diff options
Diffstat (limited to 'Master/texmf-dist')
| -rw-r--r-- | Master/texmf-dist/bibtex/bst/cell/cell.bst | 1464 | ||||
| -rw-r--r-- | Master/texmf-dist/doc/latex/cell/README | 10 | ||||
| -rw-r--r-- | Master/texmf-dist/tex/latex/cell/cell.sty | 99 |
3 files changed, 1573 insertions, 0 deletions
diff --git a/Master/texmf-dist/bibtex/bst/cell/cell.bst b/Master/texmf-dist/bibtex/bst/cell/cell.bst new file mode 100644 index 00000000000..8efb027ad56 --- /dev/null +++ b/Master/texmf-dist/bibtex/bst/cell/cell.bst @@ -0,0 +1,1464 @@ +% BibTex `cell' bibliography style +% version = 1.28 of cell.bst 2009 Jul 21 +% 2009 Jul 21, 1.28 upgrade documentation +% 2009 Jul 13, 1.27 suppress notes in article +% 2009 Jul 11, 1.26 upgrade to modern cell: &->and, give titles, \emph{vol} +% 1994 Oct 15, 1.25 from version = 1.27 of jmb.bst 1992 October 22 + +% This bibliography style is for the journal Cell. +% http://www.cell.com/ + +% Dr. Thomas D. Schneider +% National Institutes of Health +% schneidt@mail.nih.gov +% toms@alum.mit.edu (permanent) +% http://alum.mit.edu/www/toms + +% previous history: +% +% conversion from JMB to Cell by: +% changing emphasis to roman (\em to \rm) +% bold face to roman (\bf to \rm) (on volume) +% making the volume be italics +% removing the comma after the journal name +% +% Thomas Schneider +% National Cancer Institute +% Laboratory of Mathematical Biology +% Frederick, Maryland 21702-1013 +% toms@ncifcrf.gov +% +% This file is available by anonymous ftp from ncifcrf.gov in pub/delila. +% +% TITLES can be turned on and off! +% Just nocite the reference TitlesOn in the paper (i.e. \nocite{TitlesOn}) +% and have a bibliography article in your database with that cite key! +% +% WARNING: Since I use mostly article, book and inproceedings, these +% are formatted pretty closely to the Journal of Theoretical Biology style +% while other things are neglected. Also, I can't guarantee that the style +% is exactly right. +% +% The following documentation is identical from the source of jmb.bst, +% which was the apalike.bst taken from the Clarkson archive on 1989 June 19. +% +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% BibTeX `apalike' bibliography style (24-Jan-88 version) +% Adapted from the `alpha' style, version 0.99a; for BibTeX version 0.99a. +% Copyright (C) 1988, all rights reserved. +% Copying of this file is allowed, provided that if you make any changes at all +% you name it something other than `apalike.bst'. +% This restriction helps ensure that all copies are identical. +% Differences between this style and `alpha' are generally heralded by a `%'. +% The file btxbst.doc has the documentation for alpha.bst. +% +% This style should be used with the `apalike' LaTeX style (apalike.sty). +% \cite's come out like "(Jones, 1986)" in the text but there are no labels +% in the bibliography, and something like "(1986)" comes out immediately +% after the author. Author (and editor) names appear as last name, comma, +% initials. A `year' field is required for every entry, and so is either +% an author (or in some cases, an editor) field or a key field. +% +% Editorial note: +% Many journals require a style like `apalike', but I strongly, strongly, +% strongly recommend that you not use it if you have a choice---use something +% like `plain' instead. Mary-Claire van Leunen (A Handbook for Scholars, +% Knopf, 1979) argues convincingly that a style like `plain' encourages better +% writing than one like `apalike'. Furthermore the strongest arguments for +% using an author-date style like `apalike'---that it's "the most practical" +% (The Chicago Manual of Style, University of Chicago Press, thirteenth +% edition, 1982, pages 400--401)---fall flat on their face with the new +% computer-typesetting technology. For instance page 401 anachronistically +% states "The chief disadvantage of [a style like `plain'] is that additions +% or deletions cannot be made after the manuscript is typed without changing +% numbers in both text references and list." LaTeX sidesteps the disadvantage. +% +% History: +% 15-sep-86 (SK,OP) Original version, by Susan King and Oren Patashnik. +% 10-nov-86 (OP) Truncated the sort.key$ string to the correct length +% in bib.sort.order to eliminate error message. +% 24-jan-88 (OP) Updated for BibTeX version 0.99a, from alpha.bst 0.99a; +% apalike now sorts by author, then year, then title; +% THIS `apalike' VERSION DOES NOT WORK WITH BIBTEX 0.98i. +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% +% The program was further modified by Tom Schneider: +% +% 1989 June 19 (TDS) Renamed jmb.bst. Items that do not have years were +% listed in the bibliography without identifiers. However, they +% have identifiers in the text. The identifier was added. +% Titles were removed :-(. +% +% 1989 