\pgfplotstable@y}{\pgfplotstable@invsqr}%
- \let\pgfplots@table@accum=\pgfmathresult
- \pgfmathfloatadd@{\pgfplotstable@Sy}{\pgfplots@table@accum}%
- \let\pgfplotstable@Sy=\pgfmathresult
- %
- \pgfmathfloatmultiply@{\pgfplotstable@x}{\pgfplots@table@accum}%
- \let\pgfplots@table@accum=\pgfmathresult
- \pgfmathfloatadd@{\pgfplotstable@Sxy}{\pgfplots@table@accum}%
- \let\pgfplotstable@Sxy=\pgfmathresult
+ \ifx\pgfplotstableparseylogbase\pgfutil@empty
+ \else
+ \if m\pgfplotstable@regression@variance@format
+ % variance format=log
+ \else
+ % variance format=linear
+ % N.B. at this point, \pgfplotstable@invsqr, \pgfplotstable@sqr, and \pgfplotstable@variance are
+ % all missing log-scaling. We update \pgfplotstable@invsqr now, but leave \pgfplotstable@sqr
+ % and \pgfplotstable@variance alone because they are not used below this point.
+ \pgfplotstableparseyinv@{\pgfplotstable@y}% y
+ \let\pgfplotstable@tmp=\pgfmathresult
+ \pgfmathfloatmultiply@{\pgfplotstable@tmp}{\pgfplotstableparseylogofbasefloat}% y * ln(b)
+ \let\pgfplotstable@ylnb=\pgfmathresult
+ \pgfmathfloatmultiply@{\pgfplotstable@ylnb}{\pgfplotstable@ylnb}% (y * ln(b))^2
+ \let\pgfplotstable@ylnbsqr=\pgfmathresult
+ % since \pgfplotstable@invsqr is used, but \pgfplotstable@sqr and \pgfplotstable@variance are not
+ % we only need to update \pgfplotstable@invsqr
+ \pgfmathfloatmultiply@{\pgfplotstable@invsqr}{\pgfplotstable@ylnbsqr}% (y * ln(b))^2 / dy^2
+ \let\pgfplotstable@invsqr=\pgfmathresult
+ \fi
+ \fi
+ %
+ \pgfmathfloatadd@{\pgfplotstable@S}{\pgfplotstable@invsqr}%
+ \let\pgfplotstable@S=\pgfmathresult
+ %
+ \pgfmathfloatmultiply@{\pgfplotstable@x}{\pgfplotstable@invsqr}%
+ \let\pgfplots@table@accum=\pgfmathresult
+ \pgfmathfloatadd@{\pgfplotstable@Sx}{\pgfplots@table@accum}%
+ \let\pgfplotstable@Sx=\pgfmathresult
+ %
+ \pgfmathfloatmultiply@{\pgfplotstable@x}{\pgfplots@table@accum}%
+ \let\pgfplots@table@accum=\pgfmathresult
+ \pgfmathfloatadd@{\pgfplotstable@Sxx}{\pgfplots@table@accum}%
+ \let\pgfplotstable@Sxx=\pgfmathresult
+ %
+ \pgfmathfloatmultiply@{\pgfplotstable@y}{\pgfplotstable@invsqr}%
+ \let\pgfplots@table@accum=\pgfmathresult
+ \pgfmathfloatadd@{\pgfplotstable@Sy}{\pgfplots@table@accum}%
+ \let\pgfplotstable@Sy=\pgfmathresult
+ %
+ \pgfmathfloatmultiply@{\pgfplotstable@x}{\pgfplots@table@accum}%
+ \let\pgfplots@table@accum=\pgfmathresult
+ \pgfmathfloatadd@{\pgfplotstable@Sxy}{\pgfplots@table@accum}%
+ \let\pgfplotstable@Sxy=\pgfmathresult
+ \fi\fi
\pgfutil@repeat
%
\pgfmathparse{\pgfplotstable@S * \pgfplotstable@Sxx - \pgfplotstable@Sx *\pgfplotstable@Sx}%
diff --git a/Master/texmf-dist/tex/generic/pgfplots/pgfcontrib/tikzlibrarydecorations.softclip.code.tex b/Master/texmf-dist/tex/generic/pgfplots/pgfcontrib/tikzlibrarydecorations.softclip.code.tex
index 7544d66d313..3b604760ca6 100644
--- a/Master/texmf-dist/tex/generic/pgfplots/pgfcontrib/tikzlibrarydecorations.softclip.code.tex
+++ b/Master/texmf-dist/tex/generic/pgfplots/pgfcontrib/tikzlibrarydecorations.softclip.code.tex
@@ -433,6 +433,8 @@
}
