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authorKarl Berry <karl@freefriends.org>2017-01-16 23:11:36 +0000
committerKarl Berry <karl@freefriends.org>2017-01-16 23:11:36 +0000
commit4e5fab2a66c40e3caa99cadd5e1a1d3788a14279 (patch)
treed281dad2bcc27403b2c963b00344079acafab331 /Master/texmf-dist/doc
parent6c8025cb60ed6910051ed5680516710673d65e19 (diff)
mcf2graph (15jan17)
git-svn-id: svn://tug.org/texlive/trunk@42970 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Master/texmf-dist/doc')
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG6
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/README3
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf39
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdfbin235845 -> 235860 bytes
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex2
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf12
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdfbin440005 -> 440033 bytes
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex2
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdfbin122258 -> 122289 bytes
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex6
10 files changed, 38 insertions, 32 deletions
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG b/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG
index fc9827518bb..b827c211c0d 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG
@@ -1,6 +1,10 @@
*******************************************************************************
- Changelog of mcf2graph software package by Akira Yamaji 2017-01-09
+ Changelog of mcf2graph software package by Akira Yamaji 2017-01-15
*******************************************************************************
+[ver. 4.08 / 2017-01-15]
+ -add monoisotopic mass calculation
+ -update MCF syntax manual
+
[ver. 4.07 / 2017-01-09]
-add new command '!!' : '!~db'
-add new command '!!!' : '!~tm'
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/README b/Master/texmf-dist/doc/metapost/mcf2graph/README
index f1c3c86ae12..bcd344c9b18 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/README
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/README
@@ -1,7 +1,7 @@
********************************************************************************
mcf2graph : Convert Molecular Coding Format to graphics with METAFONT/METAPOST
Author : Akira Yamaji
- version : 4.07 2017-01-09
+ version : 4.08 2017-01-15
E-mail : mcf2graph@gmail.com
Located at : http://www.ctan.org/pkg/mcf2graph
********************************************************************************
@@ -30,6 +30,7 @@
(12) mcf_example.pdf PDF of (11) typeset with LuaTeX(LuaLaTeX)
3. How to use mcf2graph with Metapost
+ Minimum requirement to run mcf2graph : mpost.exe,mpost.dll,mpost.mp,plain.mp
( 1) >mpost -s ahangle=0 FILENAME => output no graphic file.
( 2) >mpost -s ahangle=1 FILENAME => output PNG file. (default:eps)
( 3) >mpost -s ahangle=2 FILENAME => output SVG file.
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf
index 2c97bc08491..97a01bf0236 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf
@@ -1,7 +1,7 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Molecular Coding Format for mcf_example.tex by Akira Yamaji 2017.01.09
+% Molecular Coding Format for mcf_example.tex by Akira Yamaji 2017.01.13
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-input mcf2graph.mf; %%% it must be version 4.07 or later
+input mcf2graph.mf; %%% it must be version 4.08 or later
%-------------------------------------------------------------------------
font_wd#:=33mm#;
font_ht#:=24mm#;
@@ -18,15 +18,15 @@ var4:="cal_MW"; tag4:="cMW";
%%%% var3:="mol_wd"; tag3:="mWD";
%%%% var4:="mol_ht"; tag4:="mHT";
%%%% var5:="cal_MW"; tag5:="cMW";
-%%%% var6:="cal_FM"; tag6:="cFM";
-%%%% var7:="inf_USE"; tag7:="USE";
-%%%% var8:="inf_EXA"; tag8:="EXA";
-%%%% var9:="inf_EXB"; tag9:="EXB";
+%%%% var6:="cal_MI"; tag6:="cMI";
+%%%% var7:="cal_FM"; tag7:="cFM";
+%%%% var8:="inf_USE"; tag8:="USE";
+%%%% var9:="inf_EXA"; tag9:="EXA";
%%%% auxtag_out;
%%%% sw_checklist:=1;
%%%% sw_MOLout:=1;
%%%% outputformat:="png"; hppp:=vppp:=0.1; outputtemplate:="%j-%3c.png";
-%**************************************************************************
