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author | Karl Berry <karl@freefriends.org> | 2006-01-13 00:09:02 +0000 |
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committer | Karl Berry <karl@freefriends.org> | 2006-01-13 00:09:02 +0000 |
commit | aed24ac15c4446a14ffebfe4be461fcba94af705 (patch) | |
tree | 6ccf96f7a40a1cad0614c8011cc09cb45625a46d /Master/texmf-dist/tex/latex/textopo/textopo.def | |
parent | 458ac1dc33cd1cb81d92e545482ce5a8d29bfba0 (diff) |
textopo
git-svn-id: svn://tug.org/texlive/trunk@1384 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Master/texmf-dist/tex/latex/textopo/textopo.def')
-rw-r--r-- | Master/texmf-dist/tex/latex/textopo/textopo.def | 133 |
1 files changed, 133 insertions, 0 deletions
diff --git a/Master/texmf-dist/tex/latex/textopo/textopo.def b/Master/texmf-dist/tex/latex/textopo/textopo.def new file mode 100644 index 00000000000..5034fcf422b --- /dev/null +++ b/Master/texmf-dist/tex/latex/textopo/textopo.def @@ -0,0 +1,133 @@ +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%%%%% %%%%% +%%%%% Default parameter settings for the LaTeX ``TeXtopo'' package %%%%% +%%%%% %%%%% +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%%%%% %%%%% +%%%%% This example file contains all standard settings of the TeXtopo %%%%% +%%%%% package. It can be used as a template for the creation of perso- %%%%% +%%%%% nal parameter files. All TeXtopo user commands are allowed and %%%%% +%%%%% functional when specified here. %%%%% +%%%%% %%%%% +%%%%% To activate these settings for your topology plot load this file %%%%% +%%%%% by naming it as optional parameter at the beginning of the tex- %%%%% +%%%%% topo environment, e.g. %%%%% +%%%%% %%%%% +%%%%% \begin{textopo}[myparameterfile] %%%%% +%%%%% . %%%%% +%%%%% . %%%%% +%%%%% \end{textopo} %%%%% +%%%%% %%%%% +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + +\Nterm{intra} % Assume N-terminus intracellular +\loopextent{30} % Set loop extent to 30 residues +\shadingcolors{blues} % Use color scheme `blues' for shading +\showmembrane % Show the membrane +\membranecolors{Black}{White} % as black lines w/o filling +\labeloutside{extra} % Label extracellular side with `extra' +\labelinside{intra} % Label intracellular side with `intra' +\rulethickness{0.5pt} % Set thickness of label rules to 0.5pt +\countercolor{Red} % Use red color for position counter +\helixstyle{perspective} % Draw helical wheels in perspective +\showbonds % Show bonds on helical wheels +\hidemoment % Do not show hydrophobic moment +\momentcolor{Lavender} % Lavender color for hydrophobic moment +\scalemoment{100} % Moment rule length is 100% +\showwheelnumbering % Show residue numbers on helical wheels +\scalewheel{100} % Show full size helical wheel +\symbolsize{medium} % Use medium sized symbols in wheels +\donotshadestartMet % Do not shade the start methionine +\showNterm % Show amino terminus as NH2 +\showCterm % Show carboxy terminus as COOH + +\setfamily{labels}{sf} % Use sans serif family for labels +\setseries{labels}{md} % Use normal series for labels +\setshape {labels}{up} % Use upright shape for labels +\setfamily{membranelabels}{sf} % Use sans serif for membrane labels +\setseries{membranelabels}{md} % Use normal series for membrane labels +\setshape {membranelabels}{up} % Use upright shape for membrane labels +\setfamily{looplabels}{sf} % Use sans serif for loop labels +\setseries{looplabels}{bf} % Use bold face for loop labels +\setshape {looplabels}{up} % Use upright shape for loop labels +\looplabelcolor{Red} % Set loop label color to `Red' +\setfamily{TMlabels}{sf} % Use sans serif for TM labels +\setseries{TMlabels}{bf} % Use bold face for TM labels +\setshape {TMlabels}{up} % Use upright shape for TM labels +\TMlabelcolor{Blue} % Set TM label color to `Blue' +\labelTMs{\Romancount} % Label the TMs with roman numbers +\setfamily{legend}{sf} % Use sans serif font for legend texts +\setseries{legend}{md} % Use normal series for legend texts +\setshape {legend}{up} % Use upright shape for legend texts +\setsize {legend}{normalsize} % Use normal font size for legends +\legendcolor{Black} % Set legend text color to `Black' +\showlegend % Show the legend +\hidegrid % Do not show the grid + +\labelstyle{CONFLICT} % Label style definitions for + {diamond}{Black}{Blue}{White} % + {Conflicting reports in literatur} % SwissProt data files + +\labelstyle{VARIANT} % | + {diamond}{Black}{Orange}{Black} % | + {Sequence variants} % V + +\labelstyle{VARSPLIC} % + {diamond}{Black}{Apricot}{Black} % + {Splice variants} % + +\labelstyle{MUTAGEN} % + {diamond}{Black}{Red}{White} % + {Mutation sites} % + +\labelstyle{SIGNAL} % + {square}{Black}{Yellow}{Black} % + {Signal peptide} % + +\labelstyle{TRANSIT} % + {square}{Black}{Green}{Black} % + {Transit peptide} % + +\labelstyle{PROPEP} % + {square}{Black}{Red}{White} % + {Propeptide} % + +\labelstyle{CHAIN} % + {circ}{Black}{Aquamarine}{Blue} % + {Polypeptide chain} % + +\labelstyle{PEPTIDE} % + {circ}{Black}{Peach}{Black} % + {Released peptide} % + +\labelstyle{DOMAIN} % + {circ}{Black}{Turquoise}{Black} % + {Domain} % + +\labelstyle{CABIND} % + {circ}{Black}{Gray50}{White} % + {Calcium binding domain} % + +\labelstyle{DNABIND} % + {circ}{Black}{YellowGreen}{Black} % + {DNA binding domain} % + +\labelstyle{NPBIND} % + {circ}{Black}{Melon}{Black} % + {Nucleotide phosphate binding} % + +\labelstyle{ZNFING} % + {circ}{Black}{Lavender}{Black} % + {Zinc finger} % + +\labelstyle{SIMILAR} % + {circ}{Black}{SpringGreen}{Black} % + {Similar region} % + +\labelstyle{REPEAT} % + {circ}{Black}{Plum}{White} % + {Sequence repeat} % + +\labelstyle{SITE} % + {circ}{Black}{ForestGreen}{White} % + {Special site} % |