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-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex72
1 files changed, 36 insertions, 36 deletions
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
index 45be0f4ad43..14b31722ee9 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
@@ -1,5 +1,5 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Molecular Coding Format manual by Akira Yamaji 2015.9.14
+% Molecular Coding Format manual by Akira Yamaji 2015.9.16
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[a4paper]{article}
\usepackage[dvipdfmx]{graphicx}
@@ -34,7 +34,7 @@
\noindent%
\begin{picture}(180,0)
\put(20,9){{\LARGE\bf Molecular Coding Format manual}\hspace{10mm}
- by Akira Yamaji 2015.9.14}
+ by Akira Yamaji 2015.9.16}
\end{picture}\vspace{-4.2mm}\\
%----------------------------------------------------------------------------
\begin{minipage}[t][38mm]{100mm}
@@ -52,13 +52,13 @@ bold arrow is default angle and position
\begin{minipage}[t][38mm]{100mm}
\MCFtitle{Chain (2)}
\begin{verbatim}
-!,!!: take 60 or -60 depend on
+!,: take 60 or -60 depend on
current angle and enviroment
!6 (!!6)
- ** !!6: !,!,!,!,!,!
- !6: {,!!6,}
+ ** !6: !,!,!,!,!,!
+ !!6: {,!6,}
\end{verbatim}
\end{minipage}
\MCFstructure
@@ -71,8 +71,8 @@ six membered ring
?6 (??6)
- ** ??6 :^^-120,60,60,60,60,60,&(-5)
- ?6 : {,??6,}
+ ** ?6 :^^-120,60,60,60,60,60,&(-5)
+ ??6 : {,?6,}
\end{verbatim}
\end{minipage}
@@ -124,7 +124,7 @@ six membered ring
\begin{verbatim}
Bn`length : change bond length at Bn
- ^^30,!2,!2`1.2,!
+ ^^30,!2,!2`1.2,!2
\end{verbatim}
\end{minipage}
\MCFstructure
@@ -135,7 +135,7 @@ Bn`length : change bond length at Bn
\begin{verbatim}
``length : change all bond length after
- ^^30,!2,``1.2,!2,!
+ ^^30,!2,``1.2,!3
\end{verbatim}
\end{minipage}
\MCFstructure
@@ -146,7 +146,7 @@ Bn`length : change bond length at Bn
\begin{verbatim}
?n`length : change ring length
- ^^30,?6,3\,?6`1.2,4=??6
+ ^^30,?6,3\,|,?6`1.2,4=??6
\end{verbatim}
\end{minipage}
\MCFstructure
@@ -181,9 +181,8 @@ An(n:numeric): atom number
\MCFtitle{Change atom (3)}
\begin{verbatim}
2:N : change A2 C to N
-??6 do not make brock
- ?6,4\,??6,2:N
+ ?6,4\,?6,2:N
\end{verbatim}
\end{minipage}
\MCFstructure
@@ -194,8 +193,9 @@ An(n:numeric): atom number
\begin{verbatim}
2:N : change A2(brock address) C to N
-?6,4\,?6,2:N
+?6,4\,|,?6,2:N
+| : divide brock
\end{verbatim}
\end{minipage}
\MCFstructure
@@ -206,7 +206,7 @@ An(n:numeric): atom number
\begin{verbatim}
#2:N : change A#2 C to N
- ?6,4\,?6,#2:N
+ ?6,4\,|,?6,#2:N
\end{verbatim}
\end{minipage}
\MCFstructure
@@ -240,8 +240,8 @@ Bn(n:numeric): bond number
\MCFtitle{Fuse multi ring (attached 1 bond)}
\begin{verbatim}
-?6,$(3,3)?6 => OK ?6,$(3,3)??6 => NG
-?6,$(3,9)?6 => NG ?6,$(3,9)??6 => OK
+?6,$(3,3)?6 => NG ?6,$(3,3)??6 => OK
+?6,$(3,9)?6 => OK ?6,$(3,9)??6 => NG
?6,$(-4,-3)?6 => OK ?6,$(-4,-3)??6 => OK
?6,$(#3,#9)?6 => OK ?6,$(#3,#9)??6 => OK
@@ -253,13 +253,13 @@ Bn(n:numeric): bond number