+%***************************************************************************
beginfont("EN:Acetamiprid","MW:222.676")
MCf(<30,Ph,2:N,1:/Cl,4\,!,N,/_,!,/_,!!,N,!,CN)
endfont
@@ -40,7 +40,7 @@ beginfont("EN:Thiamethoxam","MW:291.71")
endfont
%***************************************************************************
beginfont("EN:Tebufenozide","MW:352.478")
- MCf(<30,Ph,6:/Et,3\,//O,!,NH,!,N,/tBu,!,//O,!,|,Ph,@(3,5)/_)
+ MCf(<30,Ph,6:/!,3\,//O,!,NH,!,N,/tBu,!,//O,!,|,Ph,@(3,5)/_)
endfont
%***************************************************************************
beginfont("EN:Pyridaphenthion","MW:340.334")
@@ -87,7 +87,7 @@ endfont
%***************************************************************************
beginfont("EN:Tetraconazole","MW:372.145")
MCf(<-6,
- ?5,$(2,5)d,@(1,2,4)N,4\,!3,O,!,/F^35,/F^-35,!,CF2,#7\,|,Ph,@(4,6)/Cl)
+ ?5,$(2,5)d,@(1,2,4)N,4\,!3,O,!,/F^35,/F^-35,!,CF2,7\,|,Ph,@(4,6)/Cl)
endfont
%***************************************************************************
beginfont("EN:Endosulfan","MW:406.904");
@@ -100,7 +100,8 @@ beginfont("EN:Flutolanil","MW:323.315")
endfont
%***************************************************************************
beginfont("EN:Propiconazole","MW:342.22")
- MCf(<-6,?5,$(2,5)d,@(1,3,4)N,4\,!2,|,Ph,@(4,6)/Cl,#7*,|,?5,@(1,4)O,3:/Pr^24)
+ MCf(<-6,?5,$(2,5)d,@(1,3,4)N,
+ 4\,!2,Ph,@(-1,-3)/Cl,7*,|,?5,@(1,4)O,3:/!2^24)
endfont
%***************************************************************************
beginfont("EN:Pencycuron","MW:328.84")
@@ -120,7 +121,7 @@ beginfont("EN:Oxaziclomefone","MW:376.277")
endfont
%***************************************************************************
beginfont("EN:Cafenstrole","MW:350.437")
- MCf(<30,Ph,@(2,4,6)/_,3\,SOO,!,|,?5,$(2,5)d,@(2,4,5)N,4\,//O,!,N,/Et,!2)
+ MCf(<30,Ph,@(2,4,6)/_,3\,SOO,!,|,?5,$(2,5)d,@(2,4,5)N,4\,//O,!,N,/!,!2)
endfont
%***************************************************************************
beginfont("EN:Cyclosulfamuron","MW:421.428")
@@ -129,7 +130,7 @@ beginfont("EN:Cyclosulfamuron","MW:421.428")
endfont
%***************************************************************************
beginfont("EN:Napropamide","MW:271.36")
- MCf(<-30,Ph,3=Ph,10\,O,!,/_^35,/_^-35,!,//O,!,N,/Et,!)
+ MCf(<-30,Ph,3=Ph,10\,O,!,/_^35,/_^-35,!,//O,!,N,/!,!)
endfont
%***************************************************************************
beginfont("EN:Pyributicarb","MW:330.446")
@@ -141,11 +142,11 @@ beginfont("EN:Propyzamide","MW:256.126")
endfont
%***************************************************************************
beginfont("EN:Pendimethalin","MW:281.312")
- MCf(<30,Ph,@(1,2)/_,@(3,5)/NO2,4\,NH,!,/Et,!2)
+ MCf(<30,Ph,@(1,2)/_,@(3,5)/NO2,4\,NH,!,/!,!2)
endfont
%***************************************************************************
beginfont("EN:Benfluralin","MW:335.283")
- MCf(<30,Ph,@(1,3)/NO2,5:/CF3,2\,N,/Et,!4)
+ MCf(<30,Ph,@(1,3)/NO2,5:/CF3,2\,N,/!,!4)
endfont
%***************************************************************************
beginfont("EN:Trinexapac-ethyl","MW:252.266")
@@ -201,7 +202,7 @@ beginfont("EN:Validamycin","MW:497.494")
endfont
%**************************************************************************
beginfont("EN:Oceltamivir","MW:312.41")
- MCf(<30,?6,3=d,1:/NH2,3:/COO!2,6:/NHCO!,5\~zf,O,!,/Et,!2)
+ MCf(<30,?6,3=d,1:/NH2,3:/COO!2,6:/NHCO!,5\~zf,O,!,/!,!2)
endfont
%***************************************************************************
beginfont("EN:Luciferin","MW:280.33")
@@ -212,7 +213,7 @@ beginfont("EN:Chlorophyll a","MW:893.509")
MCf(<54,{,``1,?5,$(2,5)dl,4:N,3\,54~dl,|,?5,$(2,4)dl,5:N,
-2\,54~dl,|,?5,2=d,5:N,-2\~dl,54,|,?5,5=d,5:N,-2\~dl,&#5,
-1*,24,/*COO!^15,72,//O,&#1,},
- @(2,9,15,20~zf)/_,8:/Et,14\,!!,
+ @(2,9,15,20~zf)/_,8:/!,14\,!!,
#4\`1.45,Mg,&17,-1*,&11~vb,-1*,&23~vb,
#21*,-6~wf,!2,//O,!,O,!2,!!,|,!13,@(1,5,9,13)/_)
endfont
@@ -267,7 +268,7 @@ beginfont("EN:Cromolyn","MW:468.37")
endfont
%**************************************************************************
beginfont("EN:Emetine","MW:480.649")
- MCf(<30,Ph,$(-4,-4)?6,8:N,@(1,6)/O!,-2:/*Et,@(7^-60,12^-60)/*H,
+ MCf(<30,Ph,$(-4,-4)?6,8:N,@(1,6)/O!,-2:/*!,@(7^-60,12^-60)/*H,
-3\,!~zb,<-60,|,?6,5=d,2:NH,-6^-60:*/H,|,-2=?6,$(2,4)dl,@(-2,-3)/O!)
