diff options
Diffstat (limited to 'Master/texmf-dist/doc/latex/texshade/AQP_HMM.ext')
-rw-r--r-- | Master/texmf-dist/doc/latex/texshade/AQP_HMM.ext | 148 |
1 files changed, 148 insertions, 0 deletions
diff --git a/Master/texmf-dist/doc/latex/texshade/AQP_HMM.ext b/Master/texmf-dist/doc/latex/texshade/AQP_HMM.ext new file mode 100644 index 00000000000..d95988ad1e3 --- /dev/null +++ b/Master/texmf-dist/doc/latex/texshade/AQP_HMM.ext @@ -0,0 +1,148 @@ + +Protein: AQP1 +Length: 269 +N-terminus: IN +Number of transmembrane helices: 6 +Transmembrane helices: 14-33 54-73 94-112 139-156 165-184 211-230 + +Total entropy of the model: 17.0025 +Entropy of the best path: 17.0049 + +The best path: + + seq MASEIKKKLF WRAVVAEFLA MTLFVFISIG SALGFNYPLE RNQTLVQDNV 50 + pred IIIIiiiiii iiiHHHHHHH HHHHHHHHHH HHHooooooo oooooooooo + + seq KVSLAFGLSI ATLAQSVGHI SGAHSNPAVT LGLLLSCQIS ILRAVMYIIA 100 + pred oooHHHHHHH HHHHHHHHHH HHHiiiiiii iiiiiiiiii iiiHHHHHHH + + seq QCVGAIVASA ILSGITSSLL ENSLGRNDLA RGVNSGQGLG IEIIGTLQLV 150 + pred HHHHHHHHHH HHoooooooo oooooooooo ooooooooHH HHHHHHHHHH + + seq LCVLATTDRR RRDLGGSAPL AIGLSVALGH LLAIDYTGCG INPARSFGSA 200 + pred HHHHHHiiii iiiiHHHHHH HHHHHHHHHH HHHHoooooo oooooooooo + + seq VLTRNFSNHW IFWVGPFIGS ALAVLIYDFI LAPRSSDFTD RMKVWTSGQV 250 + pred oooooooooo HHHHHHHHHH HHHHHHHHHH iiiiiiiiii iiiiiIIIII + + seq EEYDLDADDI NSRVEMKPK 269 + pred IIIIIIIIII IIIIIIIII + +Protein: AQP2 +Length: 271 +N-terminus: IN +Number of transmembrane helices: 6 +Transmembrane helices: 17-35 44-65 86-104 131-148 157-176 203-224 + +Total entropy of the model: 17.0017 +Entropy of the best path: 17.0046 + +The best path: + + seq MWELRSIAFS RAVLAEFLAT LLFVFFGLGS ALQWASSPPS VLQIAVAFGL 50 + pred IIIIIIiiii iiiiiiHHHH HHHHHHHHHH HHHHHooooo oooHHHHHHH + + seq GIGILVQALG HVSGAHINPA VTVACLVGCH VSFLRAAFYV AAQLLGAVAG 100 + pred HHHHHHHHHH HHHHHiiiii iiiiiiiiii iiiiiHHHHH HHHHHHHHHH + + seq AAILHEITPV EIRGDLAVNA LHNNATAGQA VTVELFLTMQ LVLCIFASTD 150 + pred HHHHoooooo oooooooooo oooooooooo HHHHHHHHHH HHHHHHHHii + + seq ERRGDNLGSP ALSIGFSVTL GHLLGIYFTG CSMNPARSLA PAVVTGKFDD 200 + pred iiiiiiHHHH HHHHHHHHHH HHHHHHoooo oooooooooo oooooooooo + + seq HWVFWIGPLV GAIIGSLLYN YLLFPSAKSL QERLAVLKGL EPDTDWEERE 250 + pred ooHHHHHHHH HHHHHHHHHH HHHHiiiiii iiiiiiiiiI IIIIIIIIII + + seq VRRRQSVELH SPQSLPRGSK A 271 + pred IIIIIIIIII IIIIIIIIII I + +Protein: AQP3 +Length: 285 +N-terminus: IN +Number of transmembrane helices: 6 +Transmembrane helices: 22-41 50-72 103-122 153-172 185-207 238-260 + +Total entropy of the model: 17.0059 +Entropy of the best path: 17.0075 + +The best path: + + seq MNRCGEMLHI RYRLLRQALA ECLGTLILVM FGCGSVAQVV LSRGTHGGFL 50 + pred IIIIIIiiii