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diff --git a/Build/tools/tpm-ctan-check b/Build/tools/tpm-ctan-check index 59c514e3b0c..bc2ac211a4c 100755 --- a/Build/tools/tpm-ctan-check +++ b/Build/tools/tpm-ctan-check @@ -71,7 +71,7 @@ sub main memoir mentis metauml mfpic mhchem minipage-marginpar minitoc microtype minitoc mla-paper moderncv movie15 munich muthesis - nag natbib ncclatex ncctools newlfm noitcrul + nag natbib ncclatex ncctools newlfm nih noitcrul nomencl nomentbl ntheorem-vn numprint oberdiek ocr-latex octavo opcit pauldoc pdf-trans pdfcprot pdfpages pdftex-def perception diff --git a/Master/texmf-dist/doc/latex/nih/README b/Master/texmf-dist/doc/latex/nih/README new file mode 100644 index 00000000000..607d588c29c --- /dev/null +++ b/Master/texmf-dist/doc/latex/nih/README @@ -0,0 +1,14 @@ +nih.cls provides a class for grant applications to NIH, the National +Institutes of Health, a US government agency. + +The example-* files provide a template for using nih.cls and submitting +the biographical sketches the NIH wants. They (potentially) use +denselists.sty, which just reduces list spacing; this is not part of the +class proper. + +These files were originally created and are still maintained by Bruce +Donald. For more information, please see the author's web sites at +http://www.cs.dartmouth.edu/brd/NIH/tips and http://www.cs.duke.edu/brd. + +All of these files are freely redistributable, see each for details. +(You may freely use, modify and/or distribute this README itself, too.) diff --git a/Master/texmf-dist/doc/latex/nih/example-biosketch.pdf b/Master/texmf-dist/doc/latex/nih/example-biosketch.pdf Binary files differnew file mode 100644 index 00000000000..1ebe5214ca9 --- /dev/null +++ b/Master/texmf-dist/doc/latex/nih/example-biosketch.pdf diff --git a/Master/texmf-dist/doc/latex/nih/example-biosketch.tex b/Master/texmf-dist/doc/latex/nih/example-biosketch.tex new file mode 100644 index 00000000000..f001cc4e834 --- /dev/null +++ b/Master/texmf-dist/doc/latex/nih/example-biosketch.tex @@ -0,0 +1,698 @@ +% This example file for NIH biographical sketches was originally written +% by Bruce Donald (http://www.cs.duke.edu/brd/). +% +% You may freely use, modify and/or distribute this file. +% +\documentclass[11pt]{nih} +%\documentclass[12pt]{nih-times} +% last revision: +\def\mydate{2006-09-16 17:10:33 karl} +%\usepackage[dvips]{graphicx} +%\usepackage{psfrag} +\usepackage{color} +%\usepackage{boxedminipage} +\usepackage{amsfonts} +\usepackage{denselists} + +\long\def\gobble#1{} + +\long\def\MEMS#1{} + +%Note from brd +\long\def\todo#1{} +\def\ICRA{IEEE International Conference on Robotics and Automation (ICRA)} + +\def\cbk#1{[{\em #1}]} + +\def\degree{$^\circ$} +\def\R{\mathbb{R}} +\def\Fscr{\mathcal{F}} +\def\set#1{{\{#1\}}} +\def\edge{\!\rightarrow\!} +\def\dedge{\!\leftrightarrow\!} + +\def\Jigsaw{{\sc Jigsaw}} +\def\ahelix{\ensuremath{\alpha}-helix} +\def\ahelices{\ensuremath{\alpha}-helices} +\def\ahelical{$\alpha$-helical} +\def\bstrand{\ensuremath{\beta}-strand} +\def\bstrands{\ensuremath{\beta}-strands} +\def\bsheet{\ensuremath{\beta}-sheet} +\def\bsheets{\ensuremath{\beta}-sheets} +\def\hone{\ensuremath{^1}\rm{H}} +\def\htwo{$^{2}$H} +\def\cthir{\ensuremath{^{13}}\rm{C}} +\def\nfif{\ensuremath{^{15}}\rm{N}} +\def\hn{\rm{H}\ensuremath{^\mathrm{N}}} +\def\hnone{\textup{H}\ensuremath{^1_\mathrm{N}}} +\def\ca{\rm{C}\ensuremath{^\alpha}} +\def\catwel{\ensuremath{^{12}}\rm{C}\ensuremath{^\alpha}} +\def\ha{\rm{H}\ensuremath{^\alpha}} +\def\cb{\rm{C}\ensuremath{^\beta}} +\def\hb{\rm{H}\ensuremath{^\beta}} +\def\hg{\rm{H}\ensuremath{^\gamma}} +\def\dnn{\ensuremath{d_{\mathrm{NN}}}} +\def\dan{\ensuremath{d_{\alpha \mathrm{N}}}} +\def\jconst{\ensuremath{^{3}J_{\mathrm{H}^{\mathrm{N}}\mathrm{H}^{\alpha}}}} + +\def\cbfb{CBF-$\beta$} + +\newtheorem{defn}{Definition} +\newtheorem{claim}{Claim} + +\newenvironment{closeenumerate}{\begin{list}{\arabic{enumi}.}{\topsep=0in\itemsep=0in\parsep=0in\usecounter{enumi}}}{\end{list}} +\def\CR{\hspace{0pt}} % ``invisible'' space for line break + +%\long\def\efforta mount#1{#1} +\long\def\effortamount#1{} + +\begin{document} + +%\setcounter{page}{20} % or whatever +\setcounter{page}{7} % or whatever + +%\newsec{Biographical Sketch: Bruce Randall Donald} +\def\vp{\vphantom{\Large{O}}} +\def\Vp{\vphantom{\LARGE{O}}} + + +\subsubsection*{Biographical Sketch} + +%\gobble{ + +\begin{tabular}{|l|l|} +\hline +\Vp{\sf Name} & {\sf Position Title}\\ +\hline +\Vp \ \ {\bf Bruce R.~Donald, Ph.D.} & \ + {\bf Professor of Computer Science and Biochemistry}\\ +\gobble{{\bf William and Sue Gross Professor }\\ + & \ \ \ \ \ \ {\bf of Computer Science and Biochemistry (as of 8/1/2006)}\\} +\hline +\end{tabular} + +%} + +\subsubsection*{Education/Training} + +\begin{tabular}{|l|c|c|l|} +\hline +\Vp{\sf INSTITUTION} & {\sf DEGREE} & + {\sf YEAR} & {\sf FIELD OF STUDY}\\ +\hline +\hline +\Vp Yale University & B.A. & 1980 & \\ +\hline +\Vp Massachusetts Institute of Technology & S.M.& 1984 & Electrical Engineering \& Computer Science\\ +\hline +\Vp Massachusetts Institute of Technology & Ph.D. &1987& +Computer Science\\ +\hline +\end{tabular} + +\bigskip + +\gobble{ +\noindent +\begin{Description} +\item[] +Ph.D.