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-rw-r--r--Master/texmf-dist/doc/latex/texshade/README7
-rw-r--r--Master/texmf-dist/doc/latex/texshade/texshade.pdfbin1026660 -> 625524 bytes
-rw-r--r--Master/texmf-dist/source/latex/texshade/texshade.dtx375
-rw-r--r--Master/texmf-dist/tex/latex/texshade/texshade.sty247
4 files changed, 491 insertions, 138 deletions
diff --git a/Master/texmf-dist/doc/latex/texshade/README b/Master/texmf-dist/doc/latex/texshade/README
index 38bdbf86c1c..71e52fa0c26 100644
--- a/Master/texmf-dist/doc/latex/texshade/README
+++ b/Master/texmf-dist/doc/latex/texshade/README
@@ -1,6 +1,7 @@
- TeXshade v1.24
+ TeXshade v1.25
>>
- >> A LaTeX package for setting nucleotide and peptide alignments.
+ >> A LaTeX package for setting nucleotide and peptide alignments,
+ >> fingerprints, as well as sequence and subfamily logos.
>>
>> Setting alignments of nucleotides and peptides for publication
>> or presentation purposes is usually a time consuming two-step
@@ -26,7 +27,7 @@
>> ding modes. TeXshade combines highest flexibility and the
>> habitual TeX output quality--with reasonable time expenditure.
>>
- Copyright (C) 1999 - 2011 Eric Beitz
+ Copyright (C) 1999 - 2018 Eric Beitz
diff --git a/Master/texmf-dist/doc/latex/texshade/texshade.pdf b/Master/texmf-dist/doc/latex/texshade/texshade.pdf
index e0b6d09eb5f..f423a08595e 100644
--- a/Master/texmf-dist/doc/latex/texshade/texshade.pdf
+++ b/Master/texmf-dist/doc/latex/texshade/texshade.pdf
Binary files differ
diff --git a/Master/texmf-dist/source/latex/texshade/texshade.dtx b/Master/texmf-dist/source/latex/texshade/texshade.dtx
index f399815966a..adf4e661c36 100644
--- a/Master/texmf-dist/source/latex/texshade/texshade.dtx
+++ b/Master/texmf-dist/source/latex/texshade/texshade.dtx
@@ -10,7 +10,7 @@
% `README.txt' for further information!
%
%
-% Copyright (C) 1999-2011 Eric Beitz
+% Copyright (C) 1999-2018 Eric Beitz
% See the file texshade.txt
%
% \fi
@@ -393,6 +393,15 @@
% Postscript color samples are shown in the manual.
% }
%
+% \changes{1.25}{2011-12-01}{%
+% Corrections: aligments with many seqs produced wrong calculation
+% of threshold shading, corrected.
+% Introduction: new feature style |S-S| for disulfide bridges;
+% hooks in top feature lines can be drawn down to alignment.
+% }
+%
+%
+%
%
% \CharacterTable
% {Upper-case \A\B\C\D\E\F\G\H\I\J\K\L\M\N\O\P\Q\R\S\T\U\V\W\X\Y\Z
@@ -431,7 +440,7 @@
% for further information, updates and on-line documentation
% see my homepage at
% \texttt{www.pharmazie.uni-kiel.de/chem/Prof\_Beitz/biotex.html} }}
-% \date{\small v1.24; 2011/12/01\\[2pt]}
+% \date{\small v1.25; 2018/01/17\\[2pt]}
% \maketitle
% \begin{abstract}
% Setting alignments of nucleotides and peptides for publication
@@ -510,6 +519,16 @@
%
% \subsection{Version History}
%
+% \textbf{v1.25 2018/01/17}
+% \medskip
+%
+% \emph{Corrections}: Aligments with many seqs produced wrong calculation
+% of threshold shading,\footnote{Noted by Kathryn Parker.} corrected; minor bug fixes.
+%
+% \emph{Introduction}: A new feature style |S-S| for disulfide bridges is
+% implemented; hooks in top feature lines can be drawn down to alignment.
+% \medskip
+%
% \textbf{v1.24 2011/12/01}
% \medskip
%
@@ -527,7 +546,7 @@
% \emph{Introductions:}
% In diverse mode sequence positions where all residues match do not
% contain much information. A new command,
-% |\hideallmatchpositions|, \footnote{Requested by Matt Russell.}
+% |\hideallmatchpositions|,\footnote{Requested by Matt Russell.}
% will remove all such positions from the alignment and hence condense
% the output considerably.
% \medskip
@@ -598,7 +617,6 @@
% output.\footnote{Suggestion by Yun He.}
% \medskip
%
-% \newpage
%
% \textbf{v1.19 2009/03/09}
% \medskip
@@ -887,7 +905,6 @@
% |{1,2,3,6,5,4,7}|.
% \bigskip
%
-% \newpage
%
% \textbf{v1.3a\&b 2000/7/28 \& 2000/7/30}
% \medskip
@@ -969,7 +986,7 @@
% length of the sequences. Therefore, the command `|\seqlength|' was
% introduced (\ref{seqlines}). (b) With `|\gapcolors|' (also
% \ref{seqlines}) the
-% color selection for gap symbols is independent from non conserved
+% color selection for gap symbols is independent from non-conserved
% residues. (c) The divisions of the ruler where so far fixed to
% 10. Now, this value is changeable by `|\rulersteps|' (again
% \ref{seqlines}). (d) `|\hideresidues|' and `|\showresidues|' turn
@@ -1031,77 +1048,8 @@
% each \TeX{} system hides its default parameter file in a different
% place in the system.
%
-% In the following, an excerpt from the FAQ-list to \TeXshade{} is added.
-% This explains how
-% to increase the settings in Oz\TeX{} for the Macintosh, Mik\TeX{}
-% for Windows and te\TeX{} for *NIX \TeX{} distributions. Please contribute
-% to this list!
-%
-% \begin{enumerate}
-%
-% \item
-%
-% \textbf{Oz\TeX{} 4.0 for the Macintosh:}
-%
-% Find the file `OzTeX:TeX:Configs:Default'. This file contains
-% all memory settings. Look for the section
-% `\% TeX parameters' and increase the values that \TeX{} complains
-% about during the run. You will have to restart Oz\TeX{} before the
-% changes are active.
-%
-% For older versions of Oz\TeX{} the configuration file has the
-% same name but the path is somewhat different.
%
%
-% \item
-%
-% \textbf{te\TeX{} for *NIX:} (contributed by Joerg Daehn)
-%
-% Find the file: `/usr/share/texmf/web2c/texmf.cnf' or use
-%
-% |locate texmf.cnf| at the command prompt to find it.
-%
-% Login as super user. Backup `texmf.cnf' in case you destroy something and
-% then open the `texmf.cnf' file in your favorite text editor and use its
-% search function to locate |main_memory|. This variable is set to 384000.
-% Change this to some higher value, i.e. 4000000 (works fine for me!). The
-% total amount of memory should not exceed 8000000, so check the other
-% values in that section.
-%
-% Next, you want to change the stack size. Search for |stack_size|. This
-% will be set to 300. I changed it to 4000 and it works fine.
-%
-% There might be complains by \TeX{} about further specific parameters such
-% as |stack_size|. You find all those in the same file.
-%
-% After this you have to run `texconfig init'.
-%
-% Logout as root.
-%
-% After this all should be set for large alignments. Happy \TeX{}ing!
-%
-% The information on how to achieve this was derived from a mail in the
-% te\TeX{} mail archive. The original question was posted by Pascal Francq and
-% answered by Rolf Nieprasch.
