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diff --git a/Master/texmf-dist/doc/latex/nih/example-biosketch.tex b/Master/texmf-dist/doc/latex/nih/example-biosketch.tex new file mode 100644 index 00000000000..f001cc4e834 --- /dev/null +++ b/Master/texmf-dist/doc/latex/nih/example-biosketch.tex @@ -0,0 +1,698 @@ +% This example file for NIH biographical sketches was originally written +% by Bruce Donald (http://www.cs.duke.edu/brd/). +% +% You may freely use, modify and/or distribute this file. +% +\documentclass[11pt]{nih} +%\documentclass[12pt]{nih-times} +% last revision: +\def\mydate{2006-09-16 17:10:33 karl} +%\usepackage[dvips]{graphicx} +%\usepackage{psfrag} +\usepackage{color} +%\usepackage{boxedminipage} +\usepackage{amsfonts} +\usepackage{denselists} + +\long\def\gobble#1{} + +\long\def\MEMS#1{} + +%Note from brd +\long\def\todo#1{} +\def\ICRA{IEEE International Conference on Robotics and Automation (ICRA)} + +\def\cbk#1{[{\em #1}]} + +\def\degree{$^\circ$} +\def\R{\mathbb{R}} +\def\Fscr{\mathcal{F}} +\def\set#1{{\{#1\}}} +\def\edge{\!\rightarrow\!} +\def\dedge{\!\leftrightarrow\!} + +\def\Jigsaw{{\sc Jigsaw}} +\def\ahelix{\ensuremath{\alpha}-helix} +\def\ahelices{\ensuremath{\alpha}-helices} +\def\ahelical{$\alpha$-helical} +\def\bstrand{\ensuremath{\beta}-strand} +\def\bstrands{\ensuremath{\beta}-strands} +\def\bsheet{\ensuremath{\beta}-sheet} +\def\bsheets{\ensuremath{\beta}-sheets} +\def\hone{\ensuremath{^1}\rm{H}} +\def\htwo{$^{2}$H} +\def\cthir{\ensuremath{^{13}}\rm{C}} +\def\nfif{\ensuremath{^{15}}\rm{N}} +\def\hn{\rm{H}\ensuremath{^\mathrm{N}}} +\def\hnone{\textup{H}\ensuremath{^1_\mathrm{N}}} +\def\ca{\rm{C}\ensuremath{^\alpha}} +\def\catwel{\ensuremath{^{12}}\rm{C}\ensuremath{^\alpha}} +\def\ha{\rm{H}\ensuremath{^\alpha}} +\def\cb{\rm{C}\ensuremath{^\beta}} +\def\hb{\rm{H}\ensuremath{^\beta}} +\def\hg{\rm{H}\ensuremath{^\gamma}} +\def\dnn{\ensuremath{d_{\mathrm{NN}}}} +\def\dan{\ensuremath{d_{\alpha \mathrm{N}}}} +\def\jconst{\ensuremath{^{3}J_{\mathrm{H}^{\mathrm{N}}\mathrm{H}^{\alpha}}}} + +\def\cbfb{CBF-$\beta$} + +\newtheorem{defn}{Definition} +\newtheorem{claim}{Claim} + +\newenvironment{closeenumerate}{\begin{list}{\arabic{enumi}.}{\topsep=0in\itemsep=0in\parsep=0in\usecounter{enumi}}}{\end{list}} +\def\CR{\hspace{0pt}} % ``invisible'' space for line break + +%\long\def\efforta mount#1{#1} +\long\def\effortamount#1{} + +\begin{document} + +%\setcounter{page}{20} % or whatever +\setcounter{page}{7} % or whatever + +%\newsec{Biographical Sketch: Bruce Randall Donald} +\def\vp{\vphantom{\Large{O}}} +\def\Vp{\vphantom{\LARGE{O}}} + + +\subsubsection*{Biographical Sketch} + +%\gobble{ + +\begin{tabular}{|l|l|} +\hline +\Vp{\sf Name} & {\sf Position Title}\\ +\hline +\Vp \ \ {\bf Bruce R.~Donald, Ph.D.} & \ + {\bf Professor of Computer Science and Biochemistry}\\ +\gobble{{\bf William and Sue Gross Professor }\\ + & \ \ \ \ \ \ {\bf of Computer Science and Biochemistry (as of 8/1/2006)}\\} +\hline +\end{tabular} + +%} + +\subsubsection*{Education/Training} + +\begin{tabular}{|l|c|c|l|} +\hline +\Vp{\sf INSTITUTION} & {\sf DEGREE} & + {\sf YEAR} & {\sf FIELD OF STUDY}\\ +\hline +\hline +\Vp Yale University & B.A. & 1980 & \\ +\hline +\Vp Massachusetts Institute of Technology & S.M.& 1984 & Electrical Engineering \& Computer Science\\ +\hline +\Vp Massachusetts Institute of Technology & Ph.D. &1987& +Computer Science\\ +\hline +\end{tabular} + +\bigskip + +\gobble{ +\noindent +\begin{Description} +\item[] +Ph.D.