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authorKarl Berry <karl@freefriends.org>2021-02-21 22:14:56 +0000
committerKarl Berry <karl@freefriends.org>2021-02-21 22:14:56 +0000
commit95292f9a4428a98e9f5eedeec47db9fdbbab0bbf (patch)
tree1506869c7b3c9d0643bec77175b5264f550806f2 /Master/texmf-dist/doc
parentfa6cf999526cffbe92222a06bfe191f838db6c9b (diff)
mcf2graph (21feb21)
git-svn-id: svn://tug.org/texlive/trunk@57830 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Master/texmf-dist/doc')
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG9
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/README2
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf37
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdfbin535780 -> 535779 bytes
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf321
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdfbin633398 -> 617135 bytes
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex336
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdfbin202100 -> 202477 bytes
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex155
9 files changed, 483 insertions, 377 deletions
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG b/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG
index d0926ab2093..8bf1b7f3d57 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG
@@ -1,6 +1,13 @@
*******************************************************************************
- Changelog of mcf2graph software package by Akira Yamaji 2021-02-11
+ Changelog of mcf2graph software package by Akira Yamaji 2021-02-21
*******************************************************************************
+[ver. 4.58 / 2021-02-21]
+ -change syntax
+ "+" => p_
+ "-" => n_
+ -add function check_mc()
+ -update MCF manual,example
+
[ver. 4.57 / 2021-02-11]
-change syntax
n:@ => @n
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/README b/Master/texmf-dist/doc/metapost/mcf2graph/README
index 7b4bb20d032..dd818987a10 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/README
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/README
@@ -1,7 +1,7 @@
********************************************************************************
mcf2graph : Convert Molecular Coding Format to graphics with METAFONT/METAPOST
Author : Akira Yamaji
- version : 4.57 2021-02-11
+ version : 4.58 2021-02-21
E-mail : mcf2graph@gmail.com
Located at : http://www.ctan.org/pkg/mcf2graph
********************************************************************************
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf
index b1675647755..65420533fc0 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf
@@ -1,8 +1,8 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Molecular Coding Format for mcf_example.tex by Akira Yamaji 2021.02.11
+% Molecular Coding Format for mcf_example.tex by Akira Yamaji 2021.02.21
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-input mcf2graph.mf; %%% it must be version 4.57
-message "* mcf_exa_soc 2021.02.11";
+input mcf2graph.mf; %%% it must be version 4.58
+message "* mcf_exa_soc 2021.02.21";
message "";
%-------------------------------------------------------------------------
fsize:=(35mm,24mm);
@@ -29,12 +29,7 @@ tag1:="F"; tag2:="C"; tag3:="fm"; tag4:="mw"; tag5:="EN"; tag6:="MW";
%%%% for i=nA step nA until w: draw(i,0)--(i,h); endfor
%%%% for i=nA step nA until h: draw(0,i)--(w,i); endfor );
%---------------------------------------------------------------------------
-%%%%sw_calc:=1;
-%%%%ext(defaultfont:="uhvr8r"; defaultscale:=.3;
-%%%% label.lrt(decimal(char_num)&":"&inf_EN&" MW="&cal_MW
-%%%% if (inf_MW<>"-")and(cen_MW<40):
-%%%% &"("& decimal(num_MW-scantokens(inf_MW))&")"
-%%%% else: &"(-)" fi ,(-2bp,1.5bp));)
+%%%%ext(defaultfont:="uhvr8r"; defaultscale:=.3; label.lrt(mc,(-2bp,1.5bp));)
%***************************************************************************
beginfont("EN:Adenine","MW:135.13")
MC(<30,?6,3=?5,{1,3,5,9}=dl,{2,6,9}:N,5:/NH2,7:NH)
@@ -116,8 +111,8 @@ endfont
%***************************************************************************
beginfont("EN:Thiamine","MW:300.81")
MC(<30,Ph,4:/NH2,@3,\`1,!,<-12,?5,{-1,-4}=dl,{1,5,8}:N,11:S,{6,9}:/_,
- @-3,\,!2,OH,8:"+"^72)
- MCat(.95,.75)(Cl,"-"^15)
+ @-3,\,!2,OH,8:p_^72)
+ MCat(.95,.75)(Cl,n_^15)