-%
-%
-% \item
-%
-% \textbf{MiK\TeX{} for Windows:}
-%
-% The MiK\TeX{} documentation describes very detailed how the memory
-% settings can be changed. In brief, you must locate the
-% configuration file `miktex/config/miktex.ini'. In the [MiKTeX]
-% section of this file you find all the parameters you need, e.\,g.\
-% |mem_min|, |mem_max|, |buf_size|, |stack_size| etc.
-%
-% It appears, that the standard settings of MiK\TeX{} are bigger
-% than that of other \TeX{} installations, so it may not always be necessary
-% to increase the values.
-%
-%
-% \end{enumerate}
-%
%
%
% \subsection{System requirements} \label{require}
@@ -1234,7 +1182,7 @@
% \end{verbatim}
% }
%
-% This goes even furher. You can have \TeXshade{} select positions
+% This goes even further. You can have \TeXshade{} select positions
% based on the 3D coordinates provided by a PDB file, e.\,g.\ show
% all residues that are within an 8 \AA{} radius around the
% $\alpha$-carbon of the residue at position 81:
@@ -2999,7 +2947,7 @@
%
% \label{Llogocolor}\label{Lclearlogocolors}
% Logo colors can be turned to `Black' with the command
-% |\clearlogocolors[|\meta{color}|}| with the optional parameter
+% |\clearlogocolors[|\meta{color}|]| with the optional parameter
% not set. The optional parameter can be used to set all
% residue colors to \meta{color}, e.g.\ |\clearlogocolors[Blue]|.
% User specific logo color sets are defined by using
@@ -3346,7 +3294,7 @@
% \medskip
%
%
-% It is helpful to show a ruler (probably single-stepped, see p.\,\pageref{Lshowruler}) to
+% It is helpful to show a ruler (e.g. single-stepped, see p.\,\pageref{Lshowruler}) to
% label the residue positions.
%
% The resulting gaps between sequence stretches are marked by a vertical rule, which
@@ -3915,14 +3863,15 @@
% |-->|& right arrow \\
% |'->|& right arrow with up hook \\
% |<-|$\vert$ & left \emph{maps to} arrow \\
-% |<-o| & left arrow with ball at right end\\
+% |<-o|& left arrow with ball at right end\\
% |<=>|& double arrow, two heads \\
% |,-,|& plain bar with down hooks\\
% $\vert$|=|$\vert$ & double bar with vertical ends\\
+% |S-S|& labels disulfide bridges\\
% \end{tabular}
% \end{center}
%
-% All combinations of the left-end-characters
+% Combinations of the left-end-characters
% (|-=<',|$\vert$o), the middle-characters (|-=|),
% and the right-end-characters (|-=>',|$\vert$o) are
% allowed and produce the desired arrow or bar.
@@ -4427,7 +4376,7 @@
% existing file for the output. The great advantage of this method
% is its flexibility. Due to the simple reason that the feature
% file can be edited in the meantime. Thus, the user has the
-% ability to change the computer generated file according to his
+% ability to change the computer-generated file according to his
% personal needs. On the other hand, one can force \TeXshade{} to
% write a new file every time by the optional argument |[make new]| in the
% include command, e.\,g. |\includePHDsec[make new]{1}{AQP.phd}|.
@@ -6123,6 +6072,7 @@
% \> = |{helix[|\meta{helixcolor}|]}|\\
% \> = |{box[|\meta{framecolor,boxcolor}|][|\meta{length}|]:|\\
% \hspace{8.7cm}\meta{text}|[|\meta{textcolor}|]}|\\
+% \> = |{S-S}|\\
% \> = arrows and bars (|-=<',|$\vert$|o|)(|-=|)(|-=>',|$\vert$|o|)\\
% \> = |{translate[|\meta{color}|]}|\\
% \> = |{bar[|\meta{min}|,|\meta{max}|]:|\\
@@ -6469,7 +6419,8 @@
\openin\structurefile = hyperref.sty
\ifeof\structurefile
\else
- \usepackage[dvips,colorlinks]{hyperref}
+% \usepackage[dvips,colorlinks]{hyperref}
+ \usepackage[pdftex,colorlinks]{hyperref}
\fi
\closein\structurefile
\DisableCrossrefs
@@ -6486,8 +6437,8 @@
% \begin{macrocode}
%<*texshade>
\NeedsTeXFormat{LaTeX2e}
-\ProvidesPackage{texshade}[2011/05/13 LaTeX TeXshade (v1.24)]
-\message{Package `texshade', Version 1.24 of 2011/12/01.}
+\ProvidesPackage{texshade}[2018/01/17 LaTeX TeXshade (v1.25)]
+\message{Package `texshade', Version 1.25 of 2018/01/17.}
\PassOptionsToPackage{dvips}{color}
\PassOptionsToPackage{dvips}{graphicx}
@@ -6567,6 +6518,7 @@
\newlength\equal@height \newlength\temp@@length
\newlength\vspace@legend
\newlength\hspace@legend
+\newlength\bar@length
\newif\ifletter \newif\ifnumber
\newif\ifnewres \newif\ifall@shade
@@ -9075,7 +9027,7 @@
\expandafter\xdef\csname hide@@@seq\first@\endcsname{kill}
\ifnum\first@=\cons@num \xdef\cons@num{0} \fi
\advance\killseq@count by -1
- \seq@percent=100 \divide\seq@percent by \killseq@count
+% \seq@percent=100 \divide\seq@percent by \killseq@count
\fi
\fi\fi
\xdef\first@{\first@@ @}
@@ -9094,7 +9046,7 @@
\expandafter\xdef\csname hide@@@seq\fourth@\endcsname{kill}
\ifnum\fourth@=\cons@num \xdef\cons@num{0} \fi
\advance\killseq@count by -1
- \seq@percent=100 \divide\seq@percent by \killseq@count
+% \seq@percent=100 \divide\seq@percent by \killseq@count
\fi
\fi\fi
\killseq@
@@ -9596,22 +9548,33 @@
\expandafter\xdef\csname stack@\bottop@\seq@\endcsname{\tmpstack}
}
\def\getarrow@shape#1#2#3#4&{%
- \xdef\first@@{#1}\xdef\second@@{#2}\xdef\third@@{#3}
- \if\first@@ v
- \if\second@@ =
- \else \xdef\style@{\first@@ v\third@@#4} \fi
+ \xdef\first@@{#1}\xdef\second@@{#2}\xdef\third@@{#3}\xdef\fourth@@{#4}
+ \ifx\temp@@\y@
+ \if\first@@ ` \xdef\first@@{a} \else
+ \if\first@@ ' \xdef\first@@{a} \else
+ \if\first@@ , \xdef\first@@{b} \else
+ \if\first@@ S \xdef\first@@{c} \xdef\second@@{-}