October 2 (TDS) Made labels in the paper use the & symbol rather +% than `and', as required by JMB. +% 1989 October 3 (TDS) Made et~al. be in italics. +% Removed comma after journal name. (actually, all +% mid sentence commas go!) +% Made volume number be bold faced. +% Converted colon (:) after volume number to a comma (,). +% If a journal name does NOT end in a period, add +% a comma after the name. +% 1989 October 14 (TDS) Without a year the program used to sort on the +% title. I made it sort on the cite$ if there is no year. +% 1989 October 18 (TDS) If there is one reference without a year, put +% an "a" at the end of its label, so that it comes out +% as (Smith, a) in the text. in FUNCTION {forward.pass} +% 1989 November 2 (TDS) Unpublished papers now give the title. +% 1989 November 18 (TDS) TITLES can be turned on and off! +% Just nocite the reference TitlesOn in the paper +% and have a bibliography article in your database +% with that cite key! +% 1989 December 5 (TDS) I can't stand sorting to fall back on the +% titles of the article - no control! So in function +% bib.sort.order the default is now cite$. +% 1990 November 14 (TDS) Changes to match JTB better: +% Names in the bibliography are now connected +% with "\&" instead of "and", since this fits JTB better. +% "In" is now "In:". +% "editors" and "editor" are now "eds" and "ed". +% booktitle follows editors. editors in parenthesis. +% pp. and p. instead of pages and page. +% location followed by colon (:) and then publisher. +% 1992 October 22 (TDS) Publisher address is at the end of books. +% with no colon after address. +% no comma before & in name list in bibliography. +% The extra.label (as the a of 1991a) is emphasized. +% "In:" goes back to "In"! +% publisher address is at the end of inproceedings. +% volume is "vol.", with comma after number. +% ed.", and comma after ) closing editors. +% as a colon (:), JMB does NOT want the next +% ed, but the format.title function uses +% which leaves it capitalized. To fix this, a +% place change.case$ must be written. +% +% When a title has a colon (:), JMB does NOT want the next +% word capitalized, but the format.title function uses +% change.case$, which leaves it capitalized. To fix this, a +% function to replace change.case$ was written: +% special.change.case +% +% edition should follow TITLE for books! + +% possible bug: sorting order probably should be first author followed +% by year; but this is not absolutely clear. Sorting here is (I think) +% by all authors (or perhaps the key) then year. + + +ENTRY % declare variables that have a value for each entry on the list + { address + author + booktitle + chapter + edition + editor + howpublished + institution + journal + key +% month not used in apalike + note + number + organization + pages + publisher + school + series + title + type + volume + year + } + {} + { label extra.label sort.label } + +INTEGERS { output.state before.all mid.sentence after.sentence after.block + docomma givetitles } + +FUNCTION {init.state.consts} +{ #0 'before.all := + #1 'mid.sentence := + #2 'after.sentence := + #3 'after.block := + + #0 'docomma := % if it is 0 then don't do commas, otherwise do them. +} + +FUNCTION {init.toggle.switches} +{% set switches for controlling the output! + #0 'givetitles := % if it is 0 then don't give titles, otherwise do them. +} + +STRINGS { s t } + +FUNCTION {output.nonnull} +{ 's := + output.state mid.sentence = +% "in of output.nonnull" warning$ + +% % { ", " * write$ } % the comma here is responsible for every comma! +% % % But JMB doesn't want commas, so away it goes! +% { " " * write$ } % That does it! + + { % doing a comma is controlled specifically in JMB using docomma + docomma #0 = + { " " * write$ } + { ", " * write$ } + if$ + } + { output.state after.block = + { add.period$ write$ + newline$ + "\newblock " write$ + } + { output.state before.all = + 'write$ + { add.period$ " " * write$ } + if$ + } + if$ + mid.sentence 'output.state := + } + if$ + s +% "out of output.nonnull" warning$ +} + +FUNCTION {output} +{ duplicate$ empty$ + 'pop$ + 'output.nonnull + if$ +} + +FUNCTION {output.check} +{ 't := +% "in output.check" warning$ + duplicate$ empty$ + { t "title" = + { pop$ } % jmb ignores titles and does not object if missing + { pop$ "empty " t * " in " * cite$ * warning$ } + if$ + } + 'output.nonnull % block periods + % { pop$ } % don't do anything + if$ +% "ouT of output.check" warning$ +} + +% t "title" = +% { "zowie" warning$ } +% { duplicate$ empty$ +% { pop$ "EmPtY " t * " in " * cite$ * warning$ } +% 'output.nonnull +% } +% if$ +% if$ +%} + +% apalike needs this function because +% the year has special punctuation; +% apalike ignores the month +FUNCTION {output.year.check} +{ year empty$ + { + "empty year in " cite$ ", using label: " extra.label * * * warning$ + write$ +% " (" extra.label * ")" * % TDS UNemphasized label + +% zzz here is the problem: +% extra.label "BLURB" * warning$ + " ({\rm{" extra.label * "}})" * % TDS emphasized label +% "BLORB" warning$ + + { label "{\rm{" extra.label "}}" * * * 'label :=} +% "BLUBEL" warning$ + + mid.sentence 'output.state := +% "BLIP" warning$ + } + { write$ + +% " (" year * extra.label * ")" * % TDS UNemphasized label + " (" year * "{\rm{" extra.label "}}" * * * ")" * % TDS emphasized label + + mid.sentence 'output.state := + } + if$ +% "POW" warning$ +} + +FUNCTION {output.bibitem} +{ newline$ + "\bibitem[" write$ + label write$ + "]{" write$ + cite$ write$ + "}" write$ + newline$ + "" + before.all 'output.state := +} + +FUNCTION {fin.entry} +{ add.period$ + write$ + newline$ +} + +FUNCTION {new.block} +{ output.state before.all = + 'skip$ + { after.block 'output.state := } + if$ +} + +FUNCTION {new.sentence} +{ output.state after.block = + 'skip$ + { output.state before.all = + 'skip$ + { after.sentence 'output.state := } + if$ + } + if$ +} + +FUNCTION {not} +{ { #0 } + { #1 } + if$ +} + +FUNCTION {and} +{ 'skip$ + { pop$ #0 } + if$ +} + +FUNCTION {or} +{ { pop$ #1 } + 'skip$ + if$ +} + +FUNCTION {new.block.checkb} +{ empty$ + swap$ empty$ + and + 'skip$ + 'new.block + if$ +} + +FUNCTION {field.or.null} +{ duplicate$ empty$ + { pop$ "" } + 'skip$ + if$ +} + +FUNCTION {emphasize} +{ duplicate$ empty$ + { pop$ "" } + { "{\rm " swap$ * "}" * } + if$ +} + +INTEGERS { nameptr namesleft numnames } + +FUNCTION {format.names} +{ 's := + #1 'nameptr := + s num.names$ 'numnames := + numnames 'namesleft := + { namesleft #0 > } + { s nameptr "{vv~}{ll}{, jj}{, f.}" format.name$ 't := % last name first + nameptr #1 > + { namesleft #1 > + { ", " * t * } + { numnames #2 > +% { "," * } % remove this comma TDS + { " " * } + 'skip$ + if$ + t "others" = + { " {\rm et~al.}" * } + %{ " \& " * t * } + % 2009 Jul 11: return to 'and' + { " and " * t * } + if$ + } + if$ + } + 't + if$ + nameptr #1 + 'nameptr := + namesleft #1 - 'namesleft := + } + while$ +} + +FUNCTION {format.authors} +{ author empty$ + { "" } + { author format.names } + if$ +} + +FUNCTION {format.key} % this function is just for apalike +{ empty$ + { key field.or.null } + { "" } + if$ +} + +FUNCTION {format.editors} +{ editor empty$ + { "" } + { editor format.names + editor num.names$ #1 > + { ", eds" * } % TDS + { ", ed." * } % TDS + if$ + } + if$ +} + +FUNCTION {special.change.case} +% change the entire string to lower case except +% for the first letter and things inside {} +% That is, force the first letter after a colon (:) to be lower case +% but otherwise use the change.case$ rules. +{ +% title "t" change.case$ % TDS this line was the original method + +% start with the first letter of the title, hang on stack +title #1 #1 substring$ + +% unearth this to see the breakpoint +%"|---|" * + +% take the title, change to entire lower case. +title "l" change.case$ + +% take from second position of lowered title to end of title +#2 +global.max$ +substring$ + +% concatenate first letter to rest of title +* +} + +FUNCTION {format.title} +{ title empty$ + { "" } + { % decide whether to give the title or not +% givetitles #1 = +%% { title "t" change.case$ } % produce the title % TDS original function +% { special.change.case } % produce the title +% { title pop$ "" } % don't produce the title +% if$ +% 2009 Jul 11: give the title for Cell now + title + } + if$ +} + +FUNCTION {n.dashify} +{ 't := + "" + { t empty$ not } + { t #1 #1 substring$ "-" = + { t #1 #2 substring$ "--" = not + { "--" * + t #2 global.max$ substring$ 't := + } + { { t #1 #1 substring$ "-" = } + { "-" * + t #2 global.max$ substring$ 't := + } + while$ + } + if$ + } + { t #1 #1 substring$ * + t #2 global.max$ substring$ 't := + } + if$ + } + while$ +} + +FUNCTION {format.btitle} +{ title emphasize +} + +FUNCTION {tie.or.space.connect} +{ duplicate$ text.length$ #3 < + { "~" } + { " " } + if$ + swap$ * * +} + +FUNCTION {either.or.check} +{ empty$ + 'pop$ + { "can't use both " swap$ * " fields in " * cite$ * warning$ } + if$ +} + +FUNCTION {format.bvolume} +{ volume empty$ + { "" } +% { "volume" volume tie.or.space.connect % TDS + { "vol." volume "," * tie.or.space.connect % made vol. + series empty$ + 'skip$ + { " of " * series emphasize * } + if$ +% "volume and number" number either.or.check % TDS + "vol. and num." number either.or.check % made vol. + } + if$ +} + +FUNCTION {format.number.series} +{ volume empty$ + { number empty$ + { series field.or.null } + { output.state mid.sentence = + { "number" } + { "Number" } + if$ + number tie.or.space.connect + series empty$ + { "there's a number but no series in " cite$ * warning$ } + { " in " * series * } + if$ + } + if$ + } + { "" } + if$ +} + +FUNCTION {format.edition} +{ edition empty$ + { "" } + { output.state mid.sentence = + { edition "l" change.case$ " edition" * } + { edition "t" change.case$ " edition" * } + if$ + } + if$ +} + +INTEGERS { multiresult } + +FUNCTION {multi.page.check} +{ 't := + #0 'multiresult := + { multiresult not + t empty$ not + and + } + { t #1 #1 substring$ + duplicate$ "-" = + swap$ duplicate$ "," = + swap$ "+" = + or or + { #1 'multiresult := } + { t #2 global.max$ substring$ 't := } + if$ + } + while$ + multiresult +} + +FUNCTION {format.pages} +{ pages empty$ + { "" } + { pages multi.page.check + { "pp." pages n.dashify tie.or.space.connect } % TDS + { "p." pages tie.or.space.connect } % TDS + if$ + } + if$ +} + +FUNCTION {format.vol.num.pages} +% { "{\rm " volume "}" * * field.or.null % make volume bold face +{ "\emph{" volume "}" * * field.or.null % make volume italics 2009 jul 11 + +% cell does not take numbers +% number empty$ +% 'skip$ +%% { " (" number * ")" * * +% { " ({\em " number "\/}" * * ")" * * % CELL IS ITALICS +%% zzz +% volume empty$ +% { "there's a number but no volume in " cite$ * warning$ } +% 'skip$ +% if$ +% } +% if$ + + pages empty$ + 'skip$ + { duplicate$ empty$ + { pop$ format.pages } +% { ":" * pages n.dashify * } % no more colons after the volume + { ", " * pages n.dashify * } % comma's instead + if$ + } + if$ +} + +FUNCTION {format.chapter.pages} +{ chapter empty$ + 'format.pages + { type empty$ + { "chapter" } + { type "l" change.case$ } + if$ + chapter tie.or.space.connect + pages empty$ + 'skip$ + { ", " * format.pages * } + if$ + } + if$ +} + +FUNCTION {format.in.ed.booktitle} +{ booktitle empty$ + { "" } + { editor empty$ + { "In " booktitle emphasize * } % TDS + { "In " booktitle emphasize * ", " * % That's the comma after the title + "(" format.editors ")," * * * } % TDS + if$ + } + if$ +} + +FUNCTION {format.thesis.type} +{ type empty$ + 'skip$ + { pop$ + type "t" change.case$ + } + if$ +} + +FUNCTION {format.tr.number} +{ type empty$ + { "Technical Report" } + 'type + if$ + number empty$ + { "t" change.case$ } + { number tie.or.space.connect } + if$ +} + +FUNCTION {format.article.crossref} +{ "In" % this is for apalike % TDS + " \cite{" * crossref * "}" * +} + +FUNCTION {format.book.crossref} +{ volume empty$ + { "empty volume in " cite$ * "'s crossref of " * crossref * warning$ + "In " % TDS + } + { "Volume" volume tie.or.space.connect + " of " * + } + if$ + "\cite{" * crossref * "}" * % this is for apalike +} + +FUNCTION {format.incoll.inproc.crossref} +{ "In" % this is for apalike % TDS + " \cite{" * crossref * "}" * +} + +FUNCTION {article} +{ + cite$ "TitlesOn" = + 'skip$ % Don't write out an article of this kind, it's a toggle switch! + { + output.bibitem + format.authors "author" output.check + author format.key output % special for +% "===> about to" warning$ + output.year.check % apalike +% "===> after it" warning$ + new.block +% yyy + format.title "title" output.check + new.block + crossref missing$ + { % figure out the last character of the journal name. + % "<<" journal #-1 #1 substring$ ">>" * * % for testing + % "<" journal ">" * * % this works ok % for testing + + journal #-1 #1 substring$ "." = + { journal } % journal ended in period so don't do anything +% { journal ", " *} % journal ended without period, so add comma + { journal " " *} % journal ended without period, so add comma NONE FOR CELL + if$ + emphasize "journal" output.check + +% journal * emphasize "journal" output.check % the original method + + format.vol.num.pages output + } + { format.article.crossref output.nonnull + format.pages output + } + if$ +% new.block % 2009 jul 13: suppress notes +% note output % 2009 jul 13: suppress notes + fin.entry + } + if$ +} + +FUNCTION {book} +{ output.bibitem + author empty$ + { format.editors "author and editor" output.check + editor format.key output + } + { format.authors output.nonnull + crossref missing$ + { "author and editor" editor either.or.check } + 'skip$ + if$ + } + if$ + output.year.check % special for apalike + new.block + format.btitle "title" output.check + #1 'docomma := % TURN COMMAS ON FOR JMB + crossref missing$ + { + format.bvolume output + new.block + format.number.series output + format.edition output % TDS JMB position for edition +% new.sentence +% #0 'docomma := % no comma after address +% address ":" * output % TDS + publisher "publisher" output.check % TDS +% #1 'docomma := % comma back on +% publisher "publisher" output.check +% address output + address output % TDS - no colon! + } + { new.block + format.book.crossref output.nonnull + } + if$ +% format.edition output % TDS original position of edition + new.block + note output + fin.entry + #0 'docomma := % TURN COMMAS OFF +} + +FUNCTION {booklet} +{ output.bibitem + format.authors output + author format.key