\begin{minipage}[t][38mm]{100mm}
\MCFtitle{Fuse ring (attached 2 bond)}
\begin{verbatim}
-(4,11)=??6[4] : fuse 4/6 ring to B11..B4
-(4,11)=??5[3] : fuse 3/5 ring to B11..B4
-(4,11)=??4[2] : fuse 2/4 ring to B11..B4
+(4,11)=?6[4] : fuse 4/6 ring to B11..B4
+(4,11)=?5[3] : fuse 3/5 ring to B11..B4
+(4,11)=?4[2] : fuse 2/4 ring to B11..B4
- MCd(1,.7)( 0,0)(^^30,?6,$(3)??6,(11,4)=??6[4])
- MCd(1,.6)(.5,1)(^^30,?6,$(3)??6,(11,4)=??5[3])
- MCd(1,.6)( 1,0)(^^30,?6,$(3)??6,(11,4)=??4[2])
+ MCd(1,.7)( 0,0)(^^30,?6,$(3)?6,(11,4)=?6[4])
+ MCd(1,.6)(.5,1)(^^30,?6,$(3)?6,(11,4)=?5[3])
+ MCd(1,.6)( 1,0)(^^30,?6,$(3)?6,(11,4)=?4[2])
\end{verbatim}
\end{minipage}
\MCFstructure
@@ -268,13 +268,13 @@ Bn(n:numeric): bond number
\begin{minipage}[t][38mm]{100mm}
\MCFtitle{Fuse ring (attached 3,4 bond)}
\begin{verbatim}
-(16,4)=??6[3] : fuse 3/6 ring to B16..B4
-(16,4)=??5[2] : fuse 2/5 ring to B16..B4
-(21,3)=??6[2] : fuse 2/6 ring to B21..B3
+(16,4)=?6[3] : fuse 3/6 ring to B16..B4
+(16,4)=?5[2] : fuse 2/5 ring to B16..B4
+(21,3)=?6[2] : fuse 2/6 ring to B21..B3
-MCd(1,.55)(0,0)(?6,$(3,10)??6,(16,4)=??6[3])
-MCd(1,.55)(.43,1)(?6,$(3,10)??6,(16,4)=??5[2])
-MCd(1,.53)(1,0)(^^30,?6,$(2,10,15)??6,(21,3)=??6[2])
+MCd(1,.55)(0,0)(?6,$(3,10)?6,(16,4)=?6[3])
+MCd(1,.55)(.43,1)(?6,$(3,10)?6,(16,4)=?5[2])
+MCd(1,.53)(1,0)(^^30,?6,$(2,10,15)?6,(21,3)=?6[2])
\end{verbatim}
\end{minipage}
\MCFstructure
@@ -519,7 +519,7 @@ Insert user defined substructure
\begin{verbatim}
^^45,
- ?4,2:N,2=??5,-1:S,
+ ?4,2:N,2=?5,-1:S,
@(3^45,4^-45)/*H,1://O^15,
5:/*COOH^-18,@(6^35,6^-35)/Me,
4\^75,NH,!,//O,!,NH,!,Ph
@@ -533,7 +533,7 @@ Insert user defined substructure
\begin{verbatim}
^^30,
- ?6,$(-4,-2)??6,-4=??5,7=dl,
+ ?6,$(-4,-2)?6,-4=?5,7=dl,
1:*/OH,@(4,12)*/Me^60,9:*/H^60,
10:/*H^180,@(11,-1)/*H^-60,
-1\^17,/*Me,!4,/Me,!,
@@ -547,9 +547,9 @@ Insert user defined substructure
\begin{verbatim}
^^30,
- Ph,3=??6,
+ Ph,3=?6,
7:O,@(1,2,5)/Me,8:/*Me^60,6:/OH,
- 8\,!12,@(4,8)/*Me,12:/Me
+ 8\,|,!12,@(4,8)/*Me,12:/Me
\end{verbatim}
\end{minipage}
\MCFstructure
@@ -560,7 +560,7 @@ Insert user defined substructure
\begin{verbatim}
^^30,
- ?6,-4=??5,$(3,8)dl,@(2,6,7,9)N,
+ ?6,-4=?5,$(3,8)dl,@(2,6,7,9)N,
@(2,6,9)/Me,@(1,5)//O
\end{verbatim}
\end{minipage}
@@ -572,7 +572,7 @@ Insert user defined substructure
\begin{verbatim}
^^30,
- Ph,-4=??6,-2=??6,6=??5,(9,12)=??5[3],
+ Ph,-4=?6,-2=?6,6=?5,(9,12)=?5[3],
13=dl,8:N,@(15,17)O,
9:/*H^180,10:*/H^60,13:*/OH,14:/*OH
\end{verbatim}
@@ -585,7 +585,7 @@ Insert user defined substructure
\begin{verbatim}
^^12,
- ?6`1.3,3=??5,9=??7,12\^160`1.6,&8,
+ ?6`1.3,3=?5,9=?7,12\^160`1.6,&8,
4\^155~zf`1.2,O,55,//O^180`1,&2~zb,
5=dl,11=wf,13=wb,7:/COOH,11://Me,1:*/OH,
12:/*OH,2:*/Me,@(3^-60,9^60)*/H
@@ -601,7 +601,7 @@ Insert user defined substructure
font_wd#:=30mm#; %<==font width
font_ht#:=20mm#; %<==font height
sw_font_frame:=1;
- MCf(^^30,?6,-4=??5,$(3,8)dl,@(2,6,7,9)N,
+ MCf(^^30,?6,-4=?5,$(3,8)dl,@(2,6,7,9)N,
@(2,6,9)/Me,@(1,5)//O)
endfont
\end{verbatim}