+ \fi\fi\fi\fi
+ \if\third@@ ` \xdef\third@@{a} \else
+ \if\third@@ ' \xdef\third@@{a} \else
+ \if\third@@ , \xdef\third@@{b} \else
+ \if\third@@ S \xdef\third@@{c} \xdef\second@@{-}
+ \fi\fi\fi\fi
+ \xdef\style@{\first@@ -\third@@\fourth@@}
+ \fi
+ \if\first@@ S
+ \xdef\style@{\first@@ -\third@@\fourth@@}
\else
\if\first@@ v
- \if\second@@ =
- \else \xdef\style@{\first@@ v\third@@#4} \fi
+ \if\second@@ =
+ \else \xdef\style@{\first@@ v\third@@\fourth@@} \fi
\else
- \if\third@@ v
- \if\second@@ =
- \else \xdef\style@{\first@@ v\third@@#4} \fi
+ \if\third@@ S
+ \xdef\style@{\first@@ -\third@@\fourth@@}
\else
\if\third@@ v
\if\second@@ =
- \else \xdef\style@{\first@@ v\third@@#4} \fi
+ \else \xdef\style@{\first@@ v\third@@\fourth@@} \fi
\fi\fi\fi\fi
}
\def\get@shape#1#2#3{%
@@ -12381,7 +12344,11 @@
\fi
\xdef\style@{cons[color]:cons[\f@color][0]}
\else
- \xdef\style@{#4} \expandafter\getarrow@shape\temp@
+ \xdef\style@{#4} \xdef\temp@@{n}
+ \expandafter\get@firstfill\temp@
+ \if\second@@ ^ \xdef\second@@{_} \fi
+ \if\second@@ _ \xdef\temp@{\fill@char} \xdef\temp@@{y}\fi
+ \expandafter\getarrow@shape\temp@
\fi
\fi
\fi
@@ -14280,9 +14247,10 @@
\advance\pos@sum by 1 \fi
\ifnum\innerloopcount<\seq@count \repeat
- \multiply\pos@sum by \seq@percent
+% \multiply\pos@sum by \seq@percent
\expandafter\xdef\csname pos\the\loopcount\endcsname{\the\pos@sum}
- \expandafter\ifnum\csname pos\the\loopcount\endcsname<\thresh@ld
+% \expandafter\ifnum\csname pos\the\loopcount\endcsname<\thresh@ld
+ \expandafter\ifnum\csname pos\the\loopcount\endcsname<\thresh@ld@
\else
\expandafter\ifnum\csname pos\the\loopcount\endcsname>\m@x
\xdef\m@x{\csname pos\the\loopcount\endcsname}
@@ -14331,13 +14299,15 @@
\expandafter\ifnum\csname pos\the\loopcount\endcsname=\seq@count
\xdef\cons@seq{\the\loopcount} \xdef\match@case{2} \loopcount=1
\else
- \multiply\pos@sum by \seq@percent
+% \multiply\pos@sum by \seq@percent
\expandafter\xdef\csname pos\the\loopcount\endcsname{\the\pos@sum}
- \expandafter\ifnum\csname pos\the\loopcount\endcsname<\thresh@ld
+% \expandafter\ifnum\csname pos\the\loopcount\endcsname<\thresh@ld
+ \expandafter\ifnum\csname pos\the\loopcount\endcsname<\thresh@ld@
\else
\expandafter\ifnum\csname pos\the\loopcount\endcsname>\m@x
\xdef\m@x{\csname pos\the\loopcount\endcsname}
- \expandafter\ifnum\csname pos\the\loopcount\endcsname<\all@thresh@ld
+% \expandafter\ifnum\csname pos\the\loopcount\endcsname<\all@thresh@ld
+ \expandafter\ifnum\csname pos\the\loopcount\endcsname<\all@thresh@ld@
\xdef\cons@seq{\the\loopcount} \xdef\match@case{1}
\else
\xdef\cons@seq{\the\loopcount} \xdef\match@case{2}
@@ -17870,7 +17840,7 @@
\textcolor{\legend@fg}{%
\ifgerm@n\kern2ex\legend@size{nicht konserviert}%
\else\ifsp@nish\kern2ex\legend@size{no conservado}%
- \else\kern2ex\legend@size{non conserved}\fi\fi}
+ \else\kern2ex\legend@size{non-conserved}\fi\fi}
\newline\hbox{}\noindent%
\ifsimmode%
\ifnames@\ifnames@right\else\hbox to \name@width{\hss}\fi\fi
@@ -18359,6 +18329,8 @@
\def\get@tripletfill#1#2#3#4&{%
\multiply\temp@count by -1%
\def\second@@{#1}\def\second@@@{#2}\def\second@@@@{#3}\def\fill@char{#4&}}
+
+
\def\putfeature@style#1{%
\residues@size%
\setbox1=\hbox{\ensuremath{\overrightarrow{\hbox{}}}}%
@@ -18464,6 +18436,7 @@
\fontseries{\featurestyles@series}%
\fontshape{\featurestyles@shape}%
\selectfont%
+ \xdef\last@{bottom}%
\ifx\bottop@\temp@\xdef\last@{0.35}\else\xdef\last@{0}\fi%
\kern0.15\box@width%
\loopcount=0\relax%
@@ -18634,6 +18607,7 @@
\ifx\bottop@\temp@ \xdef\last@{0.35}\else\xdef\last@{-0.55}\fi%
\textcolor{\f@color}{%
\raisebox{\last@\arrow@height}{%
+ \if\first@@ b \xdef\first@@{,}\fi%
\if\first@@ ,%
\rule{0.1\arrow@height}{\arrow@height}\kern-0.35\arrow@height%
\else%
@@ -18645,10 +18619,15 @@
\rule[\arrow@height]%
{0.1\arrow@height}{\arrow@height}\kern-0.35\arrow@height%
\else%
+ \if\first@@ '%
+ \rule[\arrow@height]%
+ {0.1\arrow@height}{\arrow@height}\kern-0.35\arrow@height%
+ \else%
\if\first@@ -%
\rule{0pt}{0pt}\kern-0.35\arrow@height%
\fi%
\fi%
+ \fi%
\fi%
\fi%
\if\third@@ v%
@@ -18709,6 +18688,7 @@
\xdef\last@{-0.25}\fi\fi\fi\fi%
\textcolor{\f@color}{%
\raisebox{\last@\arrow@height}{%
+ \if\first@@ b \xdef\first@@{,}\fi%
\if\first@@ ,%
\rule[-0.5\arrow@height]{0.1\arrow@height}{1.5\arrow@height}%
\kern-0.1\arrow@height%
@@ -18717,7 +18697,8 @@
\rule[-0.5\arrow@height]{0.1\arrow@height}{2.25\arrow@height}%
\kern-0.1\arrow@height%
\else%
- \if\first@@ `\xdef\first@@{'}\fi%
+ \if\first@@ a \xdef\first@@{'}\fi%
+ \if\first@@ ` \xdef\first@@{'}\fi%
\if\first@@ '%
\rule[0.4\arrow@height]%
{0.1\arrow@height}{1.5\arrow@height}%
@@ -18742,6 +18723,7 @@
\rule[0.37\arrow@height]{\width@tmp}{0.1\arrow@height}%
\kern-\width@tmp%
\rule[0.9\arrow@height]{\width@tmp}{0.1\arrow@height}%
+ \if\first@@ b \xdef\first@@{,}\fi%
\if\third@@ ,%
\kern-0.05\arrow@height%
\rule[-0.5\arrow@height]{0.1\arrow@height}{1.5\arrow@height}%
@@ -18750,10 +18732,16 @@
\kern-0.05\arrow@height%
\rule[-0.5\arrow@height]{0.1\arrow@height}{2.25\arrow@height}%
\else%
- \if\third@@ `\xdef\third@@{'}\fi%
+ \if\first@@ a \xdef\first@@{'}\fi%
+ \if\third@@ ` \xdef\third@@{'}\fi%
\if\third@@ '%
\kern-0.05\arrow@height%
\rule[0.4\arrow@height]{0.1\arrow@height}{1.5\arrow@height}%
+ \else%
+ \if\third@@ a%
+ \kern-0.05\arrow@height%
+ \rule[0.4\arrow@height]{0.1\arrow@height}{1.5\arrow@height}%