endfont
%**************************************************************************
beginfont("EN:Gibberellin A3","MW:346.379");
@@ -183,8 +178,8 @@ beginfont("EN:Sudan red 1","MW:248.28")
endfont
%***************************************************************************
beginfont("EN:Basic blue 1","MW:319.86")
- MC(<30,Ph,3=Ph,6=Ph,2:S,5:N,{8,13}:/N?!,2:"+")
- MCat(1,.7)(Cl,"-"^15)
+ MC(<30,Ph,3=Ph,6=Ph,2:S,5:N,{8,13}:/N?!,2:p_)
+ MCat(1,.7)(Cl,n_^15)
endfont
%***************************************************************************
beginfont("EN:Disperse violet 1","MW:238.25")
@@ -240,9 +235,9 @@ beginfont("EN:Halfenprox","MW:477.4")
endfont
%***************************************************************************
beginfont("EN:Paraquat","MW:257.16")
- MC(Ph,@4,\,Ph,{1,10}:N!,1:"+"^-90,10:"+"^90)
- MCat(1,.75)(Cl,"-"^15)
- MCat(1,.60)(Cl,"-"^15)
+ MC(Ph,@4,\,Ph,{1,10}:N!,1:p_^-90,10:p_^90)
+ MCat(1,.75)(Cl,n_^15)
+ MCat(1,.60)(Cl,n_^15)
endfont
%***************************************************************************
beginfont("EN:Picolinafen","MW:376.331")
@@ -484,9 +479,9 @@ endfont
%***************************************************************************
beginfont("EN:Cefalonium","MW:458.5107")
MC(<45,?4,-3=?6,-4=dl,2:N,8:S,
- 3^45:/*H,1://O^15,@5,\*,//O,!,O,"-"^40,
+ 3^45:/*H,1://O^15,@5,\*,//O,!,O,n_^40,
@4,*\^15,NH,!,//O,!2,?5,{-1,-3}=dl,-4:S,
- @6,\,!,|,Ph,1:N,1:"+"^180,@4,\,//O,!,NH2)
+ @6,\,!,|,Ph,1:N,1:p_^180,@4,\,//O,!,NH2)
endfont
%***************************************************************************
beginfont("EN:Cefazorin","MW:454.51")
@@ -498,9 +493,9 @@ endfont
%***************************************************************************
beginfont("EN:Cefquinome","MW:528.6")
MC(<45,?4,-3=?6,-4=dl,2:N,8:S,
- 3^45:/*H,1://O^15,@5,\*,//O,!,O,"-"^40,
+ 3^45:/*H,1://O^15,@5,\*,//O,!,O,n_^40,
@4,*\^15,NH,!,//O,!,//'(N,!,O,!),!,?5,{-2,-5}=dl,-3:S,-1:N,-2:/NH2,
- @6,\,!,Ph,-2=?6,-10:N,-10:"+"^180)
+ @6,\,!,Ph,-2=?6,-10:N,-10:p_^180)
endfont
%***************************************************************************
beginfont("EN:Ceftiofur","MW:523.5626")
@@ -803,7 +798,7 @@ beginfont("EN:illudin S","MW:264.3")
endfont
%***************************************************************************
beginfont("EN:Muscarine","MW:174.26")
- MC(<18,?5,2:O,1:*/_,5:/*OH,@3,*\,48,N,??,"+"^180,!)
+ MC(<18,?5,2:O,1:*/_,5:/*OH,@3,*\,48,N,??,p_^180,!)
endfont
%***************************************************************************
beginfont("EN:Psilocybin","MW:284.248")
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf
index 71e5a0dfb0f..ba142e98185 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf
Binary files differ
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf
index 0f99177e283..3a2da782e28 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf
@@ -1,128 +1,134 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Molecular Coding Format file for mcf_manual.tex by Akira.Yamaji 2021.02.11
+% Molecular Coding Format file for mcf_manual.tex by Akira.Yamaji 2021.02.21
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-input mcf2graph.mf; %% it must be version 4.57
-message "mcf_man_soc 2021.01.31"; message "";
+input mcf2graph.mf; %% it must be version 4.578
+message "mcf_man_soc 2021.02.21"; message "";
%------------------------------------------------------------------------
sw_mframe:=0;
sw_expand:=0;
%%%%sw_aux_out:=0;
%%%%sw_rep_out:=1;
-%ext(defaultscale:=.5; label.bot(decimal(char_num)&":"&inf_EN,(.5w,0));)
+%%%%ext(defaultscale:=.5; label.bot(decimal(char_num)&":"&inf_EN,(.5w,0));)
+%%%%ext(defaultscale:=.5; label.bot(mc,(.5w,0));)
%***********************************************************************
fsize:=(40mm,25mm);
blength:=6mm;
%***********************************************************************
-beginfont("EN:Glycine")
- MC(<30,NH2,!2,COOH)
+beginfont("EN:Glycine",":<30,NH2,!2,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Alanine")
- MC(<30,NH2,!~wb,/_,!,COOH)
+beginfont("EN:L-Alanine",":<30,NH2,!~wb,/_,!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Valine")
- MC(<30,NH2,!~wb,/!?!,!,COOH)
+beginfont("EN:L-Valine",":<30,NH2,!~wb,/!?!,!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Leucine")
- MC(<30,NH2,!~wb,/!?!,!,COOH)