\def\tikzlibsoftclip@setkey@@{%
+ \edef\tikzlibsoftclip@setkey@@reset{\noexpand\tikz@expandcount=\the\tikz@expandcount\relax}%
+ \tikz@resetexpandcount
%
\tikz@scan@one@point\tikzlibsoftclip@setkey@bb@scan@a
}%
@@ -455,6 +457,7 @@
\def\tikzlibsoftclip@setkey@bb@scan@b#1{%
\def\tikzlibsoftclip@setkey@bb@b{#1}%
\pgfutil@ifnextchar \pgf@stop{%
+ \tikzlibsoftclip@setkey@@reset
\tikzlibsoftclip@setkey@@activate
\tikz@gobble@until@stop
}{%
diff --git a/Master/texmf-dist/tex/generic/pgfplots/pgfplots.code.tex b/Master/texmf-dist/tex/generic/pgfplots/pgfplots.code.tex
index 6b5b8b808da..b02206937e7 100644
--- a/Master/texmf-dist/tex/generic/pgfplots/pgfplots.code.tex
+++ b/Master/texmf-dist/tex/generic/pgfplots/pgfplots.code.tex
@@ -45,6 +45,7 @@
\usetikzlibrary{decorations,decorations.pathmorphing,decorations.pathreplacing}
+\usepgfplotslibrary{contourlua}%
% FIXME: reduce number of variables!
@@ -4318,8 +4319,10 @@
/pgfplots/compat/anchors/1.15/.style= {/pgfplots/compat/anchors/1.13},%
/pgfplots/compat/anchors/1.16/.style= {/pgfplots/compat/anchors/1.13},%
/pgfplots/compat/anchors/1.17/.style= {/pgfplots/compat/anchors/1.13},%
+ /pgfplots/compat/anchors/1.18/.style= {/pgfplots/compat/anchors/1.13},%
/pgfplots/compat/anchors/default/.style={/pgfplots/compat/anchors/1.3},%
%
+ %
/pgfplots/compat/empty line/.is choice,
/pgfplots/compat/empty line/pre 1.3/.code={\pgfplots@emptyline@compattrue},% FIXME: WAS \global
/pgfplots/compat/empty line/1.3/.style= {/pgfplots/compat/empty line/pre 1.3},%
@@ -4338,6 +4341,7 @@
/pgfplots/compat/empty line/1.15/.style= {/pgfplots/compat/empty line/1.4},%
/pgfplots/compat/empty line/1.16/.style= {/pgfplots/compat/empty line/1.4},%
/pgfplots/compat/empty line/1.17/.style= {/pgfplots/compat/empty line/1.4},%
+ /pgfplots/compat/empty line/1.18/.style= {/pgfplots/compat/empty line/1.4},%
/pgfplots/compat/empty line/default/.style= {/pgfplots/compat/empty line/1.4},%
%
/pgfplots/compat/path replacement/.is choice,
@@ -4358,6 +4362,7 @@
/pgfplots/compat/path replacement/1.15/.style= {/pgfplots/compat/path replacement/1.5.1},
/pgfplots/compat/path replacement/1.16/.style= {/pgfplots/compat/path replacement/1.5.1},
/pgfplots/compat/path replacement/1.17/.style= {/pgfplots/compat/path replacement/1.5.1},
+ /pgfplots/compat/path replacement/1.18/.style= {/pgfplots/compat/path replacement/1.5.1},
/pgfplots/compat/path replacement/default/.style= {/pgfplots/compat/path replacement/pre 1.3},%
%
/pgfplots/compat/pgfpoint substitution/.is choice,
@@ -4378,6 +4383,7 @@
/pgfplots/compat/pgfpoint substitution/1.15/.style= {/pgfplots/compat/pgfpoint substitution/1.11},
/pgfplots/compat/pgfpoint substitution/1.16/.style= {/pgfplots/compat/pgfpoint substitution/1.11},
/pgfplots/compat/pgfpoint substitution/1.17/.style= {/pgfplots/compat/pgfpoint substitution/1.11},
+ /pgfplots/compat/pgfpoint substitution/1.18/.style= {/pgfplots/compat/pgfpoint substitution/1.11},
/pgfplots/compat/pgfpoint substitution/default/.style= {/pgfplots/compat/pgfpoint substitution/pre 1.3},%