~Advisor: Tom\'as Lozano-P\'erez, MIT Artificial Intelligence +Laboratory and Department of Electrical Engineering \& Computer Science. +\end{Description} +} + +\subsubsection*{A. Research and Professional Experience} + +\underline{Professional Experience} + +\def\myitem{\ $\bullet$\ } + + %\def\parens#1{({#1})} +\def\parens#1{{#1}:} + +%\begin{Description} +{\myitem} \parens{1978-84} Research Analyst, +Laboratory for Computer Graphics and Spatial +Analysis, GSD, Harvard University. +{\myitem} \parens{1984} Research Staff, Artificial Intelligence Laboratory, MIT. +{\myitem} \parens{1982-1987} Graduate student, Artificial Intelligence Laboratory and Department of EECS, MIT. +{\myitem} \parens{1987-1993} Assistant Professor; +\parens{1993-1998} Associate Professor (with tenure), Computer Science Department, Cornell University. +{\myitem} \parens{1995-1996} Consultant and Contractor, Interval Research Corporation, Palo Alto, CA. +{\myitem} \parens{1994-1996} Visiting Professor, Computer Science Department, +Stanford. +{\myitem} \parens{1997-1999} Associate Professor (with tenure); + \parens{1999-2006} Professor of Computer Science, + Dartmouth College. +\gobble{{\myitem} \parens{1998} Founder, M.D.-Ph.D.~Program in Computational Biology, Dartmouth College and +Dartmouth Medical School.} +{\myitem} \parens{1999-2006} M.D.-Ph.D.~Committee, Dartmouth College and +Dartmouth Medical School. +{\myitem} \parens{2000} Conference chair, Int'l.~Workshop on Algorithmic +Foundations of Robotics. +{\myitem} 11 NSF Advisory Panels (1990-2003). +{\myitem} \parens{2000-2001} Visiting Scientist, Artificial Intelligence Laboratory and Department of EECS, MIT. +{\myitem} \parens{2000-2002} Scientific Advisory Board, Carta +Proteomics, Inc. (now ExSAR). +{\myitem} \parens{2000-2006} Member, Dartmouth Center for Structural +Biology and Computational Chemistry. +{\myitem} \parens{2000-2006} Adjunct Professor of Chemistry, Dartmouth. +{\myitem} \parens{2002-2006} Adjunct Professor of Biological Sciences, Dartmouth. +{\myitem} \parens{2002, 2004, 2005} {\em Ad hoc} Member, NIH Study Sections (BBCA, + ALY, ZRG1 CFS). +{\myitem} \parens{2003--2006} Joan and Edward Foley Professor, Dartmouth. +{\myitem}\parens{2006--now} William and Sue Gross Professor of Computer +Science, Duke University. +{\myitem}\parens{2006--now} +Professor of Biochemistry, School of Medicine, Duke University Medical Center. + +%\end{Description} + +\noindent\underline{Honors and Awards} + +%\begin{Description} + +{\myitem} \parens{1979} Phi Beta Kappa; \parens{1980} Distinction in the Major, Yale University. +{\myitem} \parens{1980} Graduated {\em Summa Cum Laude,} Yale. +{\myitem} \parens{1985-1987} NASA/JPL Graduate Student Researcher Fellowship. +{\myitem} \parens{1989-1994} NSF Presidential Young Investigator. +{\myitem} \parens{1997-2000} NSF Challenges in Computer and Information Science and Engineering Grant. +{\myitem} \parens{2001} Guggenheim Fellow, {\em +``Algorithms in Structural Proteomics."} +{\myitem} \parens{2002} Distinguished Lectures, Robert Mueller-Thuns +(Univ.~Illinois, Urbana-Champaign); Triangle (UNC Chapel Hill, Duke +\& N.C.