output % special for + output.year.check % apalike + new.block + format.title "title" output.check + new.block + howpublished output + address output + new.block + note output + fin.entry +} + +FUNCTION {inbook} +{ output.bibitem + author empty$ + { format.editors "author and editor" output.check + editor format.key output + } + { format.authors output.nonnull + crossref missing$ + { "author and editor" editor either.or.check } + 'skip$ + if$ + } + if$ + output.year.check % special for apalike + new.block + format.btitle "title" output.check + crossref missing$ + { format.bvolume output + format.chapter.pages "chapter and pages" output.check + new.block + format.number.series output + new.sentence + #0 'docomma := % no comma after address + address ":" * output % TDS + publisher "publisher" output.check % TDS + #1 'docomma := % comma back on +% publisher "publisher" output.check +% address output + } + { format.chapter.pages "chapter and pages" output.check + new.block + format.book.crossref output.nonnull + } + if$ + format.edition output + new.block + note output + fin.entry +} + +FUNCTION {incollection} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + new.block + format.title "title" output.check + new.block + crossref missing$ + { format.in.ed.booktitle "booktitle" output.check + format.bvolume output + format.number.series output + format.chapter.pages output + new.sentence + publisher "publisher" output.check + address output + format.edition output + } + { format.incoll.inproc.crossref output.nonnull + format.chapter.pages output + } + if$ + new.block + note output + fin.entry +} + +FUNCTION {inproceedings} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + new.block + format.title "title" output.check + new.block + crossref missing$ + { +% #1 'docomma := % TURN COMMAS ON FOR JMB, BUT NOT FOR JTB: inconsistent. TDS NOW + format.in.ed.booktitle "booktitle" output.check + format.bvolume output + format.number.series output + format.pages + pages empty$ + { output } + { "," * output } % TDS toss in comma instead of period + if$ + +% address output % TDS address is below for JTB +% new.sentence % TDS remove period + organization output + #0 'docomma := % NO COMMA AFTER ADDRESS + publisher "publisher" output.check % TDS + #1 'docomma := % comma back on + +% publisher output % are simpler + address output % TDS + #0 'docomma := % TURN COMMAS OFF + } + { format.incoll.inproc.crossref output.nonnull + format.pages output + } + if$ + new.block + note output + fin.entry +} + +FUNCTION {conference} { inproceedings } + +FUNCTION {manual} +{ output.bibitem + format.authors output + author format.key output % special for + output.year.check % apalike + new.block + format.btitle "title" output.check + organization address new.block.checkb + organization output + address output + format.edition output + new.block + note output + fin.entry +} + +FUNCTION {mastersthesis} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + new.block + format.title "title" output.check + new.block + "Master's thesis" format.thesis.type output.nonnull + school "school" output.check + address output + new.block + note output + fin.entry +} + +FUNCTION {misc} +{ output.bibitem + format.authors output + author format.key output % special for + output.year.check % apalike + new.block + format.title output + new.block + howpublished output + new.block + note output + fin.entry +} + +FUNCTION {phdthesis} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + new.block + format.btitle "title" output.check + new.block + "PhD thesis," format.thesis.type output.nonnull + school "school" output.check + address output + new.block + note output + fin.entry +} + +FUNCTION {proceedings} +{ output.bibitem + format.editors output + editor format.key output % special for + output.year.check % apalike + new.block + format.btitle "title" output.check + format.bvolume output + format.number.series output + address output % for apalike + new.sentence % we always output + organization output % a nonempty organization + publisher output % here + new.block + note output + fin.entry +} + +FUNCTION {techreport} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for + output.year.check % apalike + new.block + format.title "title" output.check + new.block + format.tr.number output.nonnull + institution "institution" output.check + address output + new.block + note output + fin.entry +} + +FUNCTION {unpublished} +{ output.bibitem + format.authors "author" output.check + author format.key output % special for +% "===> about to unpuBLISH" warning$ + output.year.check % apalike +% "===> out of to unpuBLISH" warning$ + new.block +% "===> PLEASE PLEASE BE HERE" warning$ + +% Since format.title is out of commission, the original method won't work: +% format.title "title" output.check +% so do the equivalent of the format.title procedure: (TDS) + title empty$ + { "" } + { title "t" change.case$ } % produce the title + if$ +% "===> perfidity 1" warning$ + "title" output.check +% "===> perfidity" warning$ + + new.block + note "note" output.check + fin.entry + +% "===> GOlly done" warning$ +} + +FUNCTION {default.type} { misc } + +MACRO {jan} {"January"} + +MACRO {feb} {"February"} + +MACRO {mar} {"March"} + +MACRO {apr} {"April"} + +MACRO {may} {"May"} + +MACRO {jun} {"June"} + +MACRO {jul} {"July"} + +MACRO {aug} {"August"} + +MACRO {sep} {"September"} + +MACRO {oct} {"October"} + +MACRO {nov} {"November"} + +MACRO {dec} {"December"} + +MACRO {acmcs} {"ACM Computing Surveys"} + +MACRO {acta} {"Acta Informatica"} + +MACRO {cacm} {"Communications of the ACM"} + +MACRO {ibmjrd} {"IBM Journal of Research and Development"} + +MACRO {ibmsj} {"IBM Systems Journal"} + +MACRO {ieeese} {"IEEE Transactions on Software Engineering"} + +MACRO {ieeetc} {"IEEE Transactions on Computers"} + +MACRO {ieeetcad} + {"IEEE Transactions on Computer-Aided Design of Integrated Circuits"} + +MACRO {ipl} {"Information Processing Letters"} + +MACRO {jacm} {"Journal of the ACM"} + +MACRO {jcss} {"Journal of Computer and System Sciences"} + +MACRO {scp} {"Science of Computer Programming"} + +MACRO {sicomp} {"SIAM Journal on Computing"} + +MACRO {tocs} {"ACM Transactions on Computer Systems"} + +MACRO {tods} {"ACM Transactions on Database Systems"} + +MACRO {tog} {"ACM Transactions on Graphics"} + +MACRO {toms} {"ACM Transactions on Mathematical Software"} + +MACRO {toois} {"ACM Transactions on Office Information Systems"} + +MACRO {toplas} {"ACM Transactions on Programming Languages and Systems"} + +MACRO {tcs} {"Theoretical Computer Science"} + +READ + +% *********************************************************** + +FUNCTION {check.for.titlecommand} +% go through each entry and see if one of them has the key +% 'TitlesOn'. If this is found, then do titles! +% 1989 November 18 TDS +{ +% "|" label "|" * * write$ newline$ % |Arrhenius {\rm et~al.}, 1986| +% "|" cite$ "|" * * write$ newline$ % |Arrhenius1986| +% so cite$ is the thing I want to detect... + + cite$ "TitlesOn" = + { % got it! +% "FOUND TitlesOn" write$ newline$ + "Titles Will Be Printed" warning$ + #1 'givetitles := % give titles! + } + 'skip$ + if$ +} +EXECUTE {init.toggle.switches} +ITERATE {check.for.titlecommand} +% *********************************************************** + +FUNCTION {sortify} +{ purify$ + "l" change.case$ +} + +INTEGERS { len } + +FUNCTION {chop.word} +{ 's := + 'len := + s #1 len substring$ = + { s len #1 + global.max$ substring$ } + 's + if$ +} + +% There are three apalike cases: one person (Jones), +% two (Jones and de~Bruijn), and more (Jones et~al.). +% This function is much like format.crossref.editors. +% +FUNCTION {format.lab.names} +{ 's := + s #1 "{vv~}{ll}" format.name$ + s num.names$ duplicate$ + #2 > + { pop$ " {\rm et~al.}" * } + { #2 < + 'skip$ + { s #2 "{ff }{vv }{ll}{ jj}" format.name$ "others" = + { " {\rm et~al.}" * } + % { " \& " * s #2 "{vv~}{ll}" format.name$ * } + % note new use of & rather than `and'. TDS + % 2009 jul 11: return to 'and' + { " and " * s #2 "{vv~}{ll}" format.name$ * } + if$ + } + if$ + } + if$ +} + +FUNCTION {author.key.label} +{ author empty$ + { key empty$ + { cite$ #1 #3 substring$ } + 'key % apalike uses the whole key + if$ + } + { author format.lab.names } + if$ +} + +FUNCTION {author.editor.key.label} +{ author empty$ + { editor empty$ + { key empty$ + { cite$ #1 #3 substring$ } + 'key % apalike uses the whole key + if$ + } + { editor format.lab.names } + if$ + } + { author format.lab.names } + if$ +} + +FUNCTION {editor.key.label} +{ editor empty$ + { key empty$ + { cite$ #1 #3 substring$ } + 'key % apalike uses the whole key, no organization + if$ + } + { editor format.lab.names } + if$ +} + +FUNCTION {calc.label} +{ type$ "book" = + type$ "inbook" = + or + 'author.editor.key.label + { type$ "proceedings" = + 'editor.key.label % apalike ignores organization + 'author.key.label % for labeling and sorting + if$ + } + if$ + ", " % these three lines are + * % for apalike, which + year field.or.null purify$ #-1 #4 substring$ % uses all four digits + * + 'label := +} + +FUNCTION {sort.format.names} +{ 's := + #1 'nameptr := + "" + s num.names$ 'numnames := + numnames 'namesleft := + { namesleft #0 > } + { nameptr #1 > + { " " * } + 'skip$ + if$ % apalike uses initials + s nameptr "{vv{ } }{ll{ }}{ f{ }}{ jj{ }}" format.name$ 't := % <= here + nameptr numnames = t "others" = and + { "{\rm et al}" * } + { t sortify * } + if$ + nameptr #1 + 'nameptr := + namesleft #1 - 'namesleft := + } + while$ +} + +FUNCTION {sort.format.title} +{ 't := + "A " #2 + "An " #3 + "The " #4 t chop.word + chop.word + chop.word + sortify + #1 global.max$ substring$ +} + +FUNCTION {author.sort} +{ author empty$ + { key empty$ + { "to sort, need author or key in " cite$ * warning$ + "" + } + { key sortify } + if$ + } + { author sort.format.names } + if$ +} + +FUNCTION {author.editor.sort} +{ author empty$ + { editor empty$ + { key empty$ + { "to sort, need author, editor, or key in " cite$ * warning$ + "" + } + { key sortify } + if$ + } + { editor sort.format.names } + if$ + } + { author sort.format.names } + if$ +} + +FUNCTION {editor.sort} +{ editor empty$ + { key empty$ + { "to sort, need editor or key in " cite$ * warning$ + "" + } + { key sortify } + if$ + } + { editor sort.format.names } + if$ +} + +% apalike uses two sorting passes; the first one sets the +% labels so that the `a's, `b's, etc. can be computed; +% the second pass puts the references in "correct" order. +% The presort function is for the first pass. It computes +% label, sort.label, and title, and then concatenates. +FUNCTION {presort} +{ calc.label + label sortify + " " + * + type$ "book" = + type$ "inbook" = + or + 'author.editor.sort + { type$ "proceedings" = + 'editor.sort + 'author.sort + if$ + } + if$ + #1 entry.max$ substring$ % for + 'sort.label := % apalike + sort.label % style + * + " " + * + title field.or.null + sort.format.title + * + #1 entry.max$ substring$ + 'sort.key$ := +} + +ITERATE {presort} + +SORT % by label, sort.label, title---for final label calculation + +STRINGS { last.label next.extra } % apalike labels are only for the text; + +INTEGERS { last.extra.num } % there are none in the bibliography + +FUNCTION {initialize.extra.label.stuff} % and hence there is no `longest.label' +{ #0 int.to.chr$ 'last.label := + "" 'next.extra := + #0 'last.extra.num := +} + +FUNCTION {forward.pass} +% pass through the references forward +{ +%"\\ label=" label "//" * * write$ newline$ % display the label +%"\\last.label=" last.label "//" * * write$ newline$ % display the label + + last.label label = % if the label repeats the previous label... + { % then increment the extra number + last.extra.num #1 + 'last.extra.num := + % and convert it to a label + last.extra.num int.to.chr$ 'extra.label := + } + { % else set things up for the next entry + "a" chr.to.int$ 'last.extra.num := + + % However, if the year was missing, tack on an extra "a". TDS + year empty$ + {"a" 'extra.label :=} + {"" 'extra.label :=} + if$ + +% "" 'extra.label := % the original method was not to do anything TDS + + label 'last.label := % capture this label for next time + } + if$ +%"\\extra.label = " extra.label "//" * * write$ newline$ % display the label +} + +FUNCTION {reverse.pass} +% pass through the references backwards +% add extra characters to the end of the label string +{ +%"{{" label "}}" * * write$ newline$ % display the label + next.extra "b" = +% original logic: + { "a" 'extra.label := } + 'skip$ + if$ + +% next.extra "b" = { "next.extra was = b" write$ newline$} 'skip$ if$ + +% new as of 1989 Oct 18 +% { "a" 'extra.label := } +% { % Put on an "a" at the end of the label if the year is missing. TDS +% year empty$ +% { "a" 'extra.label := } +% %{ label "a" * 'label := } +% 'skip$ % otherwise leave it alone (orignial method) +% if$ } +% if$ + +% label extra.label * 'label := % TDS ORIGINAL LABEL METHOD + +% stick {\rm } around extra.label if it's not empty TDS + extra.label "" = + 'skip$ + { label "{\rm{" extra.label "}}" * * * 'label :=} + if$ + + extra.label 'next.extra := +%"{{" label "}}" * * write$ newline$ % display the label +} + +FUNCTION {bib.sort.order} +% Generate the sort.key$ variables for sorting. +% The sorting is first on the sort.label (ie, author's name), followed +% by the year then the title. If there is no year, the cite$ is used. +{ + sort.label % this is based on the author name + " " * % tack on some space +% original apa command was to use the year or an empty string: +% year field.or.null sortify +% +% Replace that with the use of the cite$, when there is no year: + year duplicate$ empty$ + {pop$ cite$} + 'skip$ + if$ + + * " " * % tack on some space + +% I CAN'T STAND SORTING ON TITLE!!! TDS 1989 Dec 5 +% title field.or.null +% sort.format.title +% * % attach them together + cite$ + * % use cite$ instead!! + + % note: if there is no year, then the cite$ will override the sorting + % on the title. Oh well. Title sorting is sorta (ha ha) awful. + + #1 entry.max$ substring$ + 'sort.key$ := + + % The following line helps debug the program. It shows what the sort.key$ is. + % "%" sort.key$ * write$ newline$ +} + +% Here is the place that the actual executions of the labeling and sorting +% functions are done. + + +EXECUTE {initialize.extra.label.stuff} % initialize variables +ITERATE {bib.sort.order} % set up the sorting keys +SORT % by sort.label, year, title---giving final