+ \fi%
\fi%
\fi%
\fi%
@@ -18765,9 +18753,25 @@
\advance\width@tmp by -0.5\temp@@length%
\if\first@@ o\xdef\first@@{O}\fi%
\if\third@@ o\xdef\third@@{O}\fi%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \vspace{-20pt}\message{(((-20pt)))}%
+ \fi%
\textcolor{\f@color}{%
\if\first@@ ,%
- \rule{\temp@@length}{\arrow@height}\kern-\temp@@length%
+ \rule{\temp@@length}{\arrow@height}\kern-\temp@@length%
+ \else%
+ \if\first@@ b%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \rule{\temp@@length}{\arrow@height}\kern-\temp@@length%
+ \else
+ \xdef\shift@feature{y}%
+ \kern-\temp@@length%
+ \rule[-\bar@length]{\temp@@length}{\bar@length}%
+ \kern-\temp@@length%
+ \rule{\temp@@length}{\arrow@height}\kern-\temp@@length%
+ \fi
\else%
\if\first@@ |%
\rule{\temp@@length}{2\arrow@height}\kern-\temp@@length%
@@ -18776,6 +18780,52 @@
\raisebox{0.06ex}{\ensuremath{\bullet}}\kern-0.55ex%
\rule[\width@tmp]{0.65ex}{\temp@@length}%
\else%
+ \if\first@@ S%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \advance\width@tmp by 0.5\temp@@length%
+ \kern0.5\box@width%
+ \kern-2\temp@@length%
+ \rule[\width@tmp]{\temp@@length}{\arrow@height}%
+ \advance\width@tmp by -0.5\temp@@length%
+ \kern-\temp@@length%
+ \rule[\width@tmp]{0.5\temp@@length}{\temp@@length}%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \else%
+ \kern0.5\box@width%
+ \kern-2\temp@@length%
+ \rule{\temp@@length}{\arrow@height}%
+ \kern-\temp@@length%
+ \rule[\width@tmp]{0.5\temp@@length}{\temp@@length}%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \fi%
+ \else%
+ \if\first@@ c%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \advance\width@tmp by 0.5\temp@@length%
+ \raisebox{\arrow@height}{\rule[\box@height]{0pt}{\bar@length}}%%%%%%%%%%%%%%%%%%%%%%%
+ \kern0.5\box@width%
+ \kern-2\temp@@length%
+ \rule[2\arrow@height]{\temp@@length}{\bar@length}%%%%%%%%%%%%%%%%%%%%%%
+ \kern-\temp@@length%%%%%%%%%%%%%%%%%%%%%%%%%
+ \rule[\width@tmp]{\temp@@length}{\arrow@height}%
+ \advance\width@tmp by -0.5\temp@@length%
+ \kern-\temp@@length%
+ \rule[\width@tmp]{0.5\temp@@length}{\temp@@length}%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \else%
+ \xdef\shift@feature{y}%
+ \kern0.5\box@width%
+ \kern-2\temp@@length%
+ \rule[-\bar@length]{\temp@@length}{\bar@length}%
+ \kern-\temp@@length%
+ \rule{\temp@@length}{\arrow@height}%
+ \kern-\temp@@length%
+ \rule[\width@tmp]{0.5\temp@@length}{\temp@@length}%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \fi%
+ \else%
\if\first@@ <%
\raisebox{0.06ex}{\ensuremath{\blacktriangleleft}}\kern-0.35ex%
\else
@@ -18787,13 +18837,20 @@
\fi%
\fi%
\fi%
+ \fi%
+ \fi%
\fi%
\fi%
+ \fi%
\loopcount=\second@%
\if\first@@ <\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
\if\third@@ >\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
\if\first@@ O\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
\if\third@@ O\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
+ \if\first@@ S\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
+ \if\third@@ S\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
+ \if\first@@ c\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
+ \if\third@@ c\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
\xdef\second@{\the\loopcount}%
\rule[\width@tmp]{\second@\box@width}{\temp@@length}%
\setbox1=\hbox{\residues@size{\fill@char}}%
@@ -18804,6 +18861,17 @@
\if\third@@ ,%
\kern-\temp@@length\rule{\temp@@length}{\arrow@height}%
\else%
+ \if\third@@ b%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \kern-\temp@@length\rule{\temp@@length}{\arrow@height}%
+ \else
+ \xdef\shift@feature{y}%
+ \kern-\temp@@length%
+ \rule[-\bar@length]{\temp@@length}{\bar@length}%
+ \kern-\temp@@length\rule{\temp@@length}{\arrow@height}%
+ \fi
+ \else%
\if\third@@ |%
\kern-\temp@@length\rule{\temp@@length}{2\arrow@height}%
\else%
@@ -18811,6 +18879,31 @@
\rule[\width@tmp]{0.65ex}{\temp@@length}%
\kern-0.55ex\raisebox{0.06ex}{\ensuremath{\bullet}}%
\else%
+ \if\third@@ S%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \rule[\width@tmp]{0.5\temp@@length}{\temp@@length}%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \advance\width@tmp by 0.5\temp@@length%
+ \kern-\temp@@length\rule[\width@tmp]{\temp@@length}{\arrow@height}%
+ \else
+ \kern-\temp@@length\rule{\temp@@length}{\arrow@height}%
+ \fi%
+ \else%
+ \if\third@@ c%
+ \xdef\shift@feature{y}%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \kern-\temp@@length%%%%%%%%%%%%%%%%%%%%%%%%%
+ \rule[2\arrow@height]{\temp@@length}{\bar@length}%%%%%%%%%%%%%%%%%%%%%%
+ \advance\width@tmp by 0.5\temp@@length%
+ \kern-\temp@@length\rule[\width@tmp]{\temp@@length}{\arrow@height}%
+ \else
+ \kern-\temp@@length\rule[-\bar@length]{\temp@@length}{\bar@length}%
+ \kern-\temp@@length\rule{\temp@@length}{\arrow@height}%
+ \fi%
+ \else%
\if\third@@ >%
\kern-0.35ex\raisebox{0.06ex}{\ensuremath{\blacktriangleright}}%
\else
@@ -18821,7 +18914,10 @@
\fi%
\fi%
\fi%
- \fi
+ \fi%
+ \fi%
+ \fi%
+ \fi%
\fi}%
\fi
\fi
@@ -19622,10 +19718,23 @@
\xdef\featureposttttop{1} \xdef\featureposbbbbottom{1}%
\findc@nsensus%
\noindent%
+ \setlength{\bar@length}{0pt}%
+ \xdef\fe@turep@s{top}%
\ifnum\feature@ttttop=1
+ \advance\bar@length by \feature@tttop\baselineskip%
+ \advance\bar@length by \feature@ttop\baselineskip%