%ellipse/.is if=pgfplots@path@replace@ellipse,
%
@@ -4408,6 +4414,7 @@
/pgfplots/compat/labels/1.15/.style= {/pgfplots/compat/labels/1.8},%
/pgfplots/compat/labels/1.16/.style= {/pgfplots/compat/labels/1.8},%
/pgfplots/compat/labels/1.17/.style= {/pgfplots/compat/labels/1.8},%
+ /pgfplots/compat/labels/1.18/.style= {/pgfplots/compat/labels/1.8},%
/pgfplots/compat/labels/default/.style= {/pgfplots/compat/labels/pre 1.3},% maintain backwards compatibility
%
/pgfplots/compat/bar nodes/.is choice,
@@ -4463,6 +4470,7 @@
/pgfplots/compat/bar nodes/1.15/.style= {/pgfplots/compat/bar nodes/1.13},%
/pgfplots/compat/bar nodes/1.16/.style= {/pgfplots/compat/bar nodes/1.13},%
/pgfplots/compat/bar nodes/1.17/.style= {/pgfplots/compat/bar nodes/1.13},%
+ /pgfplots/compat/bar nodes/1.18/.style= {/pgfplots/compat/bar nodes/1.13},%
/pgfplots/compat/bar nodes/default/.style= {/pgfplots/compat/bar nodes/pre 1.3},% maintain backwards compatibility
/pgfplots/compat/bar nodes/default,
%
@@ -4498,6 +4506,7 @@
/pgfplots/compat/scaling/1.15/.style={/pgfplots/compat/scaling/1.6},
/pgfplots/compat/scaling/1.16/.style={/pgfplots/compat/scaling/1.6},
/pgfplots/compat/scaling/1.17/.style={/pgfplots/compat/scaling/1.6},
+ /pgfplots/compat/scaling/1.18/.style={/pgfplots/compat/scaling/1.6},
/pgfplots/compat/scaling/default/.style={/pgfplots/compat/scaling/1.4},
%
/pgfplots/compat/scale mode/.is choice,
@@ -4518,6 +4527,7 @@
/pgfplots/compat/scale mode/1.15/.style={/pgfplots/compat/scale mode/1.6},
/pgfplots/compat/scale mode/1.16/.style={/pgfplots/compat/scale mode/1.6},
/pgfplots/compat/scale mode/1.17/.style={/pgfplots/compat/scale mode/1.6},
+ /pgfplots/compat/scale mode/1.18/.style={/pgfplots/compat/scale mode/1.6},
/pgfplots/compat/scale mode/default/.style={/pgfplots/compat/scale mode/1.5},
%
%
@@ -4539,6 +4549,7 @@
/pgfplots/compat/plot3graphics/1.15/.style= {/pgfplots/compat/plot3graphics/1.6},%
/pgfplots/compat/plot3graphics/1.16/.style= {/pgfplots/compat/plot3graphics/1.6},%
/pgfplots/compat/plot3graphics/1.17/.style= {/pgfplots/compat/plot3graphics/1.6},%
+ /pgfplots/compat/plot3graphics/1.18/.style= {/pgfplots/compat/plot3graphics/1.6},%
/pgfplots/compat/plot3graphics/default/.style= {/pgfplots/compat/plot3graphics/1.5},%
%
% ATTENTION: there is a compatibility issue which slipped through
@@ -4586,6 +4597,7 @@
/pgfplots/compat/bar width by units/1.15/.style= {/pgfplots/compat/bar width by units/1.7},
/pgfplots/compat/bar width by units/1.16/.style= {/pgfplots/compat/bar width by units/1.7},
/pgfplots/compat/bar width by units/1.17/.style= {/pgfplots/compat/bar width by units/1.7},
+ /pgfplots/compat/bar width by units/1.18/.style= {/pgfplots/compat/bar width by units/1.7},
/pgfplots/compat/bar width by units/default/.style={/pgfplots/compat/bar width by units/pre 1.3},
%
/pgfplots/compat/BB/.is choice,
@@ -4606,6 +4618,7 @@
/pgfplots/compat/BB/1.15/.style= {/pgfplots/compat/BB/1.8},%
/pgfplots/compat/BB/1.16/.style= {/pgfplots/compat/BB/1.8},%
/pgfplots/compat/BB/1.17/.style= {/pgfplots/compat/BB/1.8},%