+beginfont("EN:L-Leucine",":<30,NH2,!~wb,/!?!,!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Isoleucine")
- MC(<30,NH2,!~wb,/'(/*_,!2),!,COOH)
+beginfont("EN:L-Isoleucine",":<30,NH2,!~wb,/'(/*_,!2),!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Serine")
- MC(<30,NH2,!~wb,/!OH,!,COOH)
+beginfont("EN:L-Serine",":<30,NH2,!~wb,/!OH,!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Threonine")
- MC(<30,NH2,!~wb,/'(/_,!~wf,OH),!,COOH)
+beginfont("EN:L-Threonine",":<30,NH2,!~wb,/'(/_,!~wf,OH),!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Cysteine")
- MC(<30,NH2,!~wb,/!SH,!,COOH)
+beginfont("EN:L-Cysteine",":<30,NH2,!~wb,/!SH,!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Methionine")
- MC(<30,NH2,!~wb,/'(!2,S,!),!,COOH)
+beginfont("EN:L-Methionine",":<30,NH2,!~wb,/'(!2,S,!),!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Phenylalanine")
- MC(<30,NH2,!~wb,/!Ph,!,COOH)
+beginfont("EN:L-Phenylalanine",":<30,NH2,!~wb,/!Ph,!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Tyrosine")
- MC(<30,NH2,!~wb,/'(!Ph,-3:/OH),!,COOH)
+beginfont("EN:L-Tyrosine",":<30,NH2,!~wb,/'(!Ph,-3:/OH),!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Triptophan")
- MC(<30,NH2,!~wb,!,COOH,@2,\,!,<24,|,?5,-4=Ph,2=dr,5=dl,4:NH)
+beginfont("EN:L-Triptophan",
+ ":<30,NH2,!~wb,!,COOH,@2,\,!,<24,|,?5,-4=Ph,2=dr,5=dl,4:NH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Prorine")
- MC(<18,?5,3:NH,4:*/COOH)
+beginfont("EN:L-Prorine",":<18,?5,3:NH,4:*/COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Glutamine")
- MC(<30,NH2,!~wb,!,COOH,@2,\`1,!`1,!,//O,!,NH2)
+beginfont("EN:L-Glutamine",
+ ":<30,NH2,!~wb,!,COOH,@2,\`1,!`1,!,//O,!,NH2")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Asparagine")
- MC(<30,NH2,!~wb,/'(!,//O,!,NH2),!,COOH)
+beginfont("EN:L-Asparagine",":<30,NH2,!~wb,/'(!,//O,!,NH2),!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Aspartic acid")
- MC(<30,NH2,!~wb,/!COOH,!,COOH)
+beginfont("EN:L-Aspartic acid",":<30,NH2,!~wb,/!COOH,!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Glutamic acid")
- MC(<30,NH2,!~wb,/'(!2,COOH),!,COOH)
+beginfont("EN:L-Glutamic acid",":<30,NH2,!~wb,/'(!2,COOH),!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Lysine")
- MC(<30,NH2,!~wb,/'(!4,NH2),!,COOH)
+beginfont("EN:L-Lysine",":<30,NH2,!~wb,/'(!4,NH2),!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Arginine")
- MC(<30,NH2,!~wb,!,COOH,@2,\`1,!`1,!2,NH,!,//NH,!,NH2)
+beginfont("EN:L-Arginine",
+ ":<30,NH2,!~wb,!,COOH,@2,\`1,!`1,!2,NH,!,//NH,!,NH2")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Hystidine")
- MC(<30,NH2,!~wb,!,COOH,@2,\,!,|,?5,{1,3}=dl,3:N,5:NH)
+beginfont("EN:L-Hystidine",
+ ":<30,NH2,!~wb,!,COOH,@2,\,!,|,?5,{1,3}=dl,3:N,5:NH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-DOPA")
- MC(<30,NH2,!~wb,!,COOH,@2,\,!,Ph,{-3,-4}:/OH)
+beginfont("EN:L-DOPA",":<30,NH2,!~wb,!,COOH,@2,\,!,Ph,{-3,-4}:/OH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:Ornithine")
- MC(<30,NH2,!~wb,/'(!3,NH2),!,COOH)
+beginfont("EN:Ornithine",":<30,NH2,!~wb,/'(!3,NH2),!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:Citrulline")
- MC(<30,NH2,!~wb,/'(!3,NH,!,//O,!,NH2),!,COOH)
+beginfont("EN:Citrulline",":<30,NH2,!~wb,/'(!3,NH,!,//O,!,NH2),!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:GABA")
- MC(<30,NH2,!4,COOH)
+beginfont("EN:GABA",":<30,NH2,!4,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:amino Levulinic acid")
- MC(<30,NH2,!2,//O,!3,COOH)
+beginfont("EN:amino Levulinic acid",":<30,NH2,!2,//O,!3,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:4-amino benzoic acid")
- MC(<30,Ph,1:/NH2,4:/COOH)
+beginfont("EN:4-amino benzoic acid",":<30,Ph,1:/NH2,4:/COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Carboxyl glutamic acid")
- MC(<30,NH2,!~wb,/'(!,/COOH,!,COOH),!,COOH)
+beginfont("EN:L-Carboxyl glutamic acid",
+ ":<30,NH2,!~wb,/'(!,/COOH,!,COOH),!,COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
-beginfont("EN:L-Hydroxy Prorine")
- MC(<18,?5,1:/OH,3:NH,4:*/COOH)
+beginfont("EN:L-Hydroxy Prorine",":<18,?5,1:/OH,3:NH,4:*/COOH")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***********************************************************************
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
@@ -376,7 +382,7 @@ endfont