iiiiiiiiii iHHHHHHHHH HHHHHHHHHH HooooooooH + + seq TINLAFGFAV TLAILVAGQV SGAHLNPAVT FAMCFLAREP WIKLPIYTLA 100 + pred HHHHHHHHHH HHHHHHHHHH HHiiiiiiii iiiiiiiiii iiiiiiiiii + + seq QTLGAFLGAG IVFGLYYDAI WAFAGNELVV SGPNGTAGIF ATYPSGHLDM 150 + pred iiHHHHHHHH HHHHHHHHHH HHoooooooo oooooooooo oooooooooo + + seq VNGFFDQFIG TAALIVCVLA IVDPYNNPVP RGLEAFTVGL VVLVIGTSMG 200 + pred ooHHHHHHHH HHHHHHHHHH HHiiiiiiii iiiiHHHHHH HHHHHHHHHH + + seq FNSGYAVNPA RDFGPRLFTA LAGWGSEVFT TGQNWWWVPI VSPLLGSIGG 250 + pred HHHHHHHooo oooooooooo oooooooooo oooooooHHH HHHHHHHHHH + + seq VFVYQLMIGC HLEQPPPSTE AENVKLAHMK HKEQI 285 + pred HHHHHHHHHH iiiiiiiiii iiiiiIIIII IIIII + +Protein: AQP4 +Length: 323 +N-terminus: IN +Number of transmembrane helices: 6 +Transmembrane helices: 37-57 70-92 123-147 160-177 186-205 232-254 + +Total entropy of the model: 17.0058 +Entropy of the best path: 17.0091 + +The best path: + + seq MSDGAAARRW GKCGPPCSRE SIMVAFKGVW TQAFWKAVTA EFLAMLIFVL 50 + pred IIIIIIIIII IIIIIIIIII Iiiiiiiiii iiiiiiHHHH HHHHHHHHHH + + seq LSVGSTINWG GSENPLPVDM VLISLCFGLS IATMVQCFGH ISGGHINPAV 100 + pred HHHHHHHooo oooooooooH HHHHHHHHHH HHHHHHHHHH HHiiiiiiii + + seq TVAMVCTRKI SIAKSVFYIT AQCLGAIIGA GILYLVTPPS VVGGLGVTTV 150 + pred iiiiiiiiii iiiiiiiiii iiHHHHHHHH HHHHHHHHHH HHHHHHHooo + + seq HGNLTAGHGL LVELIITFQL VFTIFASCDS KRTDVTGSVA LAIGFSVAIG 200 + pred oooooooooH HHHHHHHHHH HHHHHHHiii iiiiiHHHHH HHHHHHHHHH + + seq HLFAINYTGA SMNPARSFGP AVIMGNWENH WIYWVGPIIG AVLAGALYEY 250 + pred HHHHHooooo oooooooooo oooooooooo oHHHHHHHHH HHHHHHHHHH + + seq VFCPDVELKR RLKEAFSKAA QQTKGSYMEV EDNRSQVETE DLILKPGVVH 300 + pred HHHHiiiiii iiiiiiiiiI IIIIIIIIII IIIIIIIIII IIIIIIIIII + + seq VIDIDRGDEK KGKDSSGEVL SSV 323 + pred IIIIIIIIII IIIIIIIIII III + +Protein: AQP5 +Length: 265 +N-terminus: IN +Number of transmembrane helices: 6 +Transmembrane helices: 13-32 59-78 87-110 131-149 158-177 204-228 + +Total entropy of the model: 17.0020 +Entropy of the best path: 17.0052 + +The best path: + + seq MKKEVCSLAF FKAVFAEFLA TLIFVFFGLG SALKWPSALP TILQISIAFG 50 + pred IIIIIIIIii iiHHHHHHHH HHHHHHHHHH HHoooooooo oooooooooo + + seq LAIGTLAQAL GPVSGGHINP AITLALLIGN QISLLRAVFY VAAQLVGAIA 100 + pred ooooooooHH HHHHHHHHHH HHHHHHHHii iiiiiiHHHH HHHHHHHHHH + + seq GAGILYWLAP LNARGNLAVN ALNNNTTPGK AMVVELILTF QLALCIFSST 150 + pred HHHHHHHHHH oooooooooo oooooooooo HHHHHHHHHH HHHHHHHHHi + + seq DSRRTSPVGS PALSIGLSVT LGHLVGIYFT GCSMNPARSF GPAVVMNRFS 200 + pred iiiiiiiHHH HHHHHHHHHH HHHHHHHooo oooooooooo oooooooooo + + seq PSHWVFWVGP IVGAMLAAIL YFYLLFPSSL SLHDRVAVVK GTYEPEEDWE 250 + pred oooHHHHHHH HHHHHHHHHH HHHHHHHHii iiiiiiiiii iiiIIIIIII + + seq DHREERKKTI ELTAH 265 + pred IIIIIIIIII IIIII |