~State). + +%\end{Description} + +\def\mystar{{$\star$}} + +%\subsubsection*{Selected Peer-reviewed Publications (from a list of +%159 total, with 28 in 2003-4). } + +\medskip + +\noindent{\bf B. Selected Peer-reviewed Publications (from a list of +176 total, with 19 in 2005--6)}\gobble{\\ {\sf Publications available online at + {\tt + www.cs.dartmouth.edu/brd/Research/Bio/}} } + +\vspace*{-0.1in} + +\gobble{{{\mystar} {\em Note: In Computer Science, certain conferences +(Marked with a $\star$) are are highly selective and rigorously +refereed, often by 3 reviewers plus the conference chairs. Conference +papers are published not as one-page abstracts, but as 8-12 page full +papers (in 10pt double-column format). For this reason, conference +papers are considered primary publications in the field. Selectivity +can be roughly quantitated by the acceptance rate.}}} + +\def\Nospacing{\itemsep=0pt\topsep=0pt\partopsep=0pt\parskip=0pt\parsep=0pt} + +\makeatletter +\def\thebibliography#1{\list +{[\arabic{enumiv}]}{\settowidth\labelwidth{[#1]}\leftmargin\labelwidth +\advance\leftmargin\labelsep +\usecounter{enumiv}\Nospacing} +\def\newblock{\hskip .11em plus .33em minus .07em} +\sloppy\clubpenalty4000\widowpenalty4000 +\sfcode`\.=1000\relax +} +\let\endthebibliography=\endlist +\makeatother + +%%%%%%% begin papers/biblio +%\begin{thebibliography}{10} + +\def\th{$^{\rm{th}}$} + +%\def\mybibitem#1#2{\bibitem{#1}{#2}} +\def\brd{B.~R. Donald} +%\def\brd{{\bf B.~R. Donald}} + +\def\mybibitem#1{\item} +\begin{Enumerate} + +%\input{papers-r01} +%% %\begin{thebibliography}{10} + +%% \def\th{$^{\rm{th}}$} + +%% %\def\mybibitem#1#2{\bibitem{#1}{#2}} + +%% \def\mybibitem#1{\item} +%% \begin{Enumerate} + +\bibitem{KapurMundyDonald92} +B.~R. Donald, D.~Kapur, and J.~Mundy. +\newblock {\em Symbolic and Numerical Computation for Artificial Intelligence}. +\newblock Academic Press, Harcourt Jovanovich, London, 1992. + +\bibitem{CannyDonaldReifXavier93} +B.~R. Donald, P.~Xavier, J.~Canny, and J.~Reif. +\newblock Kinodynamic motion planning. +\newblock {\em Journal of the ACM}, 40(5):1048--1066, 1993. + +\bibitem{jcb00-jigsaw} +C.~Bailey-Kellogg, A.~Widge, J.~J. {Kelley III}, M.~J. Berardi, J.~H. + Bushweller, and {\brd}. +\newblock The {NOESY} {Jigsaw}: Automated protein secondary structure and + main-chain assignment from sparse, unassigned {NMR} data. +\newblock {\em Jour. Comp. Biol.}, 3-4(7):537--558, 2000. + +\bibitem{jcb00-sar} +C.~Bailey-Kellogg, J.~J. {Kelley III}, C.~Stein, and {\brd}. +\newblock Reducing mass degeneracy in {SAR} by {MS} by stable isotopic + labeling. +\newblock {\em Jour. Comp. Biol.}, 8(1):19--36, 2001. + +\gobble{ +\bibitem{icra01} +C.~Bailey-Kellogg, J.~J. {Kelley III}, R.~Lilien, and {\brd}. +\newblock Physical geometric algorithms for structural molecular biology. +\newblock In {\em the Special Session on Computational Biology \& Chemistry, + {\it Proc.~{IEEE} Int'l Conf. on Robotics and Automation + ({ICRA})}}, pp.~940--947, May 2001. +} + +\bibitem{recomb01} +C.~Langmead and {\brd}. +\newblock Extracting structural information using time-frequency analysis of + protein {NMR} data. +\newblock In {\em Proc.~5{\th} Int'l.~Conf.~on + Research in Computational Molecular Biology (RECOMB)}, pp.~164--175. ACM + Press, April 2001. + +\gobble{ +\bibitem{csb02} +C.~Langmead, C.~R. McClung, and {\brd}. +\newblock A maximum entropy algorithm for rhythmic analysis of genome-wide + expression patterns. +\newblock In {\em Proc.~IEEE Computer Society Bioinformatics + Conference (IEEE CSB)}, pp.~237--245, August 2002. +} + +\bibitem{jcb-rage} +C.~Langmead, A.~Yan, C.