beginfont("EN:Charged atom")
sw_trimming:=1;
fsize:=(60mm,12mm);
- MC(<-30,!2,N,??,"+",!2,S,"-"^180,!6,7:N,7:??,9:S,7:"+",9:"-"^180)
+ MC(<-30,!2,N,??,p_,!2,S,n_^180,!6,7:N,7:??,9:S,7:p_,9:n_^180)
endfont
%***********************************************************************
beginfont("EN:fused ring")
@@ -883,25 +889,25 @@ beginfont("EN:Switwch bondtype off")
endfont
%***********************************************************************
beginfont("EN:Switwch font frame 1")
- fsize:=(40mm,10mm);
+ fsize:=(30mm,10mm);
fmargin:=(5mm,1.5mm);
sw_fframe:=1;
MC(<30,Ph)
endfont
beginfont("EN:Switwch font frame 2")
- fsize:=(40mm,10mm);
+ fsize:=(30mm,10mm);
fmargin:=(5mm,1.5mm);
sw_fframe:=2;
MC(<30,Ph)
endfont
beginfont("EN:Switwch font frame 3")
- fsize:=(40mm,10mm);
+ fsize:=(30mm,10mm);
fmargin:=(5mm,1.5mm);
sw_fframe:=3;
MC(<30,Ph)
endfont
beginfont("EN:Switwch font frame 4")
- fsize:=(40mm,10mm);
+ fsize:=(30mm,10mm);
fmargin:=(5mm,1.5mm);
sw_fframe:=4;
MC(<30,Ph)
@@ -962,23 +968,33 @@ endfont
%-----------------------------------------------------------------------
beginfont("EN:MCat()")
defaultsize:=5bp;
- fsize:=(75mm,75mm);
+ fsize:=(40mm,40mm);
fmargin:=(3mm,3mm);
- blength:=0.07;
+ blength:=0.1;
sw_fframe:=1;
mangle:=0;
- for i=1 step -0.25 until 0:
- for j=0 step 0.25 until 1:
+ for i=1 step -0.5 until 0:
+ for j=0 step 0.5 until 1:
MCat(j,i)(Ph,4:N)
add(
drawarrow((A1+A1up**aw)..A1);
label(decimal(mangle),p0+(0.5w,0.5h));
)
- mangle:=mangle+15;
+ mangle:=mangle+30;
endfor
endfor
endfont
%***********************************************************************
+beginfont("EN:Pyridine",":<30,Ph,2:N")
+ fsize:=(12mm,12mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
+endfont
+%-----------------------------------------------------------------------
+beginfont("EN:Pyridine",":<30,Ph,2):N")
+ fsize:=(12mm,12mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
+endfont
+%***********************************************************************
beginfont("EN:add() 1")
fsize:=(70mm,43mm);
sw_aframe:=sw_mframe:=1;
@@ -1097,102 +1113,115 @@ beginfont("EN:?6")
endfont
defaultsize:=save_defaultsize;
%***************************************************************************
-beginfont("EN:Luciferin","MW:280.33")
- fsize:=(60mm,20mm);
- MC(
- <30,Ph,3=?5,@8,\,?5,{9,16}=dl,
- {9,14}:N,{7,11}:S,1:/OH,-2:*/COOH
- )
+beginfont("EN:Luciferin","MW:280.33",
+ %---------------------------------------
+ ": <30,Ph,3=?5,@8,\,?5,{9,16}=dl, ",
+ ": {9,14}:N,{7,11}:S,1:/OH,-2:*/COOH ")
+ %---------------------------------------
+ fsize:=(50mm,15mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***************************************************************************
-beginfont("EN:Colchicine","MW:385.41")
- fsize:=(60mm,25mm);
- MC(
- <30,Ph,{1,2,6}:/O!,-4=?7,-5=?7,{-1,-4,-6}=dl,-2://O,-3:/O!,
- @9,\,NH,!,//O,!
- )
+beginfont("EN:Colchicine","MW:385.41",
+ %---------------------------------------
+ ": <30,Ph,{1,2,6}:/O!,-4=?7,-5=?7, ",
+ ": {-1,-4,-6}=dl,-2://O,-3:/O!, ",
+ ": @9,\,NH,!,//O,! ")
+ %---------------------------------------
+ fsize:=(50mm,20mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***************************************************************************
-beginfont("EN:Paclitaxel","MW:853.91")
- MC(
- ?6,5=dl,@3,#1,36,45,45,45,45,##,
- &($5),-4=?6,-4=?4,-1=wb,-3=wf,-1:O,||,
- 4:??,6:/_,{3^-60,15}:*/OH,8:/*H^-60,
- 9:*/_^60,10://O,
- @1,\,O,!,//O,!,*/OH,!,/Ph,60~wf,NH,-60,//O,60,Ph,
- @7,\*,O,-45,//O,60,Ph,@11,*\,O,-60,//O,60,
- @12,\*^-15,O,60,//O,-60
- )
+beginfont("EN:Paclitaxel","MW:853.91",
+ %------------------------------------------------------
+ ": ?6,5=dl,@3,#1,36,45,45,45,45,##, ",
+ ": &($5),-4=?6,-4=?4,-1=wb,-3=wf,-1:O,||, ",
+ ": 4:??,6:/_,{3^-60,15}:*/OH,8:/*H^-60, ",
+ ": 9:*/_^60,10://O, ",
+ ": @1,\,O,!,//O,!,*/OH,!,/Ph,60~wf,NH,-60,//O,60,Ph, ",
+ ": @7,\*,O,-45,//O,60,Ph,@11,*\,O,-60,//O,60, ",
+ ": @12,\*^-15,O,60,//O,-60 ")
+ %------------------------------------------------------
+ fsize:=(50mm,25mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***************************************************************************
-beginfont("EN:Lycorine","MW:287.31")
- fsize:=(60mm,25mm);
- MC(<30,
- Ph,-4=?6,-2=?6,6=?5,(9,12)=?5[3],
- 13=dl,8:N,{15,17}:O,