+ \advance\bar@length by \feature@top\baselineskip%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \tttt@sp@ce%
+ \advance\bar@length by \ttt@sp@ce%
+ \advance\bar@length by \tt@sp@ce%
\ifnum\featureonttttop=0 \xdef\feature@ttttop{0} \fi
\xdef\bottop@{ttttop}%
+ \xdef\shift@feature{n}%
\put@feature%
+ \advance\bar@length by -\baselineskip%
+ \ifx\shift@feature\y@ \vspace{-\bar@length}\fi%
+ \setlength{\bar@length}{0pt}%
\vspace{\tttt@sp@ce}%
\vspace{-\baselineskip}%
\newline\hbox{}%
@@ -19633,9 +19742,18 @@
\iffix@\ifttttopfeature \vspace{\tttt@sp@ce}\newline\hbox{}\newline\hbox{}\fi\fi
\fi
\ifnum\feature@tttop=1
+ \advance\bar@length by \feature@ttop\baselineskip%
+ \advance\bar@length by \feature@top\baselineskip%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \ttt@sp@ce%
+ \advance\bar@length by \tt@sp@ce%
\ifnum\featureontttop=0 \xdef\feature@tttop{0} \fi
\xdef\bottop@{tttop}%
+ \xdef\shift@feature{n}%
\put@feature%
+ \advance\bar@length by -\baselineskip%
+ \ifx\shift@feature\y@ \vspace{-\bar@length}\fi%
+ \setlength{\bar@length}{0pt}%
\vspace{\ttt@sp@ce}%
\vspace{-\baselineskip}%
\newline\hbox{}%
@@ -19643,9 +19761,16 @@
\iffix@\iftttopfeature \vspace{\ttt@sp@ce}\newline\hbox{}\newline\hbox{}\fi\fi
\fi
\ifnum\feature@ttop=1
+ \advance\bar@length by \feature@top\baselineskip%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \tt@sp@ce\message{tt\the\bar@length tt}%
\ifnum\featureonttop=0 \xdef\feature@ttop{0} \fi
\xdef\bottop@{ttop}%
+ \xdef\shift@feature{n}%
\put@feature%
+ \advance\bar@length by -\baselineskip%
+ \ifx\shift@feature\y@ \vspace{-\bar@length}\fi%
+ \setlength{\bar@length}{0pt}%
\vspace{\tt@sp@ce}%
\vspace{-\baselineskip}%
\newline\hbox{}%
@@ -19761,6 +19886,9 @@
\ifnum\ruler@rot=0 \vspace{0.25\baselineskip}\fi%
\fi%
\fi%
+ \xdef\fe@turep@s{bottom}%
+ \setlength{\bar@length}{0pt}%
+ \xdef\b@feature@count{0}
\ifnum\feature@bottom=1 %
\ifnum\featureonbottom=0 \xdef\feature@bottom{0}\fi%
\xdef\bottop@{bottom}%
@@ -19770,6 +19898,9 @@
\vspace{\b@r@stretch\box@height}%
\fi%
\put@feature%
+ \temp@@count=\b@feature@count%
+ \advance\temp@@count by 1%
+ \xdef\b@feature@count{\the\temp@@count}%
\else
\iffix@
\if\bottom@stretch y%
@@ -19782,14 +19913,25 @@
\fi%
\fi%
\ifnum\feature@bbottom=1 %
+ \advance\bar@length by \b@feature@count \baselineskip%
+ \multiply\bar@length by \b@r@stretch%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \bb@sp@ce\message{bb\the\bar@length bb}%
\ifnum\featureonbbottom=0 \xdef\feature@bbottom{0}\fi%
\xdef\bottop@{bbottom}%
\vspace{\bb@sp@ce}%
\if\bbottom@stretch y%
+ \advance\bar@length by -\box@height%
+ \advance\bar@length by \b@r@stretch\box@height%
\vspace{-\box@height}%
\vspace{\b@r@stretch\box@height}%
\fi%
+% \vspace{-\bar@length}%%%%%%%%%%%%%%%%%%%%%%%
+ \setlength{\bar@length}{0pt}%%%%%%%%%%%%%%%%%%%%%%%
\put@feature%
+ \temp@@count=\b@feature@count%
+ \advance\temp@@count by 1%
+ \xdef\b@feature@count{\the\temp@@count}%
\else
\iffix@
\if\bbottom@stretch y%
@@ -19802,6 +19944,10 @@
\fi
\fi
\ifnum\feature@bbbottom=1 %
+ \advance\bar@length by \b@feature@count\baselineskip%
+ \multiply\bar@length by \b@r@stretch%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \bbb@sp@ce\message{bbb\the\bar@length bbb}%
\ifnum\featureonbbbottom=0 \xdef\feature@bbbottom{0}\fi%
\xdef\bottop@{bbbottom}%
\vspace{\bbb@sp@ce}%
@@ -19810,6 +19956,9 @@
\vspace{\b@r@stretch\box@height}%
\fi%
\put@feature%
+ \temp@@count=\b@feature@count%
+ \advance\temp@@count by 1%
+ \xdef\b@feature@count{\the\temp@@count}%
\else
\iffix@
\if\bbbottom@stretch y%
@@ -19822,6 +19971,10 @@
\fi
\fi
\ifnum\feature@bbbbottom=1 %
+ \advance\bar@length by \b@feature@count\baselineskip%
+ \multiply\bar@length by \b@r@stretch%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \bbbb@sp@ce\message{bbbb\the\bar@length bbbb}%
\ifnum\featureonbbbbottom=0 \xdef\feature@bbbbottom{0}\fi%
\xdef\bottop@{bbbbottom}%
\vspace{\bbbb@sp@ce}%
@@ -20679,8 +20832,8 @@
\ifnum\loopcount<\seq@count \repeat
\xdef\seq@order{\seq@order,@}
\killseq@count=\seq@count
- \seq@percent=100
- \ifnum\seq@count>0 \divide\seq@percent by \seq@count \fi
+% \seq@percent=100
+% \ifnum\seq@count>0 \divide\seq@percent by \seq@count \fi
\fi
\fi
}
@@ -20948,6 +21101,10 @@
\caption[\c@pshort]{\c@p}
\fi
\fi
+ \loopcount = \thresh@ld \multiply\loopcount by \seq@count \divide\loopcount by 100
+ \xdef\thresh@ld@{\the\loopcount}
+ \loopcount = \all@thresh@ld \multiply\loopcount by \seq@count \divide\loopcount by 100
+ \xdef\all@thresh@ld@{\the\loopcount}
\bgroup
\ifx\out@put\y@\bigskip\fi
\iffuncmode \show@consfalse \fi
diff --git a/Master/texmf-dist/tex/latex/texshade/texshade.sty b/Master/texmf-dist/tex/latex/texshade/texshade.sty
index e22dae05130..615108bfd03 100644
--- a/Master/texmf-dist/tex/latex/texshade/texshade.sty
+++ b/Master/texmf-dist/tex/latex/texshade/texshade.sty
@@ -13,8 +13,8 @@
%%
\NeedsTeXFormat{LaTeX2e}
-\ProvidesPackage{texshade}[2011/05/13 LaTeX TeXshade (v1.24)]
-\message{Package `texshade', Version 1.24 of 2011/12/01.}
+\ProvidesPackage{texshade}[2018/01/17 LaTeX TeXshade (v1.25)]
+\message{Package `texshade', Version 1.25 of 2018/01/17.}
\PassOptionsToPackage{dvips}{color}
\PassOptionsToPackage{dvips}{graphicx}
@@ -94,6 +94,7 @@
\newlength\equal@height \newlength\temp@@length
\newlength\vspace@legend
\newlength\hspace@legend
+\newlength\bar@length