~Advisor: Tom\'as Lozano-P\'erez, MIT Artificial Intelligence +Laboratory and Department of Electrical Engineering \& Computer Science. +\end{Description} +} + +\subsubsection*{A. Research and Professional Experience} + +\underline{Professional Experience} + +\def\myitem{\ $\bullet$\ } + + %\def\parens#1{({#1})} +\def\parens#1{{#1}:} + +%\begin{Description} +{\myitem} \parens{1978-84} Research Analyst, +Laboratory for Computer Graphics and Spatial +Analysis, GSD, Harvard University. +{\myitem} \parens{1984} Research Staff, Artificial Intelligence Laboratory, MIT. +{\myitem} \parens{1982-1987} Graduate student, Artificial Intelligence Laboratory and Department of EECS, MIT. +{\myitem} \parens{1987-1993} Assistant Professor; +\parens{1993-1998} Associate Professor (with tenure), Computer Science Department, Cornell University. +{\myitem} \parens{1995-1996} Consultant and Contractor, Interval Research Corporation, Palo Alto, CA. +{\myitem} \parens{1994-1996} Visiting Professor, Computer Science Department, +Stanford. +{\myitem} \parens{1997-1999} Associate Professor (with tenure); + \parens{1999-2006} Professor of Computer Science, + Dartmouth College. +\gobble{{\myitem} \parens{1998} Founder, M.D.-Ph.D.~Program in Computational Biology, Dartmouth College and +Dartmouth Medical School.} +{\myitem} \parens{1999-2006} M.D.-Ph.D.~Committee, Dartmouth College and +Dartmouth Medical School. +{\myitem} \parens{2000} Conference chair, Int'l.~Workshop on Algorithmic +Foundations of Robotics. +{\myitem} 11 NSF Advisory Panels (1990-2003). +{\myitem} \parens{2000-2001} Visiting Scientist, Artificial Intelligence Laboratory and Department of EECS, MIT. +{\myitem} \parens{2000-2002} Scientific Advisory Board, Carta +Proteomics, Inc. (now ExSAR). +{\myitem} \parens{2000-2006} Member, Dartmouth Center for Structural +Biology and Computational Chemistry. +{\myitem} \parens{2000-2006} Adjunct Professor of Chemistry, Dartmouth. +{\myitem} \parens{2002-2006} Adjunct Professor of Biological Sciences, Dartmouth. +{\myitem} \parens{2002, 2004, 2005} {\em Ad hoc} Member, NIH Study Sections (BBCA, + ALY, ZRG1 CFS). +{\myitem} \parens{2003--2006} Joan and Edward Foley Professor, Dartmouth. +{\myitem}\parens{2006--now} William and Sue Gross Professor of Computer +Science, Duke University. +{\myitem}\parens{2006--now} +Professor of Biochemistry, School of Medicine, Duke University Medical Center. + +%\end{Description} + +\noindent\underline{Honors and Awards} + +%\begin{Description} + +{\myitem} \parens{1979} Phi Beta Kappa; \parens{1980} Distinction in the Major, Yale University. +{\myitem} \parens{1980} Graduated {\em Summa Cum Laude,} Yale. +{\myitem} \parens{1985-1987} NASA/JPL Graduate Student Researcher Fellowship. +{\myitem} \parens{1989-1994} NSF Presidential Young Investigator. +{\myitem} \parens{1997-2000} NSF Challenges in Computer and Information Science and Engineering Grant. +{\myitem} \parens{2001} Guggenheim Fellow, {\em +``Algorithms in Structural Proteomics."} +{\myitem} \parens{2002} Distinguished Lectures, Robert Mueller-Thuns +(Univ.~Illinois, Urbana-Champaign); Triangle (UNC Chapel Hill, Duke +\& N.C.~State). + +%\end{Description} + +\def\mystar{{$\star$}} + +%\subsubsection*{Selected Peer-reviewed Publications (from a list of +%159 total, with 28 in 2003-4). } + +\medskip + +\noindent{\bf B. Selected Peer-reviewed Publications (from a list of +176 total, with 19 in 2005--6)}\gobble{\\ {\sf Publications available online at + {\tt + www.cs.dartmouth.edu/brd/Research/Bio/}} } + +\vspace*{-0.1in} + +\gobble{{{\mystar} {\em Note: In Computer Science, certain conferences +(Marked with a $\star$) are are highly selective and rigorously +refereed, often by 3 reviewers plus the conference chairs. Conference +papers are published not as one-page abstracts, but as 8-12 page full +papers (in 10pt double-column format). For this reason, conference +papers are considered primary publications in the field. Selectivity +can be roughly quantitated by the acceptance rate.}}} + +\def\Nospacing{\itemsep=0pt\topsep=0pt\partopsep=0pt\parskip=0pt\parsep=0pt} + +\makeatletter +\def\thebibliography#1{\list +{[\arabic{enumiv}]}{\settowidth\labelwidth{[#1]}\leftmargin\labelwidth +\advance\leftmargin\labelsep +\usecounter{enumiv}\Nospacing} +\def\newblock{\hskip .11em plus .33em minus .07em} +\sloppy\clubpenalty4000\widowpenalty4000 +\sfcode`\.=1000\relax +} +\let\endthebibliography=\endlist +\makeatother + +%%%%%%% begin papers/biblio +%\begin{thebibliography}{10} + +\def\th{$^{\rm{th}}$} + +%\def\mybibitem#1#2{\bibitem{#1}{#2}} +\def\brd{B.~R. Donald} +%\def\brd{{\bf B.~R. Donald}} + +\def\mybibitem#1{\item} +\begin{Enumerate} + +%\input{papers-r01} +%% %\begin{thebibliography}{10} + +%% \def\th{$^{\rm{th}}$} + +%% %\def\mybibitem#1#2{\bibitem{#1}{#2}} + +%% \def\mybibitem#1{\item} +%% \begin{Enumerate} + +\bibitem{KapurMundyDonald92} +B.~R. Donald, D.~Kapur, and J.~Mundy. +\newblock {\em Symbolic and Numerical Computation for Artificial Intelligence}. +\newblock Academic Press, Harcourt Jovanovich, London, 1992. + +\bibitem{CannyDonaldReifXavier93} +B.