- 9:/*H^180,10:*/H^60,13:*/OH,14:/*OH
- )
-endfont
-%***********************************************************************
-beginfont("EN:Gibberellin A3","MW:346.37");
- fsize:=(60mm,20mm);
- MC(
- <18,?5,3=?7,5=?6[12],@8,160`1.3,&3,
- 13=dl,6=wf,8=wb,
- @5,40~zf`1,O,50,//O^180,&14~zb,
- 2:/COOH,7://_,13:*/OH,8:/*OH,
- 14:*/_,{1,4}:*/H^60
- )
+beginfont("EN:Lycorine","MW:287.31",
+ %-----------------------------------------
+ ": <30,Ph,-4=?6,-2=?6,6=?5,(9,12)=?5[3], ",
+ ": 13=dl,8:N,{15,17}:O, ",
+ ": 9:/*H^180,10:*/H^60,13:*/OH,14:/*OH ")
+ %-----------------------------------------
+ fsize:=(50mm,20mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
+endfont
+%***********************************************************************
+beginfont("EN:Gibberellin A3","MW:346.37",
+ %----------------------------------------
+ ": <18,?5,3=?7,5=?6[12],@8,160`1.3,&3, ",
+ ": 13=dl,6=wf,8=wb, ",
+ ": @5,40~zf`1,O,50,//O^180,&14~zb, ",
+ ": 2:/COOH,7://_,13:*/OH,8:/*OH, ",
+ ": 14:*/_,{1,4}:*/H^60 ")
+ %----------------------------------------
+ fsize:=(50mm,18mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***************************************************************************
-beginfont("EN:Quinine","MW:324.42")
- fsize:=(60mm,25mm);
- MC(
- <30,Ph,3=Ph,7:N,6:/O!,
- @10,\,*/OH,/H~zf^-60,!,
- |,?6,2:N,1:*/H^60,4:*/!!,
- @2,165~zf,60,&5~zb
- )
+beginfont("EN:Quinine","MW:324.42",
+ %----------------------------------------
+ ": <30,Ph,3=Ph,7:N,6:/O!, ",
+ ": @10,\,*/OH,/H~zf^-60,!, ",
+ ": |,?6,2:N,1:*/H^60,4:*/!!, ",
+ ": @2,165~zf,60,&5~zb ")
+ %----------------------------------------
+ fsize:=(50mm,20mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
%***************************************************************************
sw_calc:=1;
ext(defaultfont:="uhvr8r"; defaultscale:=.75;
- label.urt("NO = "&decimal(char_num),(0.1w,0.60h));
- label.urt("EN = "&inf_EN ,(0.1w,0.56h));
- label.urt("MW = "&inf_MW ,(0.1w,0.52h));
- label.urt("mw = "&cal_MW ,(0.1w,0.48h));
- label.urt("fm = "&cal_FM ,(0.1w,0.44h));
- label.urt("w = "&decimal(w) ,(0.1w,0.40h));
- label.urt("h = "&decimal(h) ,(0.1w,0.36h));
- label.urt("n = "&decimal(n) ,(0.1w,0.32h));
+ label.urt("NO = "&decimal(char_num),(0.01w,0.60h));
+ label.urt("EN = "&inf_EN ,(0.01w,0.57h));
+ label.urt("MW = "&inf_MW ,(0.01w,0.54h));
+ label.urt("mw = "&cal_MW ,(0.01w,0.51h));
+ label.urt("fm = "&cal_FM ,(0.01w,0.48h));
+ label.urt("w = "&decimal(w) ,(0.01w,0.45h));
+ label.urt("h = "&decimal(h) ,(0.01w,0.42h));
+ label.urt("n = "&decimal(n) ,(0.01w,0.39h));
label.urt("ratio_thickness_bond = "&decimal(ratio_thickness_bond),
- (0.1w,0.28h));
+ (0.01w,0.36h));
label.urt("ratio_atom_bond = "&decimal(ratio_atom_bond),
- (0.1w,0.24h));
+ (0.01w,0.33h));
label.urt("ratio_bondgap_bond = "&decimal(ratio_bondgap_bond),
- (0.1w,0.20h));
+ (0.01w,0.30h));
label.urt("ratio_chain_ring = "&decimal(ratio_chain_ring),
- (0.1w,0.16h));
- label.urt("sw_fframe = "&decimal(sw_fframe),(0.1w,0.12h));
- label.urt("sw_aframe = "&decimal(sw_aframe),(0.1w,0.08h));
- label.urt("sw_trimming = "&decimal(sw_trimming),(0.1w,0.04h));
+ (0.01w,0.27h));
+ label.urt("sw_fframe = "&decimal(sw_fframe),(0.01w,0.24h));
+ label.urt("sw_aframe = "&decimal(sw_aframe),(0.01w,0.21h));
+ label.urt("sw_trimming = "&decimal(sw_trimming),(0.01w,0.18h));
+ label.urt("mc1 ="&mc1,(0.01w,0.12h));
+ label.urt("mc2 ="&mc2,(0.01w,0.09h));
+ label.urt("mc3 ="&mc3,(0.01w,0.06h));
)
%***************************************************************************
-beginfont("EN:Ampicillin","MW:349.405")
- fsize:=(60mm,90mm);
- MCat(0.5,1)(<45,?4,-3=?5,2:N,7:S,
- {3^45,4^-45}:/*H,1://O^15,5:/*COOH^-18,6:??,
- @4,*\^75,NH,!,//O,!,/*NH2,!,Ph)
+beginfont("EN:Ampicillin","MW:349.405",
+": <45,?4,-3=?5,2:N,7:S,",
+": 3^45:/*H,1://O^15,5:/*COOH^-18,6:??,",
+": @4,*\^15,NH,!,//O,!,/*NH2,!,Ph"
+)
+ fsize:=(72mm,110mm);
+ blength:=7mm;
+ if check_mc(mc)=0: MCat(0.5,0.95)(scantokens(mc)) fi
endfont
%***************************************************************************
-beginfont("EN:Cholesterol","CAS:57-88-5","FM:C27H46O","MW:386.65")
- fsize:=(60mm,90mm);
- MCat(0.5,1)(
- <30,?6,{-4,-2}=?6,-4=?5,7=dl,
- 1:*/OH,{4,12}:*/_^60,9:*/H^60,
- 10:/*H^180,11:/*H^-60,17:/*H^-54,
- @-1,18,/*_,-60,!3,?!