\newif\ifletter \newif\ifnumber
\newif\ifnewres \newif\ifall@shade
@@ -2593,7 +2594,6 @@
\expandafter\xdef\csname hide@@@seq\first@\endcsname{kill}
\ifnum\first@=\cons@num \xdef\cons@num{0} \fi
\advance\killseq@count by -1
- \seq@percent=100 \divide\seq@percent by \killseq@count
\fi
\fi\fi
\xdef\first@{\first@@ @}
@@ -2612,7 +2612,6 @@
\expandafter\xdef\csname hide@@@seq\fourth@\endcsname{kill}
\ifnum\fourth@=\cons@num \xdef\cons@num{0} \fi
\advance\killseq@count by -1
- \seq@percent=100 \divide\seq@percent by \killseq@count
\fi
\fi\fi
\killseq@
@@ -3114,22 +3113,33 @@
\expandafter\xdef\csname stack@\bottop@\seq@\endcsname{\tmpstack}
}
\def\getarrow@shape#1#2#3#4&{%
- \xdef\first@@{#1}\xdef\second@@{#2}\xdef\third@@{#3}
- \if\first@@ v
- \if\second@@ =
- \else \xdef\style@{\first@@ v\third@@#4} \fi
+ \xdef\first@@{#1}\xdef\second@@{#2}\xdef\third@@{#3}\xdef\fourth@@{#4}
+ \ifx\temp@@\y@
+ \if\first@@ ` \xdef\first@@{a} \else
+ \if\first@@ ' \xdef\first@@{a} \else
+ \if\first@@ , \xdef\first@@{b} \else
+ \if\first@@ S \xdef\first@@{c} \xdef\second@@{-}
+ \fi\fi\fi\fi
+ \if\third@@ ` \xdef\third@@{a} \else
+ \if\third@@ ' \xdef\third@@{a} \else
+ \if\third@@ , \xdef\third@@{b} \else
+ \if\third@@ S \xdef\third@@{c} \xdef\second@@{-}
+ \fi\fi\fi\fi
+ \xdef\style@{\first@@ -\third@@\fourth@@}
+ \fi
+ \if\first@@ S
+ \xdef\style@{\first@@ -\third@@\fourth@@}
\else
\if\first@@ v
\if\second@@ =
- \else \xdef\style@{\first@@ v\third@@#4} \fi
+ \else \xdef\style@{\first@@ v\third@@\fourth@@} \fi
\else
- \if\third@@ v
- \if\second@@ =
- \else \xdef\style@{\first@@ v\third@@#4} \fi
+ \if\third@@ S
+ \xdef\style@{\first@@ -\third@@\fourth@@}
\else
\if\third@@ v
\if\second@@ =
- \else \xdef\style@{\first@@ v\third@@#4} \fi
+ \else \xdef\style@{\first@@ v\third@@\fourth@@} \fi
\fi\fi\fi\fi
}
\def\get@shape#1#2#3{%
@@ -5894,7 +5904,11 @@
\fi
\xdef\style@{cons[color]:cons[\f@color][0]}
\else
- \xdef\style@{#4} \expandafter\getarrow@shape\temp@
+ \xdef\style@{#4} \xdef\temp@@{n}
+ \expandafter\get@firstfill\temp@
+ \if\second@@ ^ \xdef\second@@{_} \fi
+ \if\second@@ _ \xdef\temp@{\fill@char} \xdef\temp@@{y}\fi
+ \expandafter\getarrow@shape\temp@
\fi
\fi
\fi
@@ -7793,9 +7807,8 @@
\advance\pos@sum by 1 \fi
\ifnum\innerloopcount<\seq@count \repeat
- \multiply\pos@sum by \seq@percent
\expandafter\xdef\csname pos\the\loopcount\endcsname{\the\pos@sum}
- \expandafter\ifnum\csname pos\the\loopcount\endcsname<\thresh@ld
+ \expandafter\ifnum\csname pos\the\loopcount\endcsname<\thresh@ld@
\else
\expandafter\ifnum\csname pos\the\loopcount\endcsname>\m@x
\xdef\m@x{\csname pos\the\loopcount\endcsname}
@@ -7843,13 +7856,12 @@
\expandafter\ifnum\csname pos\the\loopcount\endcsname=\seq@count
\xdef\cons@seq{\the\loopcount} \xdef\match@case{2} \loopcount=1
\else
- \multiply\pos@sum by \seq@percent
\expandafter\xdef\csname pos\the\loopcount\endcsname{\the\pos@sum}
- \expandafter\ifnum\csname pos\the\loopcount\endcsname<\thresh@ld
+ \expandafter\ifnum\csname pos\the\loopcount\endcsname<\thresh@ld@
\else
\expandafter\ifnum\csname pos\the\loopcount\endcsname>\m@x
\xdef\m@x{\csname pos\the\loopcount\endcsname}
- \expandafter\ifnum\csname pos\the\loopcount\endcsname<\all@thresh@ld
+ \expandafter\ifnum\csname pos\the\loopcount\endcsname<\all@thresh@ld@
\xdef\cons@seq{\the\loopcount} \xdef\match@case{1}
\else
\xdef\cons@seq{\the\loopcount} \xdef\match@case{2}
@@ -11373,7 +11385,7 @@
\textcolor{\legend@fg}{%
\ifgerm@n\kern2ex\legend@size{nicht konserviert}%
\else\ifsp@nish\kern2ex\legend@size{no conservado}%
- \else\kern2ex\legend@size{non conserved}\fi\fi}
+ \else\kern2ex\legend@size{non-conserved}\fi\fi}
\newline\hbox{}\noindent%
\ifsimmode%
\ifnames@\ifnames@right\else\hbox to \name@width{\hss}\fi\fi
@@ -11862,6 +11874,7 @@
\def\get@tripletfill#1#2#3#4&{%
\multiply\temp@count by -1%
\def\second@@{#1}\def\second@@@{#2}\def\second@@@@{#3}\def\fill@char{#4&}}
+
\def\putfeature@style#1{%
\residues@size%
\setbox1=\hbox{\ensuremath{\overrightarrow{\hbox{}}}}%
@@ -11967,6 +11980,7 @@
\fontseries{\featurestyles@series}%
\fontshape{\featurestyles@shape}%
\selectfont%
+ \xdef\last@{bottom}%
\ifx\bottop@\temp@\xdef\last@{0.35}\else\xdef\last@{0}\fi%
\kern0.15\box@width%
\loopcount=0\relax%
@@ -12137,6 +12151,7 @@
\ifx\bottop@\temp@ \xdef\last@{0.35}\else\xdef\last@{-0.55}\fi%
\textcolor{\f@color}{%
\raisebox{\last@\arrow@height}{%
+ \if\first@@ b \xdef\first@@{,}\fi%
\if\first@@ ,%
\rule{0.1\arrow@height}{\arrow@height}\kern-0.35\arrow@height%
\else%
@@ -12148,10 +12163,15 @@
\rule[\arrow@height]%
{0.1\arrow@height}{\arrow@height}\kern-0.35\arrow@height%
\else%
+ \if\first@@ '%
+ \rule[\arrow@height]%
+ {0.1\arrow@height}{\arrow@height}\kern-0.35\arrow@height%
+ \else%
\if\first@@ -%
\rule{0pt}{0pt}\kern-0.35\arrow@height%
\fi%
\fi%
+ \fi%
\fi%
\fi%
\if\third@@ v%
@@ -12212,6 +12232,7 @@
\xdef\last@{-0.25}\fi\fi\fi\fi%
\textcolor{\f@color}{%
\raisebox{\last@\arrow@height}{%
+ \if\first@@ b \xdef\first@@{,}\fi%
\if\first@@ ,%
\rule[-0.5\arrow@height]{0.1\arrow@height}{1.5\arrow@height}%
\kern-0.1\arrow@height%
@@ -12220,7 +12241,8 @@
\rule[-0.5\arrow@height]{0.1\arrow@height}{2.25\arrow@height}%
\kern-0.1\arrow@height%
\else%
- \if\first@@ `\xdef\first@@{'}\fi%
+ \if\first@@ a \xdef\first@@{'}\fi%
+ \if\first@@ ` \xdef\first@@{'}\fi%
\if\first@@ '%
\rule[0.4\arrow@height]%