~R. McClung, and {\brd}. +\newblock Phase-independent rhythmic analysis of genome-wide expression + patterns. +\newblock {\em Journal of Computational Biology}, 10(3-4):521--536, 2003. + +\bibitem{jcb-fld03} +R.~Lilien, H.~Farid, and {\brd}. +\newblock Probabilistic disease classification of expression-dependent + proteomic data from mass spectrometry of human serum. +\newblock {\em Journal of Computational Biology}, 10(6):925--946, 2003. + +\bibitem{recomb03} +C.~Langmead, A.~Yan, R.~Lilien, L.~Wang, and {\brd}. +\newblock A polynomial-time nuclear vector replacement algorithm for automated + {NMR} resonance assignments. +\newblock In {\em Proc.~7{\th} Int'l.~Conf.~on + Research in Computational Molecuar Biology (RECOMB)}, pp.~176--187, + Berlin, Germany, April 2003. ACM Press. + +\bibitem{ieeecsb-langmead03} +C.~Langmead and {\brd}. +\newblock 3{D} structural homology detection via unassigned residual dipolar + couplings. +\newblock In {\em Proc.~{IEEE} Computer Society Bioinformatics + Conference ({CSB})}, pp.~209--217, Stanford, Aug.~2003. + +\bibitem{oneil-jbc03} +R.~O'Neil, R.~Lilien, {\brd}, R.~Stroud, and A.~Anderson. +\newblock Phylogenetic classification of protozoa based on the structure of the + linker domain in the bifunctional enzyme, dihydrofolate reductase-thymidylate + synthase. +\newblock {\em Jour. Biol. Chem.}, 278(52):52980--52987, 2003. + +\bibitem{oneil-jem03} +R.~O'Neil, R.~Lilien, {\brd}, R.~Stroud, and A.~Anderson. +\newblock The crystal structure of dihydrofolate reductase-thymidylate synthase + from {{\em Cryptosporidium hominis}} reveals a novel architecture for the + bifunctional enzyme. +\newblock {\em Jour. Eukaryotic Microbiology}, 50(6):555--556, 2003. + +\gobble{ +\bibitem{ieeecsb03-wang} +L.~Wang, R.~Mettu, R.~Lilien, and {\brd}. +\newblock An exact algorithm for determining protein backbone structure from + {NH} residual dipolar couplings. +\newblock In {\em Proc.~{IEEE} Computer Society Bioinformatics + Conference ({CSB})}, pp.~611--612, Stanford, August 2003. +} + +\bibitem{langmead-jbnmr04} +C.~Langmead and {\brd}. +\newblock An expectation/maximization nuclear vector replacement algorithm for + automated {NMR} resonance assignments. +\newblock {\em Jour. Biomolecular {NMR}}, 29(2):111--138, 2004. + +\bibitem{wang-jbnmr03} +L.~Wang and {\brd}. +\newblock Exact solutions for internuclear vectors and backbone dihedral angles + from {NH} residual dipolar couplings in two media, and their application in a + systematic search algorithm for determining protein backbone structure. +\newblock {\em Jour. Biomolecular {NMR}}, 29(3):223--242, 2004. + +\bibitem{langmead-jcb04} +C.~Langmead, A.~Yan, R.~Lilien, L.~Wang, and {\brd}. +\newblock A polynomial-time nuclear vector replacement algorithm for automated + {NMR} resonance assignments. +\newblock {\em Jour. Comp. Biol.}, 11(2-3):277--298, 2004. + +\bibitem{recomb-04} +R.~Lilien, B.~Stevens, A.~Anderson, and {\brd}. +\newblock A novel ensemble-based scoring and search algorithm for protein + redesign, and its application to modify the substrate specificity of the + gramicidin synthetase {A} phenylalanine adenylation enzyme. +\newblock In {\em Proc.~Eighth Annual International Conference on + Research in Computational Molecular Biology ({RECOMB})}, pp.~46--57, San + Diego, March 2004. + +\bibitem{lilien-acd04} +R.~Lilien, C.~Bailey-Kellogg, A.