~R. Donald, P.~Xavier, J.~Canny, and J.~Reif. +\newblock Kinodynamic motion planning. +\newblock {\em Journal of the ACM}, 40(5):1048--1066, 1993. + +\bibitem{jcb00-jigsaw} +C.~Bailey-Kellogg, A.~Widge, J.~J. {Kelley III}, M.~J. Berardi, J.~H. + Bushweller, and {\brd}. +\newblock The {NOESY} {Jigsaw}: Automated protein secondary structure and + main-chain assignment from sparse, unassigned {NMR} data. +\newblock {\em Jour. Comp. Biol.}, 3-4(7):537--558, 2000. + +\bibitem{jcb00-sar} +C.~Bailey-Kellogg, J.~J. {Kelley III}, C.~Stein, and {\brd}. +\newblock Reducing mass degeneracy in {SAR} by {MS} by stable isotopic + labeling. +\newblock {\em Jour. Comp. Biol.}, 8(1):19--36, 2001. + +\gobble{ +\bibitem{icra01} +C.~Bailey-Kellogg, J.~J. {Kelley III}, R.~Lilien, and {\brd}. +\newblock Physical geometric algorithms for structural molecular biology. +\newblock In {\em the Special Session on Computational Biology \& Chemistry, + {\it Proc.~{IEEE} Int'l Conf. on Robotics and Automation + ({ICRA})}}, pp.~940--947, May 2001. +} + +\bibitem{recomb01} +C.~Langmead and {\brd}. +\newblock Extracting structural information using time-frequency analysis of + protein {NMR} data. +\newblock In {\em Proc.~5{\th} Int'l.~Conf.~on + Research in Computational Molecular Biology (RECOMB)}, pp.~164--175. ACM + Press, April 2001. + +\gobble{ +\bibitem{csb02} +C.~Langmead, C.~R. McClung, and {\brd}. +\newblock A maximum entropy algorithm for rhythmic analysis of genome-wide + expression patterns. +\newblock In {\em Proc.~IEEE Computer Society Bioinformatics + Conference (IEEE CSB)}, pp.~237--245, August 2002. +} + +\bibitem{jcb-rage} +C.~Langmead, A.~Yan, C.~R. McClung, and {\brd}. +\newblock Phase-independent rhythmic analysis of genome-wide expression + patterns. +\newblock {\em Journal of Computational Biology}, 10(3-4):521--536, 2003. + +\bibitem{jcb-fld03} +R.~Lilien, H.~Farid, and {\brd}. +\newblock Probabilistic disease classification of expression-dependent + proteomic data from mass spectrometry of human serum. +\newblock {\em Journal of Computational Biology}, 10(6):925--946, 2003. + +\bibitem{recomb03} +C.~Langmead, A.~Yan, R.~Lilien, L.~Wang, and {\brd}. +\newblock A polynomial-time nuclear vector replacement algorithm for automated + {NMR} resonance assignments. +\newblock In {\em Proc.~7{\th} Int'l.~Conf.~on + Research in Computational Molecuar Biology (RECOMB)}, pp.~176--187, + Berlin, Germany, April 2003. ACM Press. + +\bibitem{ieeecsb-langmead03} +C.~Langmead and {\brd}. +\newblock 3{D} structural homology detection via unassigned residual dipolar + couplings. +\newblock In {\em Proc.~{IEEE} Computer Society Bioinformatics + Conference ({CSB})}, pp.~209--217, Stanford, Aug.~2003. + +\bibitem{oneil-jbc03} +R.~O'Neil, R.~Lilien, {\brd}, R.~Stroud, and A.~Anderson. +\newblock Phylogenetic classification of protozoa based on the structure of the + linker domain in the bifunctional enzyme, dihydrofolate reductase-thymidylate + synthase. +\newblock {\em Jour. Biol. Chem.}, 278(52):52980--52987, 2003. + +\bibitem{oneil-jem03} +R.~O'Neil, R.~Lilien, {\brd}, R.~Stroud, and A.~Anderson. +\newblock The crystal structure of dihydrofolate reductase-thymidylate synthase + from {{\em Cryptosporidium hominis}} reveals a novel architecture for the + bifunctional enzyme. +\newblock {\em Jour. Eukaryotic Microbiology}, 50(6):555--556, 2003. + +\gobble{ +\bibitem{ieeecsb03-wang} +L.~Wang, R.~Mettu, R.~Lilien, and {\brd}. +\newblock An exact algorithm for determining protein backbone structure from + {NH} residual dipolar couplings. +\newblock In {\em Proc.~{IEEE} Computer Society Bioinformatics + Conference ({CSB})}, pp.~611--612, Stanford, August 2003. +} + +\bibitem{langmead-jbnmr04} +C.~Langmead and {\brd}. +\newblock An expectation/maximization nuclear vector replacement algorithm for + automated {NMR} resonance assignments. +\newblock {\em Jour. Biomolecular {NMR}}, 29(2):111--138, 2004. + +\bibitem{wang-jbnmr03} +L.~Wang and {\brd}. +\newblock Exact solutions for internuclear vectors and backbone dihedral angles + from {NH} residual dipolar couplings in two media, and their application in a + systematic search algorithm for determining protein backbone structure. +\newblock {\em Jour. Biomolecular {NMR}}, 29(3):223--242, 2004. + +\bibitem{langmead-jcb04} +C.~Langmead, A.~Yan, R.~Lilien, L.~Wang, and {\brd}. +\newblock A polynomial-time nuclear vector replacement algorithm for automated + {NMR} resonance assignments. +\newblock {\em Jour. Comp. Biol.}, 11(2-3):277--298, 2004. + +\bibitem{recomb-04} +R.~Lilien, B.~Stevens, A.~Anderson, and {\brd}. +\newblock A novel ensemble-based scoring and search algorithm for protein + redesign, and its application to modify the substrate specificity of the + gramicidin synthetase {A} phenylalanine adenylation enzyme. +\newblock In {\em Proc.~Eighth Annual International Conference on + Research in Computational Molecular Biology ({RECOMB})}, pp.~46--57, San + Diego, March 2004. + +\bibitem{lilien-acd04} +R.~Lilien, C.~Bailey-Kellogg, A.