- )
+beginfont("EN:Cholesterol","MW:386.65",
+ ": <30,?6,{-4,-2}=?6,-4=?5,7=dl, ",
+ ": 10:/*H^180,11:/*H^-60,17:/*H^-54, ",
+ ": 1:*/OH,{4,12}:*/_^60,@-1,18,/*_,-60,!3,?!")
+ fsize:=(72mm,110mm);
+ blength:=7mm;
+ if check_mc(mc)=0: MCat(0.5,0.95)(scantokens(mc)) fi
endfont
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
bye
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf
index 9e3950eeff1..5b295a87bb1 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf
Binary files differ
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
index ef6c9b124f8..aea619862ad 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
@@ -1,5 +1,5 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Molecular Coding Format manual by Akira Yamaji 2021.02.11
+% Molecular Coding Format manual by Akira Yamaji 2021.02.21
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[a4paper]{article}
\usepackage[pdftex]{graphicx}
@@ -52,9 +52,9 @@
}%
%---------------------------------------------------------------------------
\def\put@char{%
- \begin{picture}(75,110)%
- \put(0,100){\bf [\NO]\EN}%
- \put(5,95){\small\tt FM:\fm{ }MW:\mw}%
+ \begin{picture}(75,130)%
+ \put(0,120){\bf [\NO]\EN}%
+ \put(5,115){\small\tt FM:\fm{ }MW:\mw}%
\put(5,0){\font\@strufont=\File\relax%
\hbox{\@strufont\char\Char}}%
\end{picture}%
@@ -394,10 +394,10 @@ exact mass, molecular formula.
%-----------------------------------------------------------------------------
\subsubsection{Charged atom}
\begin{verbatim}
- "+" : positive / "-" : negative
+ p_ : positive / n_ : negative
-<-30,!2,N,??,"+",!2,S,"-"^180,
-!6,7:N,7:??,9:S,7:"+",9:"-"^180
+<-30,!2,N,??,p_,!2,S,n_^180,
+!6,7:N,7:??,9:S,7:n_,9:n_^180
\end{verbatim}
\MCFgraph
%-----------------------------------------------------------------------------
@@ -902,7 +902,7 @@ exact mass, molecular formula.
0.06 0.12 0.20
\end{verbatim}
%-----------------------------------------------------------------------------
-\newpage
+%%\newpage
%-----------------------------------------------------------------------------
\subsection{Drawing mode}
%-----------------------------------------------------------------------------
@@ -989,7 +989,7 @@ MCat(1, .5)(<30,Ph,4:/COOH,3:/NH2)
\end{verbatim}
\MCFgraph
\begin{verbatim}
- (Draw frame inside margin)
+ (Frame inside margin)
sw_fframe=2
\end{verbatim}
\MCFgraph
@@ -999,7 +999,7 @@ MCat(1, .5)(<30,Ph,4:/COOH,3:/NH2)
\end{verbatim}
\MCFgraph
\begin{verbatim}
- (Draw small dot at corner)
+ (Small dot at corner)
sw_fframe=4
\end{verbatim}
\MCFgraph
@@ -1018,6 +1018,28 @@ MCat(1, .5)(<30,Ph,4:/COOH,3:/NH2)
MC(<30,COOH,!,COOH)
\end{verbatim}
\MCFgraph
+%-----------------------------------------------------------------------------
+\subsubsection{Remove indent}
+\index{sw\_indent\_off}%
+\begin{verbatim}
+ ** default sw_indent_off=0
+ beginfont(": Ph ",
+ ": ,{1,4}:N ",
+ ": ,{2,3}:/_ ")
+ endfont
+
+ mc1=" Ph"
+ mc2=" ,{1,4}:N"
+ mc3=" ,{2,3}:/_"
+
+ sw_indent_off=1
+ mc1="Ph"
+ mc2=",{1,4}:N"
+ mc3=",{2,3}:/_"
+
+ mc="Ph,{1,4}:N,{2,3}:/_" ** 0 or 1
+\end{verbatim}
+%-----------------------------------------------------------------------------
\newpage
%-----------------------------------------------------------------------------
\subsection{Parameter setting}
@@ -1085,36 +1107,53 @@ MCat(1, .5)(<30,Ph,4:/COOH,3:/NH2)
MCat(c,d)(....) :
- mposition:=(c,d);
- MC(....)
+ mposition:=(c,d); MC(....)