~Anderson, and {\brd}. +\newblock {A subgroup algorithm to identify cross-rotation peaks consistent + with non-crystallographic symmetry}. +\newblock {\em Acta Crystallographica Section D: Biological Crystallography}, + 60(6):1057--1067, Jun 2004. + +\bibitem{LangmeadDonald-csb04} +C.~Langmead and {\brd}. +\newblock High-throughput 3{D} structural homology detection via {NMR} + resonance assignment. +\newblock In {\em Proc.~{IEEE} Computational Systems + Bioinformatics Conference ({CSB})}, pp.~278--289, Stanford, CA, August + 2004. + +\gobble{ +\bibitem{Dartmouth:TR2004-492} +R.~Lilien, M.~Sridharan, and {\brd}. +\newblock {Identification of Novel Small Molecule Inhibitors of Core-Binding + Factor Dimerization by Computational Screening against NMR Molecular + Ensembles}. +\newblock Technical Report TR2004-492, Dartmouth College, Computer Science, + Hanover, NH, March 2004. +} + +\bibitem{WangDonald-csb04} +L.~Wang and {\brd}. +\newblock Analysis of a systematic search-based algorithm for determining + protein backbone structure from a minimal number of residual dipolar + couplings. +\newblock In {\em Proc.~{IEEE} Computational Systems + Bioinformatics Conference ({CSB})}, pp.~319--330, Stanford, CA, August + 2004. + +\bibitem{ismb05} +R.~Mettu, R.~Lilien, and B.~R. Donald. +\newblock High-throughput inference of protein-protein interfaces from + unassigned {NMR} data. +\newblock {\em Bioinformatics}, 2005; {\bf{21}}(Suppl.~1):i292--i301. +\gobble{special issue from papers presented at the 2005 Int'l.~Conf.~on +Intelligent Systems for Molecular Biology, Detroit, MI) } + +\mybibitem{jcb04-NRPS} +R.~Lilien, B.~Stevens, A.~Anderson, and {\brd}. +\newblock A novel ensemble-based scoring and search algorithm for protein + redesign, and its application to modify the substrate specificity of the + gramicidin synthetase {A} phenylalanine adenylation enzyme. +\newblock {\em Journal of Computational Biology} 2005; {\bf{12}}(6-7):740--761. + +\mybibitem{csb05-noe} +L.~Wang and B.~R. Donald. +\newblock An efficient and accurate algorithm for assigning nuclear + {Overhauser} effect restraints using a rotamer library ensemble and residual + dipolar couplings. +\newblock In {\em Proceedings of the {IEEE} Computational Systems + Bioinformatics Conference ({CSB})}, pp.~189--202, +Stanford, CA, August 2005. + +\mybibitem{csb05-poly} +L.~Wang, R.~Mettu, and B.~R. Donald. +\newblock An algebraic geometry approach to protein backbone structure + determination from {NMR} data. +\newblock In {\em Proceedings of the {IEEE} Computational Systems + Bioinformatics Conference ({CSB})}, pp.~235--246, Stanford, CA, +August 2005. + +\gobble{ +\mybibitem{recomb-06} +I.~Georgiev, R.~Lilien, and B.~R. Donald. +\newblock A novel minimized dead-end elimination criterion and its application + to protein redesign in a hybrid scoring and search algorithm for computing + partition functions over molecular ensembles. +\newblock In {\em Proc.~Tenth Ann.~Intl.~Conf.~on + Research in Computational Molecular Biology (RECOMB)}, pp. 530--545, + Venice, Italy, April 2006. Springer Berlin, Lecture Notes in + Computer Science, LNBI 3909. +} + +\bibitem{ismb06} +I.~Georgiev, R.~Lilien, and B.~R. Donald. +\newblock Improved pruning algorithms and divide-and-conquer strategies for + dead-end elimination, with application to protein design. +\newblock {\em Bioinformatics} 2006; {\bf{22}}(14):e174--183. +\newblock Special issue on papers from the Int'l Conf. on Intelligent + Sys. for Mol. Biol. ({ISMB 2006}), Fortaleza, Brazil. + +\bibitem{csb06} +L.