~Anderson, and {\brd}. +\newblock {A subgroup algorithm to identify cross-rotation peaks consistent + with non-crystallographic symmetry}. +\newblock {\em Acta Crystallographica Section D: Biological Crystallography}, + 60(6):1057--1067, Jun 2004. + +\bibitem{LangmeadDonald-csb04} +C.~Langmead and {\brd}. +\newblock High-throughput 3{D} structural homology detection via {NMR} + resonance assignment. +\newblock In {\em Proc.~{IEEE} Computational Systems + Bioinformatics Conference ({CSB})}, pp.~278--289, Stanford, CA, August + 2004. + +\gobble{ +\bibitem{Dartmouth:TR2004-492} +R.~Lilien, M.~Sridharan, and {\brd}. +\newblock {Identification of Novel Small Molecule Inhibitors of Core-Binding + Factor Dimerization by Computational Screening against NMR Molecular + Ensembles}. +\newblock Technical Report TR2004-492, Dartmouth College, Computer Science, + Hanover, NH, March 2004. +} + +\bibitem{WangDonald-csb04} +L.~Wang and {\brd}. +\newblock Analysis of a systematic search-based algorithm for determining + protein backbone structure from a minimal number of residual dipolar + couplings. +\newblock In {\em Proc.~{IEEE} Computational Systems + Bioinformatics Conference ({CSB})}, pp.~319--330, Stanford, CA, August + 2004. + +\bibitem{ismb05} +R.~Mettu, R.~Lilien, and B.~R. Donald. +\newblock High-throughput inference of protein-protein interfaces from + unassigned {NMR} data. +\newblock {\em Bioinformatics}, 2005; {\bf{21}}(Suppl.~1):i292--i301. +\gobble{special issue from papers presented at the 2005 Int'l.~Conf.~on +Intelligent Systems for Molecular Biology, Detroit, MI) } + +\mybibitem{jcb04-NRPS} +R.~Lilien, B.~Stevens, A.~Anderson, and {\brd}. +\newblock A novel ensemble-based scoring and search algorithm for protein + redesign, and its application to modify the substrate specificity of the + gramicidin synthetase {A} phenylalanine adenylation enzyme. +\newblock {\em Journal of Computational Biology} 2005; {\bf{12}}(6-7):740--761. + +\mybibitem{csb05-noe} +L.~Wang and B.~R. Donald. +\newblock An efficient and accurate algorithm for assigning nuclear + {Overhauser} effect restraints using a rotamer library ensemble and residual + dipolar couplings. +\newblock In {\em Proceedings of the {IEEE} Computational Systems + Bioinformatics Conference ({CSB})}, pp.~189--202, +Stanford, CA, August 2005. + +\mybibitem{csb05-poly} +L.~Wang, R.~Mettu, and B.~R. Donald. +\newblock An algebraic geometry approach to protein backbone structure + determination from {NMR} data. +\newblock In {\em Proceedings of the {IEEE} Computational Systems + Bioinformatics Conference ({CSB})}, pp.~235--246, Stanford, CA, +August 2005. + +\gobble{ +\mybibitem{recomb-06} +I.~Georgiev, R.~Lilien, and B.~R. Donald. +\newblock A novel minimized dead-end elimination criterion and its application + to protein redesign in a hybrid scoring and search algorithm for computing + partition functions over molecular ensembles. +\newblock In {\em Proc.~Tenth Ann.~Intl.~Conf.~on + Research in Computational Molecular Biology (RECOMB)}, pp. 530--545, + Venice, Italy, April 2006. Springer Berlin, Lecture Notes in + Computer Science, LNBI 3909. +} + +\bibitem{ismb06} +I.~Georgiev, R.~Lilien, and B.~R. Donald. +\newblock Improved pruning algorithms and divide-and-conquer strategies for + dead-end elimination, with application to protein design. +\newblock {\em Bioinformatics} 2006; {\bf{22}}(14):e174--183. +\newblock Special issue on papers from the Int'l Conf. on Intelligent + Sys. for Mol. Biol. ({ISMB 2006}), Fortaleza, Brazil. + +\bibitem{csb06} +L.~Wang and B.~R. Donald. +\newblock A data-driven, systematic search algorithm for structure + determination of denatured or disordered proteins. +\newblock In {\em Proceedings of the LSS Computational Systems Bioinformatics + Conference ({CSB})}, Stanford, CA, August 2006. + Pages 67-78. ISBN 1-86094-700-X. + +\bibitem{jcb-poly06} +L.~Wang, R.~Mettu, and B.~R. Donald. +\newblock A polynomial-time algorithm for {\em de novo} protein backbone + structure determination from {NMR} data. +\newblock {\em Journal of Computational Biology}, 2006. +\newblock In press. + +\bibitem{proteins06} +S.~Potluri, A.~Yan, B.~R. Donald, and C.~Bailey-Kellogg. +\newblock Structure determination of symmetric homo-oligomers by a complete + search of symmetry configuration space using {NMR} restraints and van der + {Waals} packing. +\newblock {\em Proteins: Structure, Function and Bioinformatics}, + 2006; 65(1):203--219. + +%\end{Enumerate} + +%\end{thebibliography} + +\end{Enumerate} + +%\end{thebibliography} +%%%%%%% endpapers/biblio + + +%\input{papers} +%\input{papers2} + +\MEMS{Change URL} + +\gobble{ +\begin{center} +{\sf Publications available online at {\tt www.cs.dartmouth.edu/\lower1.50ex\hbox{\LARGE{\~{}}}brd/Research/Bio/}} +\end{center} +} + +%\newpage +%\setcounter{page}{1} % or whatever + +\subsection*{C. Research Projects and Funding} + +\subsection*{CURRENT SUPPORT} + +\def\myhrule{\smallskip\hrule\smallskip} + +\myhrule +\noindent \begin{tabular}{ll} +DONALD, BRUCE R. & ONGOING\\ + (PI: Donald) & 2002-2007 \\ + NIH/NIGMS & R01 GM-65982\\ +{\em Automated NMR Assignment and Protein Structure}\\ +\effortamount{\$150,000 &\\} +\end{tabular} + +The long-term objective of this project is the development of new +computational methods for biomolecular NMR, to be applied in +structural genomics. Two main foci are novel algorithms for automated +assignments, and algorithms for automated structure determination from +solution-state protein NMR. + +\myhrule +\noindent \begin{tabular}{ll} +DONALD, BRUCE R.