- c: x axis position
- d: y axis position
+ c: x axis position d: y axis position
- beginfont()
defaultsize:=5bp;
- fsize:=(75mm,75mm);
- fmargin:=(3mm,3mm);
- blength:=0.07;
- sw_fframe:=1;
+ fsize:=(40mm,40mm); fmargin:=(3mm,3mm);
+ blength:=0.1; sw_fframe:=1;
mangle:=0;
- for i=1 step -0.25 until 0:
- for j=0 step 0.25 until 1:
- %----------------
+ for i=1 step -0.5 until 0:
+ for j=0 step 0.5 until 1:
MCat(j,i)(Ph,4:N)
- %----------------
- add(
- drawarrow((A1+A1up**aw)..A1);
- label(decimal(mangle),
- p0+(0.5w,0.5h));
+ add(drawarrow((A1+A1up**aw)..A1);
+ label(decimal(mangle),
+ p0+(0.5w,0.5h));
)
- mangle:=mangle+15;
+ mangle:=mangle+30;
endfor
endfor
- endfont
\end{verbatim}
\MCFgraph
+%-----------------------------------------------------------------------------
+\subsection{Function check\_mc()}
+\index{check\_mc()}%
+\begin{verbatim}
+ (immediately compile)
+
+ beginfont("EN:Pyridine")
+ MC(Ph,<30,2:N)
+ endfont
+
+ (check mcf and compile)
+
+ beginfont("EN:Pyridine",":<30,Ph,2:N")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
+ endfont
+
+ ** error in mcf check_mc(mc)=1
+ beginfont("EN:Pyridine",":<30,Ph,2):N")
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
+ endfont
+
+\end{verbatim}
+\MCFgraph\hspace{15mm}\MCFgraph
+\begin{verbatim}
+ check_mc(mc)=0 check_mc(mc)>=1
+\end{verbatim}
%===============================================================================
\newpage
\subsection{Function add()}
@@ -1380,44 +1419,51 @@ endfont
\section{MCF example}
%-----------------------------------------------------------------------------
\subsection{Luciferin}
-\begin{verbatim}
-beginfont("EN:Luciferin","MW:280.33")
- fsize:=(60mm,20mm);
- MC(
- <30,Ph,3=?5,@8,\,?5,{9,16}=dl,
- {9,14}:N,{7,11}:S,1:/OH,-2:*/COOH
- )
+\index{check\_mc()}%
+\begin{verbatim}
+beginfont("EN:Luciferin","MW:280.33",
+ %-------------------------------------
+ ": <30,Ph,3=?5,@8,\,?5,{9,16}=dl, ",
+ ": {9,14}:N,{7,11}:S,1:/OH,-2:*/COOH ")
+ %-------------------------------------
+ fsize:=(50mm,20mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
\end{verbatim}
\MCFgraph
%-----------------------------------------------------------------------------
\subsection{Colchicine}
\begin{verbatim}
-beginfont("EN:Colchicine","MW:385.41")
- fsize:=(60mm,25mm);
- MC(
- <30,Ph,{1,2,6}:/O!,-4=?7,
- -5=?7,{-1,-4,-6}=dl,
- -2://O,-3:/O!,
- @9,\,NH,!,//O,!
- )
+beginfont("EN:Colchicine","MW:385.41",
+ %-------------------------------------
+ ": <30,Ph,{1,2,6}:/O!,-4=?7,-5=?7, ",
+ ": {-1,-4,-6}=dl,-2://O,-3:/O!, ",
+ ": @9,\,NH,!,//O,! ")
+ %-------------------------------------
+ fsize:=(50mm,20mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
\end{verbatim}
\MCFgraph
%-----------------------------------------------------------------------------
\subsection{Paclitaxel}
\begin{verbatim}
-beginfont("EN:Paclitaxel","MW:853.91")
- MC(
- ?6,5=dl,@3,#1,36,45,45,45,45,##,
- &.$5,-4=?6,-4=?4,-1=wb,-3=wf,-1:O,||,
- {4^35,4^-35,6}:/_,{3^-60,15}:*/OH,
- 8:/*H^-60,9:*/_^60,10://O,
- @1,\,O,!,//O,!,*/OH,!,/Ph,
- 60~wf,NH,-60,//O,60,Ph,
- @7,\*,O,-45,//O,60,Ph,
- @11,*/OCO!>rl,12:/*OCO!^-15>lr
- )
+beginfont("EN:Paclitaxel","MW:853.91",
+ %------------------------------------
+ ": ?6,5=dl,@3,#1,36,45,45,45,45,##, ",
+ ": &.$5", ",
+ ": -4=?6,-4=?4,-1=wb,-3=wf,-1:O,||, ",
+ ": 4:??,6:/_,{3^-60,15}:*/OH, ",
+ ": 8:/*H^-60,", ",
+ ": 9:*/_^60,10://O, ",
+ ": @1,\,O,!,//O,!,*/OH,!,/Ph,60~wf, ",
+ ": NH,-60,//O,60,Ph, ",
+ ": @7,\*,O,-45,//O,60,Ph, ",
+ ": @11,*\,O,-60,//O,60, ",
+ ": @12,\*^-15,O,60,//O,-60 ")
+ %------------------------------------
+ fsize:=(50mm,25mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
\end{verbatim}
\MCFgraph
@@ -1425,27 +1471,30 @@ endfont
\subsection{Lycorine}
\begin{verbatim}
beginfont("EN:Lycorine","MW:287.31")
- fsize:=(60mm,25mm);
- MC(<30,
- Ph,-4=?6,-2=?6,6=?5,(9,12)=?5[3],
- 13=dl,8:N,{15,17}:O,
- 9:/*H^180,10:*/H^60,13:*/OH,14:/*OH
- )