~Wang and B.~R. Donald. +\newblock A data-driven, systematic search algorithm for structure + determination of denatured or disordered proteins. +\newblock In {\em Proceedings of the LSS Computational Systems Bioinformatics + Conference ({CSB})}, Stanford, CA, August 2006. + Pages 67-78. ISBN 1-86094-700-X. + +\bibitem{jcb-poly06} +L.~Wang, R.~Mettu, and B.~R. Donald. +\newblock A polynomial-time algorithm for {\em de novo} protein backbone + structure determination from {NMR} data. +\newblock {\em Journal of Computational Biology}, 2006. +\newblock In press. + +\bibitem{proteins06} +S.~Potluri, A.~Yan, B.~R. Donald, and C.~Bailey-Kellogg. +\newblock Structure determination of symmetric homo-oligomers by a complete + search of symmetry configuration space using {NMR} restraints and van der + {Waals} packing. +\newblock {\em Proteins: Structure, Function and Bioinformatics}, + 2006; 65(1):203--219. + +%\end{Enumerate} + +%\end{thebibliography} + +\end{Enumerate} + +%\end{thebibliography} +%%%%%%% endpapers/biblio + + +%\input{papers} +%\input{papers2} + +\MEMS{Change URL} + +\gobble{ +\begin{center} +{\sf Publications available online at {\tt www.cs.dartmouth.edu/\lower1.50ex\hbox{\LARGE{\~{}}}brd/Research/Bio/}} +\end{center} +} + +%\newpage +%\setcounter{page}{1} % or whatever + +\subsection*{C. Research Projects and Funding} + +\subsection*{CURRENT SUPPORT} + +\def\myhrule{\smallskip\hrule\smallskip} + +\myhrule +\noindent \begin{tabular}{ll} +DONALD, BRUCE R. & ONGOING\\ + (PI: Donald) & 2002-2007 \\ + NIH/NIGMS & R01 GM-65982\\ +{\em Automated NMR Assignment and Protein Structure}\\ +\effortamount{\$150,000 &\\} +\end{tabular} + +The long-term objective of this project is the development of new +computational methods for biomolecular NMR, to be applied in +structural genomics. Two main foci are novel algorithms for automated +assignments, and algorithms for automated structure determination from +solution-state protein NMR. + +\myhrule +\noindent \begin{tabular}{ll} +DONALD, BRUCE R.& ONGOING \\ +(PI: A. Anderson, Co-investigator: B. Donald) & 2003-2008\\ +NIH (NIGMS \& NIAID) & +R01 GM-067542 \\ +{\em Design of C.~parvum and T.~gondii DHFR-TS Inhibitors}\\ +\effortamount{\$150,000 {(total); Donald sub only: \$11,000.} & \\} +\end{tabular} + +The major goal of this project is to design selective and potent +inhibitors against the dihydrofolate reductase (DHFR) domain of +dihydrofolate reductase-thymidylate synthase (DHFR-TS) from +{\em Cryptosporidium hominis} and {\em Toxoplasma gondii. } + +\myhrule + +\subsection*{Completed Research Support} + +\myhrule +\noindent +\begin{tabular}{ll} +DONALD, BRUCE R. & COMPLETED\\ + (PI: Donald) & 2003-2005 \\ + NSF & EIA-0305444\\ +{\em Algorithmic Challenges in Computational Biology}\\ +\effortamount{ \$37,500 &\\} +\end{tabular} + +This grant supported computational research in functional genomics and +computational methods in NMR structural biology. + +%\myhrule + +%\newpage + +\myhrule + +\noindent +\begin{tabular}{ll} +DONALD, BRUCE R. & COMPLETED\\ + (co-PI: B.