& ONGOING \\ +(PI: A. Anderson, Co-investigator: B. Donald) & 2003-2008\\ +NIH (NIGMS \& NIAID) & +R01 GM-067542 \\ +{\em Design of C.~parvum and T.~gondii DHFR-TS Inhibitors}\\ +\effortamount{\$150,000 {(total); Donald sub only: \$11,000.} & \\} +\end{tabular} + +The major goal of this project is to design selective and potent +inhibitors against the dihydrofolate reductase (DHFR) domain of +dihydrofolate reductase-thymidylate synthase (DHFR-TS) from +{\em Cryptosporidium hominis} and {\em Toxoplasma gondii. } + +\myhrule + +\subsection*{Completed Research Support} + +\myhrule +\noindent +\begin{tabular}{ll} +DONALD, BRUCE R. & COMPLETED\\ + (PI: Donald) & 2003-2005 \\ + NSF & EIA-0305444\\ +{\em Algorithmic Challenges in Computational Biology}\\ +\effortamount{ \$37,500 &\\} +\end{tabular} + +This grant supported computational research in functional genomics and +computational methods in NMR structural biology. + +%\myhrule + +%\newpage + +\myhrule + +\noindent +\begin{tabular}{ll} +DONALD, BRUCE R. & COMPLETED\\ + (co-PI: B.~Donald) & 1998-2003 \\ + NSF & NSF 98-02068 \\ +\end{tabular} + +{\em Systems Science for Physical Geometric Algorithms} + + +NSF research infrastructure grant. The major goals of this project +were to provide research infrastructure for computational science and +computational biology in the Computer Science Department. This +includes workstations, supercomputing facilities, networking, etc. + +\myhrule + +\newpage + +\myhrule + +\noindent +\begin{tabular}{ll} +DONALD, BRUCE R. & COMPLETED\\ + (PI: Donald) & 2001-2003 \\ + NSF & EIA-0102710\\ +\end{tabular} + +{\em Physical Geometric Algorithms and Systems for + High-Throughput NMR Structural Biology} + + The major goals of this project were to +develop novel computational methods for biomolecular NMR. + +\myhrule + + +\noindent +\begin{tabular}{ll} +DONALD, BRUCE R. & COMPLETED\\ + (PI: Donald) & 2001-2003 \\ + NSF & EIA-0102712\\ +\end{tabular} + +{\em Physical Geometric Algorithms and Systems for + Structural Biology using Mass Spectrometry} + +The major goals of this project were to +develop novel computational methods for structural mass +spectrometry and proteomics. + +\myhrule + +\noindent +\begin{tabular}{ll} +DONALD, BRUCE R. & COMPLETED\\ + (PI: Donald) & 2000-2006 \\ + DHS/ODP & 2000-DT-CX-K001 +\end{tabular} + +{\em Microelectromechanical Systems for Infosecurity} + + +The major goal of this project was the development of novel +microelectromechanical systems ("MEMS") to be useful in micro- and +nano-technology applications for homeland security, in particular, +information security and micro robotics. + +\myhrule + + + +\subsection*{PENDING SUPPORT} + + +\myhrule +\noindent \begin{tabular}{ll} DONALD, BRUCE R.& PENDING \\ + (PI: D. Madden, Co-investigator: B. Donald) & 2007-2012\\ +Submitted to NIH (NIDDK) & R01 Application \\ + {\em Keeping CFTR in its +Place: An Integrated Small-Molecule Approach}\\ +\end{tabular} + +The major goal of this project is to develop an integrated +experimental and theoretical approach to identifying small-molecule +inhibitors selective for the CAL PDZ domain (a molecular scaffolding +protein), which interacts with the cytoplasmic C-terminus of the +cystic fibrosis transmembrane conductance regulator protein (CFTR). + + +\myhrule +\noindent \begin{tabular}{ll} DONALD, BRUCE R.& PENDING \\ + (PI: J. Hoch, Co-PIs: B. Donald, G. Wagner, A. Alexandrescu, + P. Bolton) & 2006-2008\\ +Submitted to NSF & MRI application \\ +{\em Acquisition of a High Perfomance Computational +Resource for NMR Structural Biology}.&\\ +\end{tabular} + +The major goal of this project is the acquisition of a supercomputer +that will be attached to a high field NMR spectrometer in order to +facilitate the development of data-directed high-throughput +computational protocols for NMR data processing, automated assignment, +and structure determination. + +\myhrule + +\noindent \begin{tabular}{ll} DONALD, BRUCE R.