+ /pgfplots/compat/BB/1.18/.style= {/pgfplots/compat/BB/1.8},%
/pgfplots/compat/BB/default/.style={/pgfplots/compat/BB/pre 1.3},
%
/pgfplots/compat/general/.is choice,
@@ -4670,6 +4683,7 @@
/pgfplots/compat/general/1.15,
%/pgfplots/table/percent is letter=true,
},%
+ /pgfplots/compat/general/1.18/.style= {/pgfplots/compat/general/1.17},%
/pgfplots/compat/general/default/.style={/pgfplots/compat/general/1.11},
%
/pgfplots/enable tick line clipping/.is if=pgfplots@enable@tick@line@clipping,
@@ -4687,7 +4701,7 @@
/pgfplots/compat/show suggested version/.is if=pgfplots@show@suggested@version,
/pgfplots/compat/show suggested version=true,
/pgfplots/compat/current/.initial=,
- /pgfplots/compat/mostrecent/.initial=1.17,
+ /pgfplots/compat/mostrecent/.initial=1.18,
/utils/exec={%
\pgfplotsutilforeachcommasep{%
/pgfplots/compat/current,%
@@ -7925,13 +7939,13 @@
{\csname pgfplots@environment@#2axis@\endcsname[]}%
}%
\expandafter\long\expandafter\def\csname pgfplots@environment@#2axis@\endcsname[##1]{%
- \begin{axis}[%
+ \axis[%
##1,%
data cs=#1,% assume that coordinates provided by \addplot are in the correct coordsystem
axis type=#2% active the correct axis type
]%
}%
- \expandafter\def\csname endpgfplots@environment@#2axis\endcsname{\end{axis}}%
+ \expandafter\def\csname endpgfplots@environment@#2axis\endcsname{\endaxis}%
\edef\pgfplots@glob@TMPc{\expandafter\noexpand\csname #2axis\endcsname\expandafter\noexpand\csname pgfplots@environment@#2axis\endcsname}%
\expandafter
\tikzaddtikzonlycommandshortcutlet\pgfplots@glob@TMPc
@@ -11571,7 +11585,7 @@
\pgfplotsutil@directlua{%
pgfplots.gca = pgfplots.Axis.new();
pgfplots.gca.is3d = \pgfplots@boolval{pgfplots@threedim};
- pgfplots.gca.clipLimits = {
+ pgfplots.gca.clipLimits = {
\pgfplots@boolval{pgfplots@clip@limits@x},
\pgfplots@boolval{pgfplots@clip@limits@y},
\pgfplots@boolval{pgfplots@clip@limits@z} };
diff --git a/Master/texmf-dist/tex/generic/pgfplots/pgfplots.revision.tex b/Master/texmf-dist/tex/generic/pgfplots/pgfplots.revision.tex
index 2bf436fe808..be95dfac86a 100644
--- a/Master/texmf-dist/tex/generic/pgfplots/pgfplots.revision.tex
+++ b/Master/texmf-dist/tex/generic/pgfplots/pgfplots.revision.tex
@@ -5,10 +5,10 @@
\catcode`\:=12
\catcode`\+=12
\catcode`\-=12
-\gdef\pgfplotsrevision{1.17}
-\gdef\pgfplotsversion{1.17}
-\gdef\pgfplotsversiondatetime{2020-02-29 09:43:25 +0100}
-\gdef\pgfplotsrevisiondatetime{2020-02-29 09:43:25 +0100}
+\gdef\pgfplotsrevision{1.18}
+\gdef\pgfplotsversion{1.18}
+\gdef\pgfplotsversiondatetime{2021-05-08 12:48:32 +0200}
+\gdef\pgfplotsrevisiondatetime{2021-05-08 12:48:32 +0200}
\gdef\pgfplots@glob@TMPa#1-#2-#3 #4\relax{#1/#2/#3}
\xdef\pgfplotsversiondate{\expandafter\pgfplots@glob@TMPa\pgfplotsversiondatetime\relax}
\xdef\pgfplotsrevisiondate{\expandafter\pgfplots@glob@TMPa\pgfplotsrevisiondatetime\relax}
diff --git a/Master/texmf-dist/tex/generic/pgfplots/pgfplotsmeshplotimage.code.tex b/Master/texmf-dist/tex/generic/pgfplots/pgfplotsmeshplotimage.code.tex
index b5a51cd3b2a..3b5115bf9a2 100644