endfont
%***************************************************************************
@@ -343,10 +344,10 @@ endfont;
%***************************************************************************
beginfont("EN:Erythromycin","MW:733.937");
MCf(<30,{,``1,<-120,60,60,60,-60,60,60,-60,60,60,60,-60,60,60,},&1,
- 14:O,13:/*Et,@(1,9)//O,@(2,10)*/_,@(4,6^-35,8,12^35)/*_,
+ 14:O,13:/*!,@(1,9)//O,@(2,10)*/_,@(4,6^-35,8,12^35)/*_,
@(6^35,11,12^-35)*/OH,
#3\*,O,30,|,?6`.7,2:O,@(3,5^35)/_,4:/OH,5^-35:/O!,
- #5\*^30`1.7,O,!,|,?6`.7,6:O,5:/_,2:/OH,3:/NMeMe)
+ #5\*^30`1.7,O,!,|,?6`.7,6:O,5:/_,2:/OH,3:/NMe!)
endfont;
%**************************************************************************
beginfont("EN:Paclitaxel","MW:853.918")
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf
index 626c295bd40..162df6cac38 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf
Binary files differ
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex
index 5f6ee4974a8..07a44728a79 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex
@@ -1,5 +1,5 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Example of MCF typeset by LaTeX mcf_examples.tex by A.Yamaji 2017.01.09
+% Example of MCF typeset by LaTeX mcf_examples.tex by A.Yamaji 2017.01.15
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[a4paper]{article}
\usepackage{graphicx}
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf
index a974662e9e7..0cace2ff00d 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf
@@ -1,7 +1,7 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Molecular Coding Format file for mcf_manual.tex by Akira.Yamaji 2017.01.03
+% Molecular Coding Format file for mcf_manual.tex by Akira.Yamaji 2017.01.15
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-input mcf2graph.mf; %% it must be version 4.06 or later
+input mcf2graph.mf; %% it must be version 4.08 or later
%------------------------------------------------------------------------
sw_auxout:=0;
sw_mol_frame:=0;
@@ -415,7 +415,7 @@ beginfont("EN:substituent 3")
sw_numberA:=1;
sw_clip:=1;
numberA_end:=17;
- MCf(<-30,!16,2:/_,4:/Et,6:/Pr,10:/iPr,14:/tBu,16:/Ph^-60)
+ MCf(<-30,!16,2:/_,4:/!,6:/!2,10:/iPr,14:/tBu,16:/Ph^-60)
endfont
%***********************************************************************
beginfont("EN:substituent 4")
@@ -655,11 +655,11 @@ beginfont("EN:ratio_chain_ring")
font_wd#:=70mm#;
font_ht#:=15mm#;
ratio_chain_ring:= 0.4;
- MCd(1,1)(0, .5)(<30,?6,4:/Et)
+ MCd(1,1)(0, .5)(<30,?6,4:/!)
ratio_chain_ring:= 0.66; %<<== default
- MCd(1,1)(.45, .5)(<30,?6,4:/Et)
+ MCd(1,1)(.45, .5)(<30,?6,4:/!)
ratio_chain_ring:= 1;
- MCd(1,1)(1, .5)(<30,?6,4:/Et)
+ MCd(1,1)(1, .5)(<30,?6,4:/!)
endfont
%***********************************************************************
beginfont("EN:ratio_zebragap_bond")
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf
index be25637bcb6..dfe41477291 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf
Binary files differ
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
index 58282621d33..d3030c9aef9 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
@@ -1,5 +1,5 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Molecular Coding Format manual by Akira Yamaji 2017.01.09
+% Molecular Coding Format manual by Akira Yamaji 2017.01.15
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[a4paper]{article}
%%%%\usepackage{graphicx}
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf
index 485b9887c33..2f74ae116c2 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf
Binary files differ
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex
index 0f33e58642d..8a72f70b7db 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex
@@ -1,7 +1,7 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Example of MCF typest with LuaLaTeX(luamplib) by A.Yamaji 2017.01.09
+% Example of MCF typest with LuaLaTeX(luamplib) by A.Yamaji 2017.01.15
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%%% mcf2graph.mf it must be version 4.07 or later
+%%% mcf2graph.mf it must be version 4.08 or later
\documentclass{article}
%------------------------------------------------------------------------------
\usepackage{luamplib}%
@@ -96,7 +96,7 @@
-2\,54~dl,|,?5,2=d,5:N,-2\~dl,54,|,?5,5=d,5:N,-2\~dl,&#5,
-1*,24,/*COO!^15,72,//O,&#1,},
4\`1.45,Mg,&17,-1*,&11~vb,-1*,&23~vb,
- @(2,9,15,20~zf)/_,8:/Et,14\,!!,
+ @(2,9,15,20~zf)/_,8:/!,14\,!!,
21*,-6~wf,!2,//O,!,O,!2,!!,|,!13,@(1,5,9,13)/_,
)
endfont