& PENDING \\ + (PI: B. Donald) & 2007-2012\\ +Submitted to NIH (NIGMS) & R01 Application \\ + {\em Computational Active-Site Redesign and Binding Prediction via Molecular Ensembles}\\ +\end{tabular} + +The major goal of this project is to develop novel algorithms to plan +structure-based site-directed mutations to a protein's active site in +order to modify its function. The new algorithms will make progress +towards the long-term objective of reprogramming the specificity of +non-ribosomal peptide synthetase domains, whose products include +natural antibiotics, antifungals, antivirals, immunosuppressants, and +antineoplastics. + + +\myhrule + + +\end{document} + +%%% Local Variables: +%%% write-file-hooks: (time-stamp) +%%% time-stamp-active: t +%%% time-stamp-start: "\\\\def\\\\mydate{" +%%% time-stamp-end: "}" +%%% time-stamp-line-limit: 20 +%%% End: diff --git a/Master/texmf-dist/doc/latex/nih/example-nih-cls.pdf b/Master/texmf-dist/doc/latex/nih/example-nih-cls.pdf Binary files differnew file mode 100644 index 00000000000..7e96b4778da --- /dev/null +++ b/Master/texmf-dist/doc/latex/nih/example-nih-cls.pdf diff --git a/Master/texmf-dist/doc/latex/nih/example-nih-cls.tex b/Master/texmf-dist/doc/latex/nih/example-nih-cls.tex new file mode 100644 index 00000000000..d17a4bb807a --- /dev/null +++ b/Master/texmf-dist/doc/latex/nih/example-nih-cls.tex @@ -0,0 +1,243 @@ +% This example file for NIH submissions was originally written +% by Bruce Donald (http://www.cs.duke.edu/brd/). +% +% You may freely use, modify and/or distribute this file. +% +\documentclass[11pt]{nih} +%\documentclass{article} +%\documentclass[12pt]{article}% +% last revision: +\def\mydate{2005-06-09 13:58:03 brd} + + +%%%%%%% Two column control +\newif\ifdotwocol +\dotwocoltrue % two col +%\dotwocolfalse % one col +\long\def\twocol#1#2{\ifdotwocol{#1}\else{#2}\fi} +%%%%%%% + +\def\mybeforeequation{\footnotesize} +%\def\mybeforeequation{\small} +%\def\mybeforeequation{} + +\def\myafterequation{\renewcommand\baselinestretch{1.1}} +%\def\myafterequation{} + +%%%%%%%%%%%%%%%% +%%%%%%%%%%%%%%%% + +\def\citeusmark{$^{\textstyle \star}$} +\def\citeus#1#2{\cite{#1}} + +\def\crow#1#2{#2} + +%\usepackage{denselists} +%\usepackage{scaledfullpage} +\usepackage[dvips]{graphicx} +\usepackage{color} +\usepackage{boxedminipage} +\usepackage{amsfonts} +\usepackage{amsmath} +\usepackage{url} +%\usepackage{times} +%\usepackage{nih} % PHS 398 Forms +%\usepackage{nihblank} % For printing on Blank PHS 398 Forms +%\usepackage{confidential} + +\def\Paper{grant application} +\def\paper{application} +\def\refappendix{Sec.} + +\def\poster{(Poster)} + +%Note from brd +\long\def\todo#1{{\bf{To do:}} #1} +%\long\def\todo#1{} +\def\ICRA{IEEE International Conference on Robotics and Automation (ICRA)} + +\long\def\squeezable#1{#1} + +%\def\a5{$\alpha_{_5}$ + +\def\a5{5} + +%\def\mycaptionsize{\normalsize} +%\def\mycaptionsize{\small} +%\def\mycaptionsize{\small} +\def\mycaptionsize{\footnotesize} +\def\mycodesize{\footnotesize} +\def\myeqnsize{\small} + +\def\sheading#1{{\bf #1:}\ } +\def\sheading#1{\subsubsection{#1}} +%\def\sheading#1{\bigskip {\bf #1.}} + +\def\ssheading#1{\noindent {\bf #1.}\ } + +\newtheorem{hypothesis}{Hypothesis} +\long\def\hyp#1{\begin{hypothesis} #1 \end{hypothesis}} + +\def\cbk#1{[{\em #1}]} + +\def\R{\mathbb{R}} +\def\midv{\mathop{\,|\,}} +\def\Fscr{\mathcal{F}} +\def\Gscr{\mathcal{G}} +\def\Sscr{\mathcal{S}} +\def\set#1{{\{#1\}}} +\def\edge{\!\rightarrow\!} +\def\dedge{\!\leftrightarrow\!} +\newcommand{\EOP}{\nolinebreak[1]~~~\hspace*{\fill} $\Box$\vspace*{\parskip}\vspace*{1ex}} +%my way of doing starred references +\newcommand{\mybibitem}[1]{\bibitem{#1} +\label{mybiblabel:#1}} +\newcommand{\BC}{[} +\newcommand{\EC}{]} +\newcommand{\mycite}[1]{\ref{mybiblabel:#1}\nocite{#1}} +\newcommand{\starcite}[1]{\ref{mybiblabel:#1}\citeusmark\nocite{#1}} + + +\def\degree{$^\circ$} +\def\R{\mathbb{R}} +\def\Fscr{\mathcal{F}} +\def\set#1{{\{#1\}}} +\def\edge{\!\rightarrow\!} +\def\dedge{\!\leftrightarrow\!} + +\long\def\gobble#1{} +\def\Jigsaw{{\sc Jigsaw}} +\def\ahelix{\ensuremath{\alpha}-helix} +\def\ahelices{\ensuremath{\alpha}-helices} +\def\ahelical{$\alpha$-helical} +\def\bstrand{\ensuremath{\beta}-strand} +\def\bstrands{\ensuremath{\beta}-strands} +\def\bsheet{\ensuremath{\beta}-sheet} +\def\bsheets{\ensuremath{\beta}-sheets} +\def\hone{{\ensuremath{^1}\rm{H}}} +\def\htwo{{$^{2}$H}} +\def\cthir{{\ensuremath{^{13}}\rm{C}}} +\def\nfif{{\ensuremath{^{15}}\rm{N}}} +\def\hn{{\rm{H}\ensuremath{^\mathrm{N}}}} +\def\hnone{{\textup{H}\ensuremath{^1_\mathrm{N}}}} +\def\ca{{\rm{C}\ensuremath{^\alpha}}} +\def\catwel{{\ensuremath{^{12}}\rm{C}\ensuremath{^\alpha}}} +\def\ha{{\rm{H}\ensuremath{^\alpha}}} +\def\cb{{\rm{C}\ensuremath{^\beta}}} +\def\hb{{\rm{H}\ensuremath{^\beta}}} +\def\hg{{\rm{H}\ensuremath{^\gamma}}} +\def\dnn{{\ensuremath{d_{\mathrm{NN}}}}} +\def\dan{{\ensuremath{d_{\alpha \mathrm{N}}}}} +\def\jconst{{\ensuremath{^{3}\mathrm{J}_{\mathrm{H}^{\mathrm{N}}\mathrm{H}^{\alpha}}}} } +\def\cbfb{{CBF-$\beta$}} + +\newtheorem{defn}{Definition} +\newtheorem{claim}{Claim} + + \gobble{ + \psfrag{CO}[][]{\colorbox{white}{C}} + \psfrag{OO}[][]{\colorbox{white}{O}} + \psfrag{CA}[][]{\colorbox{white}{\ca}} + \psfrag{HA}[][]{\colorbox{white}{\ha}} + \psfrag{CB}[][]{\colorbox{white}{\cb}} + \psfrag{HB}[][]{\colorbox{white}{\hb}} + \psfrag{HN}[][]{\colorbox{white}{\hn}} + \psfrag{N15}[][]{\colorbox{white}{\nfif}} + \psfrag{dnn}[][]{\dnn} + \psfrag{dan}[][]{\dan} + \psfrag{phi}[][]{$\phi$} + } + +\newenvironment{closeenumerate}{\begin{list}{\arabic{enumi}.