--- a/Master/texmf-dist/tex/generic/pgfplots/pgfplotsmeshplotimage.code.tex
+++ b/Master/texmf-dist/tex/generic/pgfplots/pgfplotsmeshplotimage.code.tex
@@ -106,7 +106,10 @@
\else
\ifx\pgfplotsplothandlermesh@image@lastA\pgfutil@empty
\else
- \pgfplotscoordmath{x}{parse}{\pgfplotsplothandlermesh@image@lastA - 0.5*(\pgfplotsplothandlermesh@cur - \pgfplotsplothandlermesh@image@lastA)}%
+ \pgfplotscoordmath{\pgfplotsplothandlermesh@image@A@dir}{parse}{\pgfplotsplothandlermesh@image@lastA - 0.5*(\pgfplotsplothandlermesh@cur - \pgfplotsplothandlermesh@image@lastA)}%
+ \pgfplots@if{pgfplots@\pgfplotsplothandlermesh@image@A@dir islinear}{}{%
+ \pgfplotscoordmath{\pgfplotsplothandlermesh@image@A@dir}{parsenumber}{\pgfmathresult}%
+ }
\let\pgfplots@current@point@xh=\pgfmathresult
\pgfplotsplothandlermesh@image@updatelimits@AB\pgfplots@current@point@xh\pgfplotsplothandlermesh@cur@B\pgfplots@current@point@z
%
@@ -120,12 +123,18 @@
\else
\ifx\pgfplotsplothandlermesh@image@lastB\pgfutil@empty
\else
- \pgfplotscoordmath{y}{parse}{\pgfplotsplothandlermesh@image@lastB - 0.5*(\pgfplotsplothandlermesh@cur@B - \pgfplotsplothandlermesh@image@lastB)}%
+ \pgfplotscoordmath{\pgfplotsplothandlermesh@image@B@dir}{parse}{\pgfplotsplothandlermesh@image@lastB - 0.5*(\pgfplotsplothandlermesh@cur@B - \pgfplotsplothandlermesh@image@lastB)}%
+ \pgfplots@if{pgfplots@\pgfplotsplothandlermesh@image@B@dir islinear}{}{%
+ \pgfplotscoordmath{\pgfplotsplothandlermesh@image@B@dir}{parsenumber}{\pgfmathresult}%
+ }
\let\pgfplots@current@point@yh=\pgfmathresult
\pgfplotsplothandlermesh@image@updatelimits@AB\pgfplotsplothandlermesh@cur\pgfplots@current@point@yh\pgfplots@current@point@z
%
%
- \pgfplotscoordmath{y}{parse}{\pgfplotsplothandlermesh@cur@B + 0.5*(\pgfplotsplothandlermesh@cur@B - \pgfplotsplothandlermesh@image@lastB)}%
+ \pgfplotscoordmath{\pgfplotsplothandlermesh@image@B@dir}{parse}{\pgfplotsplothandlermesh@cur@B + 0.5*(\pgfplotsplothandlermesh@cur@B - \pgfplotsplothandlermesh@image@lastB)}%
+ \pgfplots@if{pgfplots@\pgfplotsplothandlermesh@image@B@dir islinear}{}{%
+ \pgfplotscoordmath{\pgfplotsplothandlermesh@image@B@dir}{parsenumber}{\pgfmathresult}%
+ }
\let\pgfplots@current@point@yh=\pgfmathresult
\pgfplotsplothandlermesh@image@updatelimits@AB\pgfplotsplothandlermesh@cur\pgfplots@current@point@yh\pgfplots@current@point@z
%
@@ -145,7 +154,10 @@
\ifx\pgfplotsplothandlermesh@image@lastA\pgfutil@empty
\else
\expandafter\let\expandafter\pgfplotsplothandlermesh@cur@B\csname pgfplots@current@point@\pgfplotsplothandlermesh@image@B@dir\endcsname
- \pgfplotscoordmath{x}{parse}{\pgfplotsplothandlermesh@image@lastA + 0.5*(\pgfplotsplothandlermesh@image@lastA - \pgfplotsplothandlermesh@image@lastlastA)}%
+ \pgfplotscoordmath{\pgfplotsplothandlermesh@image@A@dir}{parse}{\pgfplotsplothandlermesh@image@lastA + 0.5*(\pgfplotsplothandlermesh@image@lastA - \pgfplotsplothandlermesh@image@lastlastA)}%
+ \pgfplots@if{pgfplots@\pgfplotsplothandlermesh@image@A@dir islinear}{}{%
+ \pgfplotscoordmath{\pgfplotsplothandlermesh@image@A@dir}{parsenumber}{\pgfmathresult}%
+ }