{0.1\arrow@height}{1.5\arrow@height}%
@@ -12245,6 +12267,7 @@
\rule[0.37\arrow@height]{\width@tmp}{0.1\arrow@height}%
\kern-\width@tmp%
\rule[0.9\arrow@height]{\width@tmp}{0.1\arrow@height}%
+ \if\first@@ b \xdef\first@@{,}\fi%
\if\third@@ ,%
\kern-0.05\arrow@height%
\rule[-0.5\arrow@height]{0.1\arrow@height}{1.5\arrow@height}%
@@ -12253,10 +12276,16 @@
\kern-0.05\arrow@height%
\rule[-0.5\arrow@height]{0.1\arrow@height}{2.25\arrow@height}%
\else%
- \if\third@@ `\xdef\third@@{'}\fi%
+ \if\first@@ a \xdef\first@@{'}\fi%
+ \if\third@@ ` \xdef\third@@{'}\fi%
\if\third@@ '%
\kern-0.05\arrow@height%
\rule[0.4\arrow@height]{0.1\arrow@height}{1.5\arrow@height}%
+ \else%
+ \if\third@@ a%
+ \kern-0.05\arrow@height%
+ \rule[0.4\arrow@height]{0.1\arrow@height}{1.5\arrow@height}%
+ \fi%
\fi%
\fi%
\fi%
@@ -12268,9 +12297,25 @@
\advance\width@tmp by -0.5\temp@@length%
\if\first@@ o\xdef\first@@{O}\fi%
\if\third@@ o\xdef\third@@{O}\fi%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \vspace{-20pt}\message{(((-20pt)))}%
+ \fi%
\textcolor{\f@color}{%
\if\first@@ ,%
- \rule{\temp@@length}{\arrow@height}\kern-\temp@@length%
+ \rule{\temp@@length}{\arrow@height}\kern-\temp@@length%
+ \else%
+ \if\first@@ b%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \rule{\temp@@length}{\arrow@height}\kern-\temp@@length%
+ \else
+ \xdef\shift@feature{y}%
+ \kern-\temp@@length%
+ \rule[-\bar@length]{\temp@@length}{\bar@length}%
+ \kern-\temp@@length%
+ \rule{\temp@@length}{\arrow@height}\kern-\temp@@length%
+ \fi
\else%
\if\first@@ |%
\rule{\temp@@length}{2\arrow@height}\kern-\temp@@length%
@@ -12279,6 +12324,52 @@
\raisebox{0.06ex}{\ensuremath{\bullet}}\kern-0.55ex%
\rule[\width@tmp]{0.65ex}{\temp@@length}%
\else%
+ \if\first@@ S%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \advance\width@tmp by 0.5\temp@@length%
+ \kern0.5\box@width%
+ \kern-2\temp@@length%
+ \rule[\width@tmp]{\temp@@length}{\arrow@height}%
+ \advance\width@tmp by -0.5\temp@@length%
+ \kern-\temp@@length%
+ \rule[\width@tmp]{0.5\temp@@length}{\temp@@length}%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \else%
+ \kern0.5\box@width%
+ \kern-2\temp@@length%
+ \rule{\temp@@length}{\arrow@height}%
+ \kern-\temp@@length%
+ \rule[\width@tmp]{0.5\temp@@length}{\temp@@length}%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \fi%
+ \else%
+ \if\first@@ c%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \advance\width@tmp by 0.5\temp@@length%
+ \raisebox{\arrow@height}{\rule[\box@height]{0pt}{\bar@length}}%%%%%%%%%%%%%%%%%%%%%%%
+ \kern0.5\box@width%
+ \kern-2\temp@@length%
+ \rule[2\arrow@height]{\temp@@length}{\bar@length}%%%%%%%%%%%%%%%%%%%%%%
+ \kern-\temp@@length%%%%%%%%%%%%%%%%%%%%%%%%%
+ \rule[\width@tmp]{\temp@@length}{\arrow@height}%
+ \advance\width@tmp by -0.5\temp@@length%
+ \kern-\temp@@length%
+ \rule[\width@tmp]{0.5\temp@@length}{\temp@@length}%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \else%
+ \xdef\shift@feature{y}%
+ \kern0.5\box@width%
+ \kern-2\temp@@length%
+ \rule[-\bar@length]{\temp@@length}{\bar@length}%
+ \kern-\temp@@length%
+ \rule{\temp@@length}{\arrow@height}%
+ \kern-\temp@@length%
+ \rule[\width@tmp]{0.5\temp@@length}{\temp@@length}%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \fi%
+ \else%
\if\first@@ <%
\raisebox{0.06ex}{\ensuremath{\blacktriangleleft}}\kern-0.35ex%
\else
@@ -12290,13 +12381,20 @@
\fi%
\fi%
\fi%
+ \fi%
+ \fi%
\fi%
\fi%
+ \fi%
\loopcount=\second@%
\if\first@@ <\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
\if\third@@ >\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
\if\first@@ O\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
\if\third@@ O\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
+ \if\first@@ S\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
+ \if\third@@ S\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
+ \if\first@@ c\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
+ \if\third@@ c\advance\loopcount by -1\relax\ifnum\loopcount<0 \loopcount=0\fi\fi%
\xdef\second@{\the\loopcount}%
\rule[\width@tmp]{\second@\box@width}{\temp@@length}%
\setbox1=\hbox{\residues@size{\fill@char}}%
@@ -12307,6 +12405,17 @@
\if\third@@ ,%
\kern-\temp@@length\rule{\temp@@length}{\arrow@height}%
\else%
+ \if\third@@ b%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \kern-\temp@@length\rule{\temp@@length}{\arrow@height}%
+ \else
+ \xdef\shift@feature{y}%
+ \kern-\temp@@length%
+ \rule[-\bar@length]{\temp@@length}{\bar@length}%
+ \kern-\temp@@length\rule{\temp@@length}{\arrow@height}%
+ \fi
+ \else%
\if\third@@ |%
\kern-\temp@@length\rule{\temp@@length}{2\arrow@height}%
\else%
@@ -12314,6 +12423,31 @@
\rule[\width@tmp]{0.65ex}{\temp@@length}%
\kern-0.55ex\raisebox{0.06ex}{\ensuremath{\bullet}}%
\else%
+ \if\third@@ S%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \rule[\width@tmp]{0.5\temp@@length}{\temp@@length}%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \advance\width@tmp by 0.5\temp@@length%
+ \kern-\temp@@length\rule[\width@tmp]{\temp@@length}{\arrow@height}%
+ \else
+ \kern-\temp@@length\rule{\temp@@length}{\arrow@height}%
+ \fi%
+ \else%
+ \if\third@@ c%
+ \xdef\shift@feature{y}%
+ \rule[\width@tmp]{0.5\box@width}{\temp@@length}%
+ \xdef\last@{bottom}%
+ \ifx\fe@turep@s\last@%
+ \kern-\temp@@length%%%%%%%%%%%%%%%%%%%%%%%%%
