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+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%% %%%%%
+%%%%% Ciliate macronuclear genetic code definitions %%%%%
+%%%%% %%%%%
+%%%%% Only exchanges compared to the standard code must be defined. %%%%%
+%%%%% %%%%%
+%%%%% (The last codon of the list is used for backtranslations %%%%%
+%%%%% from protein to DNA sequences---therefore the wobbles) %%%%%
+%%%%% %%%%%
+%%%%% %%%%%
+%%%%% Activate these definitions for your alignment by the following %%%%%
+%%%%% command in the texshade environment: %%%%%
+%%%%% %%%%%
+%%%%% \geneticcode{ciliate} %%%%%
+%%%%% %%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+\codon{Q}{TAA,TAG,UAA,UAG,YAR}