\let\pgfplots@current@point@xh=\pgfmathresult
\pgfplotsplothandlermesh@image@updatelimits@AB\pgfplots@current@point@xh\pgfplotsplothandlermesh@cur@B\pgfplots@current@point@z
\fi
diff --git a/Master/texmf-dist/tex/generic/pgfplots/pgfplotsplothandlers.code.tex b/Master/texmf-dist/tex/generic/pgfplots/pgfplotsplothandlers.code.tex
index bad6354b2f3..4f138c8077e 100644
--- a/Master/texmf-dist/tex/generic/pgfplots/pgfplotsplothandlers.code.tex
+++ b/Master/texmf-dist/tex/generic/pgfplots/pgfplotsplothandlers.code.tex
@@ -1952,6 +1952,7 @@
\newif\ifpgfplotsplothandlercontour@labels
\newif\ifpgfplotsplothandlercontour@filled
+\newif\ifpgfplotsplothandlercontour@corners
\def\pgfplotsplothandlercontour@axis@set@inverse#1#2#3#4{%
\pgfplotsutilifstringequal{#1}{#4}{%
@@ -2041,6 +2042,8 @@
contour/contour label style/.style={
/pgfplots/contour/every contour label/.append style={#1}},
%
+ contour/corners/.is if=pgfplotsplothandlercontour@corners,
+ contour/corners=false,
%
% Styles to actually *compute* the contour.
% These are mostly placeholders here: As long as the
@@ -2090,6 +2093,16 @@
contour external/script extension/.initial=script,
contour external/script/.initial=,% not yet initialised
contour external/cmd/.initial=,% not yet initialised
+ contour external/script type/.is choice=,%
+ contour external/script type/system call/.code={\def\pgfplotsplothandlercontourexternal@script@type{S}},%
+ contour external/script type/lua/.code={\def\pgfplotsplothandlercontourexternal@script@type{L}\pgfkeyssetvalue{/pgfplots/contour external/script extension}{lua}},%
+ contour external/script type/system call,%
+ contour external/script input format/.is choice,%
+ contour external/script input format/x y meta meta/.code={\def\pgfplotsplothandlercontourexternal@script@input@format{M}},%
+ contour external/script input format/x y z meta/.code={\def\pgfplotsplothandlercontourexternal@script@input@format{Z}},%
+ contour external/script input format=x y meta meta,%
+ contour external/@before cmd/.initial=,
+ contour external/@after cmd/.initial=,
contour external/.search also=/pgfplots/contour,
contour gnuplot/.style={
contour external={%
@@ -2684,6 +2697,7 @@
\else
\pgfplotsset{plot to file/scanline marks/if in input}% the choice 'always' is unaware of existing end-of-scanline marks
\fi
+ %
\pgfplotsplothandlertofile{\pgfplotsplothandlercontourexternal@file.dat}%
\pgfplotsplothandlersurveystart
\let\pgfplotsplothandlersurveypoint@tofile=\pgfplotsplothandlersurveypoint
@@ -2694,6 +2708,10 @@
\pgfplotsplothandlersurveypoint@contour@prepare@axes x%
\pgfplotsplothandlersurveypoint@contour@prepare@axes y%
\pgfplotsplothandlersurveypoint@contour@prepare@axes z%
+ %
+ \global\let\pgfplotsplothandlercontourexternal@metamin=\relax
+ \global\let\pgfplotsplothandlercontourexternal@metamax=\relax
+ %
}%
% #1: either x, y, or z
@@ -2745,22 +2763,39 @@
}%
\def\pgfplotsplothandlersurveypoint@contourexternal{%
- % temporarily disable updates to point meta limits. They should be
- % updated during the contour prepared processing.