+ \rule[2\arrow@height]{\temp@@length}{\bar@length}%%%%%%%%%%%%%%%%%%%%%%
+ \advance\width@tmp by 0.5\temp@@length%
+ \kern-\temp@@length\rule[\width@tmp]{\temp@@length}{\arrow@height}%
+ \else
+ \kern-\temp@@length\rule[-\bar@length]{\temp@@length}{\bar@length}%
+ \kern-\temp@@length\rule{\temp@@length}{\arrow@height}%
+ \fi%
+ \else%
\if\third@@ >%
\kern-0.35ex\raisebox{0.06ex}{\ensuremath{\blacktriangleright}}%
\else
@@ -12324,7 +12458,10 @@
\fi%
\fi%
\fi%
- \fi
+ \fi%
+ \fi%
+ \fi%
+ \fi%
\fi}%
\fi
\fi
@@ -13125,10 +13262,23 @@
\xdef\featureposttttop{1} \xdef\featureposbbbbottom{1}%
\findc@nsensus%
\noindent%
+ \setlength{\bar@length}{0pt}%
+ \xdef\fe@turep@s{top}%
\ifnum\feature@ttttop=1
+ \advance\bar@length by \feature@tttop\baselineskip%
+ \advance\bar@length by \feature@ttop\baselineskip%
+ \advance\bar@length by \feature@top\baselineskip%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \tttt@sp@ce%
+ \advance\bar@length by \ttt@sp@ce%
+ \advance\bar@length by \tt@sp@ce%
\ifnum\featureonttttop=0 \xdef\feature@ttttop{0} \fi
\xdef\bottop@{ttttop}%
+ \xdef\shift@feature{n}%
\put@feature%
+ \advance\bar@length by -\baselineskip%
+ \ifx\shift@feature\y@ \vspace{-\bar@length}\fi%
+ \setlength{\bar@length}{0pt}%
\vspace{\tttt@sp@ce}%
\vspace{-\baselineskip}%
\newline\hbox{}%
@@ -13136,9 +13286,18 @@
\iffix@\ifttttopfeature \vspace{\tttt@sp@ce}\newline\hbox{}\newline\hbox{}\fi\fi
\fi
\ifnum\feature@tttop=1
+ \advance\bar@length by \feature@ttop\baselineskip%
+ \advance\bar@length by \feature@top\baselineskip%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \ttt@sp@ce%
+ \advance\bar@length by \tt@sp@ce%
\ifnum\featureontttop=0 \xdef\feature@tttop{0} \fi
\xdef\bottop@{tttop}%
+ \xdef\shift@feature{n}%
\put@feature%
+ \advance\bar@length by -\baselineskip%
+ \ifx\shift@feature\y@ \vspace{-\bar@length}\fi%
+ \setlength{\bar@length}{0pt}%
\vspace{\ttt@sp@ce}%
\vspace{-\baselineskip}%
\newline\hbox{}%
@@ -13146,9 +13305,16 @@
\iffix@\iftttopfeature \vspace{\ttt@sp@ce}\newline\hbox{}\newline\hbox{}\fi\fi
\fi
\ifnum\feature@ttop=1
+ \advance\bar@length by \feature@top\baselineskip%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \tt@sp@ce\message{tt\the\bar@length tt}%
\ifnum\featureonttop=0 \xdef\feature@ttop{0} \fi
\xdef\bottop@{ttop}%
+ \xdef\shift@feature{n}%
\put@feature%
+ \advance\bar@length by -\baselineskip%
+ \ifx\shift@feature\y@ \vspace{-\bar@length}\fi%
+ \setlength{\bar@length}{0pt}%
\vspace{\tt@sp@ce}%
\vspace{-\baselineskip}%
\newline\hbox{}%
@@ -13264,6 +13430,9 @@
\ifnum\ruler@rot=0 \vspace{0.25\baselineskip}\fi%
\fi%
\fi%
+ \xdef\fe@turep@s{bottom}%
+ \setlength{\bar@length}{0pt}%
+ \xdef\b@feature@count{0}
\ifnum\feature@bottom=1 %
\ifnum\featureonbottom=0 \xdef\feature@bottom{0}\fi%
\xdef\bottop@{bottom}%
@@ -13273,6 +13442,9 @@
\vspace{\b@r@stretch\box@height}%
\fi%
\put@feature%
+ \temp@@count=\b@feature@count%
+ \advance\temp@@count by 1%
+ \xdef\b@feature@count{\the\temp@@count}%
\else
\iffix@
\if\bottom@stretch y%
@@ -13285,14 +13457,24 @@
\fi%
\fi%
\ifnum\feature@bbottom=1 %
+ \advance\bar@length by \b@feature@count \baselineskip%
+ \multiply\bar@length by \b@r@stretch%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \bb@sp@ce\message{bb\the\bar@length bb}%
\ifnum\featureonbbottom=0 \xdef\feature@bbottom{0}\fi%
\xdef\bottop@{bbottom}%
\vspace{\bb@sp@ce}%
\if\bbottom@stretch y%
+ \advance\bar@length by -\box@height%
+ \advance\bar@length by \b@r@stretch\box@height%
\vspace{-\box@height}%
\vspace{\b@r@stretch\box@height}%
\fi%
+ \setlength{\bar@length}{0pt}%%%%%%%%%%%%%%%%%%%%%%%
\put@feature%
+ \temp@@count=\b@feature@count%
+ \advance\temp@@count by 1%
+ \xdef\b@feature@count{\the\temp@@count}%
\else
\iffix@
\if\bbottom@stretch y%
@@ -13305,6 +13487,10 @@
\fi
\fi
\ifnum\feature@bbbottom=1 %
+ \advance\bar@length by \b@feature@count\baselineskip%
+ \multiply\bar@length by \b@r@stretch%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \bbb@sp@ce\message{bbb\the\bar@length bbb}%
\ifnum\featureonbbbottom=0 \xdef\feature@bbbottom{0}\fi%
\xdef\bottop@{bbbottom}%
\vspace{\bbb@sp@ce}%
@@ -13313,6 +13499,9 @@
\vspace{\b@r@stretch\box@height}%
\fi%
\put@feature%
+ \temp@@count=\b@feature@count%
+ \advance\temp@@count by 1%
+ \xdef\b@feature@count{\the\temp@@count}%
\else
\iffix@
\if\bbbottom@stretch y%
@@ -13325,6 +13514,10 @@
\fi
\fi
\ifnum\feature@bbbbottom=1 %
+ \advance\bar@length by \b@feature@count\baselineskip%
+ \multiply\bar@length by \b@r@stretch%
+ \multiply\bar@length by 2%
+ \advance\bar@length by \bbbb@sp@ce\message{bbbb\the\bar@length bbbb}%
\ifnum\featureonbbbbottom=0 \xdef\feature@bbbbottom{0}\fi%
\xdef\bottop@{bbbbottom}%
\vspace{\bbbb@sp@ce}%
@@ -14181,8 +14374,6 @@
\ifnum\loopcount<\seq@count \repeat
\xdef\seq@order{\seq@order,@}
\killseq@count=\seq@count
- \seq@percent=100
- \ifnum\seq@count>0 \divide\seq@percent by \seq@count \fi
\fi
\fi
}
@@ -14450,6 +14641,10 @@
\caption[\c@pshort]{\c@p}
\fi
\fi
+ \loopcount = \thresh@ld \multiply\loopcount by \seq@count \divide\loopcount by 100
+ \xdef\thresh@ld@{\the\loopcount}
+ \loopcount = \all@thresh@ld \multiply\loopcount by \seq@count \divide\loopcount by 100
+ \xdef\all@thresh@ld@{\the\loopcount}
\bgroup
\ifx\out@put\y@\bigskip\fi
\iffuncmode \show@consfalse \fi
generated by cgit v1.2.3 (git 2.39.1) at 2024-11-07 10:37:05 +0000