bibliography order +% Having sorted NOW we apply the extra letters at the end! +ITERATE {forward.pass} +REVERSE {reverse.pass} + +FUNCTION {begin.bib} +{ preamble$ empty$ % no \etalchar in apalike + 'skip$ + { preamble$ write$ newline$ } + if$ + "\begin{thebibliography}{}" write$ newline$ % no labels in apalike +} + +EXECUTE {begin.bib} + +EXECUTE {init.state.consts} + +ITERATE {call.type$} + +FUNCTION {end.bib} +{ newline$ + "\end{thebibliography}" write$ newline$ +} + +EXECUTE {end.bib} diff --git a/Master/texmf-dist/doc/latex/cell/README b/Master/texmf-dist/doc/latex/cell/README new file mode 100644 index 00000000000..bd85dc94607 --- /dev/null +++ b/Master/texmf-dist/doc/latex/cell/README @@ -0,0 +1,10 @@ +for the journal Cell +http://www.cell.com/ +cell.bst +cell.sty + + Dr. Thomas D. Schneider + National Institutes of Health + schneidt@mail.nih.gov + toms@alum.mit.edu (permanent) + http://alum.mit.edu/www/toms diff --git a/Master/texmf-dist/tex/latex/cell/cell.sty b/Master/texmf-dist/tex/latex/cell/cell.sty new file mode 100644 index 00000000000..b43a060f85c --- /dev/null +++ b/Master/texmf-dist/tex/latex/cell/cell.sty @@ -0,0 +1,99 @@ +% version = 2.03 of cell.sty 2009 Jul 21 +% 2009 Jul 21, 2.03: upgrade documentation +% 2009 Jul 15, 2.02: no bib indent +% 2009 Jul 14, 2.01: simplify +% 2009 Jul 13, 2.00: modernize to match current version of Cell +% 1998 Mar 3, 1.00: original version of cell.sty + +% Dr. Thomas D. Schneider +% National Institutes of Health +% schneidt@mail.nih.gov +% toms@alum.mit.edu (permanent) +% http://alum.mit.edu/www/toms + +% This is a simple style file for the journal Cell. +% http://www.cell.com/ + +% change commas to semicolons between references in text: +% \RequirePackageWithOptions[nosort,nocompress]{cite} % crashes +\RequirePackage{cite} + +% \renewcommand\citepunct{;~} +\renewcommand\citepunct{;\ } % to allow line breaks in the best place. + +% Use parens instead of brackets for \cite +\renewcommand\citeleft{(} +\renewcommand\citeright{)} + +% no label in the bibliography +% \def\@biblabel#1{} % that would indent +\def\@biblabel#1{\hspace{-\labelsep}} % avoid bib indent + +% Thanks for suggestions from Donald Arseneau: +% http://tug.org/pipermail/texhax/2009-July/012892.html + +% ****************************************************************************** + +% old history: +% cell.sty is the same as jmb.sty, +% which is identical to apalike.sty 1989 June 19 +% +% apalike.sty style, used in conjunction with apalike.bst, +% will produce an apa-like bibliography style: +% +% 1) Bibliography entries formatted alphabetically, last name +% first, each entry having a hanging indentation and no label. +% 2) References in the following formats: +% (Author, 1986) +% (Author and Author, 1986) +% (Author et al., 1986). +% 3) Multiple references in the form (Author1, 1986; Author2, 1987) +% +% To be used as an optional argument to the \documentstyle command; for example +% \documentstyle[11pt,apalike]{book} +% +% 16-Sep-86, original version by Susan King and Oren Patashnik. +% 13-Oct-87 changes: +% Fixed bug in last line by adding the {} that disappeard when +% the \hbox{} was removed from the pre-APALIKE definition; +% added club and widow penalties; +% patched the \newblock LaTeX bug from `-.07em' to simply `.07em'; +% and made this work for document styles that don't define `chapter'. + +% 2009 Jul 13 +% OLD CODE: + +% 2009 jul 13: bibliography does not hang in cell anymore! +% Set length of hanging indentation for bibliography entries +% +%\newlength{\bibhang} +%\setlength{\bibhang}{2em} +% +% \thebibliography environment depends on whether or not `chapter's can exist +% +%\@ifundefined{chapter}{\def\thebibliography#1{\section*{References\@mkboth +% \@ifundefined{chapter}{\def\thebibliography#1{\section*{{\bf References}\@mkboth +% {REFERENCES}{REFERENCES}}\list +% {\relax}{\setlength{\labelsep}{0em} +% \setlength{\itemindent}{-\bibhang} +% \setlength{\leftmargin}{\bibhang}} +% \def\newblock{\hskip .11em plus .33em minus .07em} +% \sloppy\clubpenalty4000\widowpenalty4000 +% \sfcode`\.=1000\relax}}% +% {\def\thebibliography#1{\chapter*{Bibliography\@mkboth +% {BIBLIOGRAPHY}{BIBLIOGRAPHY}}\list +% {\relax}{\setlength{\labelsep}{0em} +% \setlength{\itemindent}{-\bibhang} +% \setlength{\leftmargin}{\bibhang}} +% \def\newblock{\hskip .11em plus .33em minus .07em} +% \sloppy\clubpenalty4000\widowpenalty4000 +% \sfcode`\.=1000\relax}} + +% `; ' goes between cites, and there's no \hbox around individual cites +% +% \def\@citex[#1]#2{\if@filesw\immediate\write\@auxout{\string\citation{#2}}\fi +% \def\@citea{}\@cite{\@for\@citeb:=#2\do +% {\@citea\def\@citea{; }\@ifundefined +% {b@\@citeb}{{\bf ?}\@warning +% {Citation `\@citeb' on page \thepage \space undefined}}% +% {\csname b@\@citeb\endcsname}}}{#1}} |