- \let\pgfplotsplothandlercontourexternal@orig@perpointlimits@limits=\pgfplots@set@perpointmeta@limits
- \let\pgfplots@set@perpointmeta@limits=\relax
+ \ifx\pgfplotsplothandlercontourexternal@metamin\relax
+ % remember values. We want to restore them right before we parse the output of contour external:
+ \global\let\pgfplotsplothandlercontourexternal@metamin=\pgfplots@metamin
+ \global\let\pgfplotsplothandlercontourexternal@metamax=\pgfplots@metamax
+ \fi
+ \pgfplotsplothandlersurveypoint@contour@axes@std@to@reordered
%
\pgfplotsaxissurveysetpointmeta
- \let\pgfplots@current@point@z=\pgfplots@current@point@meta
%
- \let\pgfplots@set@perpointmeta@limits=\pgfplotsplothandlercontourexternal@orig@perpointlimits@limits
+ \if M\pgfplotsplothandlercontourexternal@script@input@format
+ \let\pgfplots@current@point@z=\pgfplots@current@point@meta
+ \fi
%
- \pgfplotsplothandlersurveypoint@contour@axes@std@to@reordered
%
-%\message{contour gnuplot: collecting point (\pgfplots@current@point@x,\pgfplots@current@point@y,\pgfplots@current@point@z) [\pgfplots@current@point@meta]...}%
+%\message{contour external collecting point (\pgfplots@current@point@x,\pgfplots@current@point@y,\pgfplots@current@point@z) [\pgfplots@current@point@meta]...}%
\pgfplotsplothandlersurveypoint@tofile
}%
+% Utility function which is NOT normally invoked. It can be invoked inside of 'contour external/@before cmd'. Should it become the default?
+\def\pgfplotscontourpopulateallkeys{%
+ \pgfkeysgetvalue{/pgfplots/contour/levels}\pgfplots@loc@TMPa
+ \ifx\pgfplots@loc@TMPa\pgfutil@empty
+ \ifx\pgfplots@metamax\pgfutil@empty
+ \else
+ \edef\pgfplots@loc@TMPa{\pgfplots@metamin:\pgfplots@metamax}%
+ \edef\thecontournumber{\pgfkeysvalueof{/pgfplots/contour/number}}%
+ \expandafter\pgfplots@domain@to@foreach\pgfplots@loc@TMPa\relax{\thecontournumber}%
+ \expandafter\pgfplots@foreach@to@list@macro\expandafter{\pgfplotsretval}%
+ \pgfkeyslet{/pgfplots/contour/levels}\pgfplotsretval
+ \fi
+ \fi
+}%
+
{
\catcode`\`=12
\catcode`\'=12
@@ -2777,6 +2812,7 @@
\fi
\fi
%
+ \pgfkeysvalueof{/pgfplots/contour external/@before cmd}\relax%
\begingroup
\let\numcoords=\pgfplots@current@point@coordindex%
\pgfplotsautocompletemeshkeys
@@ -2790,16 +2826,46 @@
\edef\ordering{\pgfplots@plot@mesh@ordering}%
\edef\infile{\pgfplotsplothandlercontourexternal@file.dat}%
\edef\outfile{\pgfplotsplothandlercontourexternal@file.table}%
- \edef\script{\pgfplotsplothandlercontourexternal@file.\pgfkeysvalueof{/pgfplots/contour external/script extension}}%
+ %
+ \pgfkeysgetvalue{/pgfplots/contour external/cmd}\cmd
+ \pgfkeysgetvalue{/pgfplots/contour external/script extension}\scriptext
+ \if S\pgfplotsplothandlercontourexternal@script@type
+ \else
+ % script type=lua
+ \ifx\cmd\pgfutil@empty
+ \pgfkeyssetvalue{/pgfplots/contour external/cmd}{require(\"\scriptbase\")}%
+ \pgfkeysgetvalue{/pgfplots/contour external/cmd}\cmd
+ \fi
+ \fi
+ %
+ \pgfplotscoordmath{meta}{tofixed}{\pgfplots@metamin}%
+ \let\pgfplotsmetamin=\pgfmathresult
+ \pgfplotscoordmath{meta}{tofixed}{\pgfplots@metamax}%
+ \let\pgfplotsmetamax=\pgfmathresult
+ %