~Donald) & 1998-2003 \\ + NSF & NSF 98-02068 \\ +\end{tabular} + +{\em Systems Science for Physical Geometric Algorithms} + + +NSF research infrastructure grant. The major goals of this project +were to provide research infrastructure for computational science and +computational biology in the Computer Science Department. This +includes workstations, supercomputing facilities, networking, etc. + +\myhrule + +\newpage + +\myhrule + +\noindent +\begin{tabular}{ll} +DONALD, BRUCE R. & COMPLETED\\ + (PI: Donald) & 2001-2003 \\ + NSF & EIA-0102710\\ +\end{tabular} + +{\em Physical Geometric Algorithms and Systems for + High-Throughput NMR Structural Biology} + + The major goals of this project were to +develop novel computational methods for biomolecular NMR. + +\myhrule + + +\noindent +\begin{tabular}{ll} +DONALD, BRUCE R. & COMPLETED\\ + (PI: Donald) & 2001-2003 \\ + NSF & EIA-0102712\\ +\end{tabular} + +{\em Physical Geometric Algorithms and Systems for + Structural Biology using Mass Spectrometry} + +The major goals of this project were to +develop novel computational methods for structural mass +spectrometry and proteomics. + +\myhrule + +\noindent +\begin{tabular}{ll} +DONALD, BRUCE R. & COMPLETED\\ + (PI: Donald) & 2000-2006 \\ + DHS/ODP & 2000-DT-CX-K001 +\end{tabular} + +{\em Microelectromechanical Systems for Infosecurity} + + +The major goal of this project was the development of novel +microelectromechanical systems ("MEMS") to be useful in micro- and +nano-technology applications for homeland security, in particular, +information security and micro robotics. + +\myhrule + + + +\subsection*{PENDING SUPPORT} + + +\myhrule +\noindent \begin{tabular}{ll} DONALD, BRUCE R.& PENDING \\ + (PI: D. Madden, Co-investigator: B. Donald) & 2007-2012\\ +Submitted to NIH (NIDDK) & R01 Application \\ + {\em Keeping CFTR in its +Place: An Integrated Small-Molecule Approach}\\ +\end{tabular} + +The major goal of this project is to develop an integrated +experimental and theoretical approach to identifying small-molecule +inhibitors selective for the CAL PDZ domain (a molecular scaffolding +protein), which interacts with the cytoplasmic C-terminus of the +cystic fibrosis transmembrane conductance regulator protein (CFTR). + + +\myhrule +\noindent \begin{tabular}{ll} DONALD, BRUCE R.& PENDING \\ + (PI: J. Hoch, Co-PIs: B. Donald, G. Wagner, A. Alexandrescu, + P. Bolton) & 2006-2008\\ +Submitted to NSF & MRI application \\ +{\em Acquisition of a High Perfomance Computational +Resource for NMR Structural Biology}.&\\ +\end{tabular} + +The major goal of this project is the acquisition of a supercomputer +that will be attached to a high field NMR spectrometer in order to +facilitate the development of data-directed high-throughput +computational protocols for NMR data processing, automated assignment, +and structure determination. + +\myhrule + +\noindent \begin{tabular}{ll} DONALD, BRUCE R.& PENDING \\ + (PI: B. Donald) & 2007-2012\\ +Submitted to NIH (NIGMS) & R01 Application \\ + {\em Computational Active-Site Redesign and Binding Prediction via Molecular Ensembles}\\ +\end{tabular} + +The major goal of this project is to develop novel algorithms to plan +structure-based site-directed mutations to a protein's active site in +order to modify its function. The new algorithms will make progress +towards the long-term objective of reprogramming the specificity of +non-ribosomal peptide synthetase domains, whose products include +natural antibiotics, antifungals, antivirals, immunosuppressants, and +antineoplastics. + + +\myhrule + + +\end{document} + +%%% Local Variables: +%%% write-file-hooks: (time-stamp) +%%% time-stamp-active: t +%%% time-stamp-start: "\\\\def\\\\mydate{" +%%% time-stamp-end: "}" +%%% time-stamp-line-limit: 20 +%%% End: |