}{\topsep=0in\itemsep=0in\parsep=0in\usecounter{enumi}}}{\end{list}} +\def\CR{\hspace{0pt}} % ``invisible'' space for line break + + + +\newif\ifdbspacing +%\dbspacingtrue % For double spacing +\dbspacingfalse % For normal spacing + +\ifdbspacing + \doublespacing + \newcommand{\capspacing}{\doublespace\mycaptionsize} +\else + \newcommand{\capspacing}{\mycaptionsize} +\fi + +\def\rulefigure{\smallskip\hrule} + +% \def\codesize{\normalsize} +\def\codesize{\small} + +% Can use macros \be, \ee, \en as shortcuts +% for \begin{enumerate}, \end{enumerate}, \item +% respectively. + +\def\be{\begin{enumerate}} % Begin Enumerate +\def\ee{\end{enumerate}} % End Enumerate +\def\en{\item} % ENtry (item) +\def\bi{\begin{itemize}} % Begin Itemize +\def\ei{\end{itemize}} % End Itemize +\def\bv{\begin{verbatim}} % Begin Verbatim +\def\ev{\end{verbatim}} % End Verbatim + +\def\matlab{{\sc matlab} } +\def\amber{{\sc amber} } +\def\KS{{$K^*$}} +\def\KSM{{K^*}} % K-Star Math +\def\KSTM{{\tilde{K}^*}} % K-Star Tilde Math (appx K*) +\def\KOP{{$K^{\dagger}_{o}$}} % K-Star Optimal partial +\def\KOPM{{K^{\dagger}_{o}}} % K-Star Optimal partial Math +\def\KP{{$K^{\dagger}$}} % K-Star partial +\def\KPM{{K^{\dagger}}} % K-Star partial Math +\def\KTPM{{\tilde{K}^{\dagger}}} % K-Star Tilde partial Math +\def\KD{{$K_{_D}$}} +\def\KA{{$K_{_A}$}} +\def\qpM{{q_{_P}}} +\def\qlM{{q_{_L}}} +\def\qplM{{q_{_{PL}}}} +\def\qSplM{{q^*_{_{PL}}}} +\def\KSO{{$K^*_{o}$}} % K-Star Optimal +\def\KSOM{{K^*_{o}}} % K-Star Optimal Math +\def\CBFB{{CBF-$\beta$}} % Core binding factor beta +\def\argmin{\mathop{\mathrm{argmin}}} +\def\rhl#1{{\em \underline{RYAN}: *\{{#1}\}*}} +\def\set#1{{\left\{ #1 \right\}}} +\def\Escr{{\mathcal{E}}} +\def\Jscr{{\mathcal{J}}} +\def\Kscr{{\mathcal{K}}} +\def\th{{$^{{\mathrm{th}}}$}} + +\newtheorem{proposition}{Proposition} +\newtheorem{lemma}{Lemma} + + + +\begin{document} + +\bigskip + +\appendix + +%\mydate + +\setcounter{page}{20} % or whatever + +%\noindent{\Large\bf Research Plan} + +\section{Specific Aims} + +\noindent Realization of novel molecular function requires the ability +to alter molecular complex formation. Enzymatic function can be +altered by changing enzyme-substrate interactions via modification of +an enzyme's active site. A redesigned enzyme may either perform a +novel reaction on its native substrates or its native reaction on +novel substrates. We propose a novel algorithm for protein redesign, +which searches over possible active site mutations and combines a +statistical mechanics-derived ensemble-based approach to computing the +binding constant with the speed and completeness of a branch-and-bound +pruning algorithm. We will develop an efficient$\ldots$ + +\end{document} + + diff --git a/Master/texmf-dist/tex/latex/nih/denselists.sty b/Master/texmf-dist/tex/latex/nih/denselists.sty new file mode 100644 index 00000000000..d8188083d48 --- /dev/null +++ b/Master/texmf-dist/tex/latex/nih/denselists.sty @@ -0,0 +1,18 @@ +% These definitions for minimizing list spacing come from Michel Goossens, +% as put together by Bruce Donald (http://www.cs.duke.edu/brd/). +% +% You may freely use, modify and/or distribute this file. +% +% Prevent infinite loops +\typeout{Style New lists - dense lists} + +\let\Otemize =\itemize +\let\Onumerate =\enumerate +\let\Oescription =\description +% Zero the vertical spacing parameters +\def\Nospacing{\itemsep=0pt\topsep=0pt\partopsep=0pt\parskip=0pt\parsep=0pt} +% Redefine the environments in terms of the original values +\newenvironment{Itemize}{\Otemize\Nospacing}{\endlist} +\newenvironment{Enumerate}{\Onumerate\Nospacing}{\endlist} +\newenvironment{Description}{\Oescription\Nospacing}{\endlist} + diff --git a/Master/texmf-dist/tex/latex/nih/nih.cls b/Master/texmf-dist/tex/latex/nih/nih.cls new file mode 100644 index 00000000000..835118db2a5 --- /dev/null +++ b/Master/texmf-dist/tex/latex/nih/nih.cls @@ -0,0 +1,136 @@ +% vim:tabstop=4 expandtab syntax=tex: +% +% nih.cls - class for preparing NIH (US National Institutes of Health) +% grant applications. +% +% Copyright (C) 2003, 2004, 2005, 2006 Bruce Donald. +% +% This work may be distributed and/or modified under the +% conditions of the LaTeX Project Public License, either version 1.3c +% of this license or (at your option) any later version. +% The latest version of this license is in +% http://www.latex-project.org/lppl.txt +% and version 1.3 or later is part of all distributions of LaTeX +% version 2003/12/01 or later. +% +% This work has the LPPL maintenance status "author-maintained". +% +% The Current Maintainer of this work is Bruce Donald +% (http://www.cs.duke.edu/brd/). +% +% This work consists of only this one file, nih.cls. +% Accompanying example files are not under the LPPL. +% +% last changed by Bruce Donald in 2005 +% to mimic the two PHS forms. +% +% Previous modified by Alan Shields, May 2003 +% email: Alan-Shields2omrf.ouhsc.edu +% Heavily based upon (read: copied almost exactly from) +% nih.sty by Bruce R. Donald and Matthew L. Fidler +% +\NeedsTeXFormat{LaTeX2e} +%\ProvidesClass{nih}[2005 NIH PHS 398 as of June 2005] +\ProvidesClass{nih}[2005/06/01 NIH PHS 398 as of June 2005] + +% includes needed for preliminary code +\RequirePackage{ifthen} + +% Preliminary code +\newcommand{\nih@kk}{~} + +\newboolean{nih@blank} +\setboolean{nih@blank}{false}% not strictly necessary, but