+ \edef\script{\pgfplotsplothandlercontourexternal@file.\scriptext}%
+ \edef\scriptbase{\pgfplotsplothandlercontourexternal@file}%
\edef\thecontourlevels{\pgfkeysvalueof{/pgfplots/contour/levels}}%
\edef\thecontournumber{\pgfkeysvalueof{/pgfplots/contour/number}}%
\immediate\openout\w@pgf@writea=\script
\immediate\write\w@pgf@writea{\pgfkeysvalueof{/pgfplots/contour external/script}}%
\immediate\closeout\w@pgf@writea
%
- \pgfplots@shellescape{\pgfkeysvalueof{/pgfplots/contour external/cmd}}%
+ \if S\pgfplotsplothandlercontourexternal@script@type
+ \pgfplots@shellescape{\cmd}%
+ \else
+ \ifpgfplots@LUA@supported
+ \pgfplotsutil@directlua{\pgfkeysvalueof{/pgfplots/contour external/cmd}}%
+ \else
+ \pgfplots@error{Calls to 'lua' are currently unsupported. Please invoke lualatex instead.}%
+ \fi
+ \fi
+ \pgfkeysvalueof{/pgfplots/contour external/@after cmd}\relax%
\endgroup
%
+ % RESET point meta computation here such that it can be collected from the 'contour prepared' stream (i.e. the output of contour external):
+ \global\let\pgfplots@metamin=\pgfplotsplothandlercontourexternal@metamin
+ \global\let\pgfplots@metamax=\pgfplotsplothandlercontourexternal@metamax
%
\pgfplotsplothandlercontourprepared
% the PREPARE steps in the coord stream start/end have already
diff --git a/Master/texmf-dist/tex/generic/pgfplots/pgfplotsstackedplots.code.tex b/Master/texmf-dist/tex/generic/pgfplots/pgfplotsstackedplots.code.tex
index 7f45bfb5bef..c9e1c15ac20 100644
--- a/Master/texmf-dist/tex/generic/pgfplots/pgfplotsstackedplots.code.tex
+++ b/Master/texmf-dist/tex/generic/pgfplots/pgfplotsstackedplots.code.tex
@@ -686,3 +686,8 @@
\def\pgf@plotyzerolevelstreamend{%
}%
}%
+
+% Initialize \pgfplots@stacked@diff to 0
+% Otherwise, if the first point in a plot is NaN \pgfplots@stacked@diff will be
+% undefined and an error is raised, see issue #219
+\def\pgfplots@stacked@diff{0}
diff --git a/Master/texmf-dist/tex/generic/pgfplots/util/pgfplotsutil.code.tex b/Master/texmf-dist/tex/generic/pgfplots/util/pgfplotsutil.code.tex
index 353a04ea945..5a014d44f23 100644
--- a/Master/texmf-dist/tex/generic/pgfplots/util/pgfplotsutil.code.tex
+++ b/Master/texmf-dist/tex/generic/pgfplots/util/pgfplotsutil.code.tex
@@ -412,6 +412,28 @@
\pgfplotslistcopy\pgfplots@glob@TMPa\to#2\relax
}
+% converts a foreach list to a fully expanded comma-separated list and assigns the result to \pgfplotsretval
+\long\def\pgfplots@foreach@to@list@macro#1{%
+ \begingroup
+ \pgfplotsapplistXnewempty\pgfplots@tmpa
+ \pgfplots@loc@tmptrue
+ \pgfkeys{/pgf/fpu}%
+ %
+ \pgfplotsforeachungrouped \pgfplots@i in {#1} {%
+ \ifpgfplots@loc@tmp
+ \pgfplots@loc@tmpfalse
+ \else
+ \pgfplotsapplistXpushback,\to\pgfplots@tmpa
+ \fi
+ \pgfmathfloattosci\pgfplots@i
+ \expandafter\pgfplotsapplistXpushback\pgfmathresult\to\pgfplots@tmpa
+ }%
+ \pgfplotsapplistXlet\pgfplots@loc@TMPa=\pgfplots@tmpa
+ \global\let\pgfplots@glob@TMPa=\pgfplots@loc@TMPa
+ \endgroup
+ \let\pgfplotsretval=\pgfplots@glob@TMPa
+}
+
% Removes duplicates in a comma separated list and creates a new list
% into the macro \pgfplotsretval. The list doesn't need to be sorted,