let's be clear about it + +% Options +%%%% Changed by M A Lewis, Ph.D. (mal11 at alumni.cwru.edu) +%%%% NIH suggests Helvetica or Arial 12pt. Use Helvetica Postscript fonts for 12pt also. +\DeclareOption{12pt}{\AtEndOfClass{\RequirePackage{helvet}\renewcommand{\familydefault}{\sfdefault}}} +%\DeclareOption{12pt}{\AtEndOfClass{\RequirePackage{times}}} +%\DeclareOption{12pt}{\AtEndOfClass{\RequirePackage{arial}}} +\DeclareOption{11pt}{\AtEndOfClass{\RequirePackage{helvet}\renewcommand{\familydefault}{\sfdefault}}} +\DeclareOption{nihblank}{\setboolean{nih@blank}{true}} +\DeclareOption{kk}{\renewcommand{\nih@kk}{\small KK}} +\DeclareOption*{\PassOptionsToClass{\CurrentOption}{article}} +\ProcessOptions\relax + +% The class we're overwriting +\LoadClassWithOptions{article} + + +% Begin Requirements +%%%% Changed by M A Lewis, Ph.D. (mal11 at alumni.cwru.edu) +%%%% PHS 398 allows 0.5in magins everywhere. Simplify page layout using geometry package. +%\RequirePackage{fullpage} +\RequirePackage[letterpaper,margin=0.5in,includeheadfoot]{geometry} +\RequirePackage{fancyhdr} +\RequirePackage{amsmath} + + + +%%%% More code +% preamble stuff +\newcommand{\nih@PIname}{Donald, Bruce R.} +\newcommand{\piname}[1]{\renewcommand{\nih@PIname}{#1}} + +% constants +\newcommand{\nih@sillysize}{\scriptsize} + +% set the page style +\pagestyle{fancy} +\chead{\fancyplain{}{% + \ifthenelse{\boolean{nih@blank}}% + {}% fi + {% + {{\sf\scriptsize Principal Investigator/Program Director% + (Last, First, Middle):}}% + }% esle + } +} +\rhead{\fancyplain{}{% + \ifthenelse{\boolean{nih@blank}}% + {\ \ \ {\nih@PIname}\ \ \ \ \ }% fi + {% + \underline{\ \ \ {\nih@PIname}\ \ \ \ \ }% + }% esle + } +} +\lhead{\fancyplain{}{\nih@kk}} +\lfoot{\fancyplain{}{% + \ifthenelse{\boolean{nih@blank}}% + {}% fi + {\sf\footnotesize PHS 398/2590 (Rev.~09/04)\\}% esle + } +} +\cfoot{\ifthenelse{\boolean{nih@blank}}% + {\thepage}% fi + {\sf\footnotesize{Page}}% esle + \ \underline{\ \ \ {\sf\thepage}\ \ \ }% +} +\rfoot{\fancyplain{}% + {\sf\footnotesize{\textbf{Continuation Format Page}}}% +} + +\renewcommand{\headrulewidth}{0pt} +\renewcommand{\footrulewidth}{0.75pt} + +%%%% Changed by M A Lewis, Ph.D. (mal11 at alumni.cwru.edu) +%%%% Simplify page layout by using geometry package above. +% page dimensions (note: assumes 8.5x11) +%\setlength{\oddsidemargin}{31pt} +%\setlength{\textwidth}{8.5in} +%\addtolength{\textheight}{0in} % 0.5in margins on both sides +%\addtolength{\textwidth}{-1.1in} +%\setlength{\oddsidemargin}{-1in} +%\addtolength{\oddsidemargin}{0.505in} +%\setlength{\evensidemargin}{\oddsidemargin} +%\addtolength{\textheight}{0.2in} +%\addtolength{\topmargin}{-0.2in} +%\renewcommand{\baselinestretch}{.9} +%\headwidth=\textwidth + +\addtolength{\headheight}{2.5pt} + +% rename the bibliography section +\AtBeginDocument{\renewcommand{\refname}{Literature~Cited}} +%FIXME: something is going on with the bibliography style. Dunno what. diff --git a/Master/texmf-dist/tpm/nih.tpm b/Master/texmf-dist/tpm/nih.tpm new file mode 100644 index 00000000000..8212f679ff2 --- /dev/null +++ b/Master/texmf-dist/tpm/nih.tpm @@ -0,0 +1,29 @@ +<!DOCTYPE rdf:RDF SYSTEM "../../support/tpm.dtd"> +<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:TPM="http://texlive.dante.de/"> + <rdf:Description about="http://texlive.dante.de/texlive/Package/nih.zip"> + <TPM:Name>nih</TPM:Name> + <TPM:Type>Package</TPM:Type> + <TPM:Date>2006/09/29 13:55:00</TPM:Date> + <TPM:Version></TPM:Version> + <TPM:Creator>karl</TPM:Creator> + <TPM:Title>The nih package.</TPM:Title> + <TPM:Description></TPM:Description> + <TPM:Author></TPM:Author> + <TPM:Size>67287</TPM:Size> + <TPM:Build/> + <TPM:RunFiles size="6197"> +texmf-dist/tex/latex/nih/denselists.sty +texmf-dist/tex/latex/nih/nih.cls +texmf-dist/tpm/nih.tpm + </TPM:RunFiles> + <TPM:DocFiles size="62124"> +texmf-dist/doc/latex/nih/README +texmf-dist/doc/latex/nih/example-biosketch.pdf +texmf-dist/doc/latex/nih/example-biosketch.tex +texmf-dist/doc/latex/nih/example-nih-cls.pdf +texmf-dist/doc/latex/nih/example-nih-cls.tex + </TPM:DocFiles> + <TPM:Provides>Package/nih</TPM:Provides> + </rdf:Description> +</rdf:RDF> + diff --git a/Master/texmf/lists/nih b/Master/texmf/lists/nih new file mode 100644 index 00000000000..25acc513e03 --- /dev/null +++ b/Master/texmf/lists/nih @@ -0,0 +1,11 @@ +texmf-dist/doc/latex/nih/README +texmf-dist/doc/latex/nih/example-biosketch.pdf +texmf-dist/doc/latex/nih/example-biosketch.tex +texmf-dist/doc/latex/nih/example-nih-cls.pdf +texmf-dist/doc/latex/nih/example-nih-cls.tex + +texmf-dist/tex/latex/nih/denselists.sty +texmf-dist/tex/latex/nih/nih.cls +texmf-dist/tpm/nih.tpm + +texmf/lists/nih diff --git a/Master/texmf/tpm/collection-publishers.tpm b/Master/texmf/tpm/collection-publishers.tpm index 57aa56e1ddb..49755884a94 100644 --- a/Master/texmf/tpm/collection-publishers.tpm +++ b/Master/texmf/tpm/collection-publishers.tpm @@ -42,6 +42,7 @@ <TPM:Package name="mnras"/> <TPM:Package name="muthesis"/> <TPM:Package name="nature"/> + <TPM:Package name="nih"/> <TPM:Package name="nrc"/> <TPM:Package name="osa"/> <TPM:Package name="pracjourn"/> |