+ %--------------------------------------
+ ": Ph,-4=?6,-2=?6,6=?5,(9,12)=?5[3], ",
+ ": 13=dl,8:N,{15,17}:O, ",
+ ": 9:/*H^180,10:*/H^60, ",
+ ": 13:*/OH,14:/*OH ")
+ %--------------------------------------
+ fsize:=(50mm,20mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
\end{verbatim}
\MCFgraph
%-----------------------------------------------------------------------------
\subsection{Gibberellin}
\begin{verbatim}
-beginfont("EN:Gibberellin","MW:346.37");
- fsize:=(60mm,20mm);
- MC(
- <18,?5,3=?7,5=?6[12],@8,160`1.3,&3,
- 13=dl,6=wf,8=wb,
- @5,40~zf`1,O,50,//O^180,&14~zb,
- 2:/COOH,7://_,13:*/OH,8:/*OH,
- 14:*/_,{1,4}:*/H^60
- )
+beginfont("EN:Gibberellin A3","MW:346.37");
+ %----------------------------------------
+ ": <18,?5,3=?7,5=?6[12],@8,160`1.3,&3, ",
+ ": 13=dl,6=wf,8=wb, ",
+ ": @5,40~zf`1,O,50,//O^180,&14~zb, ",
+ ": 2:/COOH,7://_,13:*/OH,8:/*OH, ",
+ ": 14:*/_,{1,4}:*/H^60 ")
+ %----------------------------------------
+ fsize:=(50mm,18mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
\end{verbatim}
\MCFgraph
@@ -1453,13 +1502,14 @@ endfont
\subsection{Quinine}
\begin{verbatim}
beginfont("EN:Quinine","MW:324.42")
- fsize:=(60mm,25mm);
- MC(
- <30,Ph,3=Ph,7:N,6:/O!,
- @10,\,*/OH,/H~zf^-60,!,
- |,?6,2:N,1:*/H^60,4:*/!!,
- @2,165~zf,60,&5~zb
- )
+ %-------------------------------
+ ": <30,Ph,3=Ph,7:N,6:/O!, ",
+ ": @10,\,*/OH,/H~zf^-60,!, ",
+ ": |,?6,2:N,1:*/H^60,4:*/!!, ",
+ ": @2,165~zf,60,&5~zb ")
+ %-------------------------------
+ fsize:=(50mm,20mm);
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
\end{verbatim}
\MCFgraph
@@ -1486,33 +1536,45 @@ tag4:="fm"; >
outputformat:="png"; hppp:=vppp:=0.1; > PNG output
outputtemplate:="%j-%3c.png"; >
%-------------------------------------------------------------------------
-beginfont("N:1","EN:Ampicillin") > begin font(information)
- MC(<45,?4,2:N,2=?5,-1:S, > begin MCF (1)
- {3^45,4^-45}:/*H,1://O^15,5:/*COOH^-18,6:??, >
- @4,75,NH,!,//O,!,/*NH,!,Ph) > end MCF
+beginfont("EN:Ampicillin","MW:349.405", > information
+ %---------------------------------------- >
+ ": <45,?4,-3=?5,2:N,7:S, ", > mc1
+ ": 3^45:/*H,1://O^15,5:/*COOH^-18,6:??, ", > mc2
+ ": @4,*\^15,NH,!,//O,!,/*NH2,!,Ph ") > mc3
+ %---------------------------------------- >
+ if check_mc(mc)=0: MC(scantokens(mc)) fi > mc=mc1&mc2&mc3
endfont > end font
%------------------------------------------------------------------------
-beginfont("N:2","EN:Cholesterol") > begin font(information)
- MC(<30,?6,{-4,-2}=?6,-4=?5,7=dl, > begin MCF (2)
- 1:*/OH,{4,12}:*/_^60,9:*/H^60, >
- 10:/*H^180,{11,-1}:/*H^-60, >
- @-1,17,/*_,!4,?!) > end MCF
+beginfont("EN:Cholesterol","MW:386.65", >information
+ %---------------------------------------- >
+ ": <30,?6,{-4,-2}=?6,-4=?5,7=dl, ", > mc1
+ ": 10:/*H^180,11:/*H^-60,17:/*H^-54, ", > mc2
+ ": {4,12}:*/_^60, ", > mc3
+ ": @-1,18,/*_,-60,!3,?! ") > mc4
+ %---------------------------------------- >
+ if check_mc(mc)=0: MC(scantokens(mc)) fi > mc=mc1&mc2&mc3
endfont > end font
%------------------------------------------------------------------------
-beginfont("N:3","EN:Limonin") > begin font(information)
- MC(<30,?6,{-3,-4}=?6, > begin MCF (3)
- -5=?3,-2=wf,-1=wb,6=?5,-4=?6,-5=wf, >
- {13,15,17,20}:O,{3,12,21}://O, >
- {4~wf^60,8~zf^60,18^35,18^-35}:/_, >
- {1^60,5^180,16^60}:/*H, >
- @14,\*,|,?5,{1,4}=dl,3:O) > end MCF
+beginfont("EN:Limonin", > information
+ %----------------------------------------- >
+ ": <30,?6,{-3,-4}=?6, ", > mc1
+ ": -5=?3,-2=wf,-1=wb,6=?5,-4=?6,-5=wf, ", > mc2
+ ": {13,15,17,20}:O,{3,12,21}://O, ", > mc3
+ ": {4~wf^60,8~zf^60,18^35,18^-35}:/_, ", > mc4
+ ": {1^60,5^180,16^60}:/*H, ", > mc5
+ ": @14,\*,|,?5,{1,4}=dl,3:O) ") > mc6
+ %----------------------------------------- >
+ if check_mc(mc)=0: MC(scantokens(mc)) fi > mc=mc1 - mc6
endfont > end font
%------------------------------------------------------------------------
-beginfont("N:4","EN:beta-carotene) > begin font(information)
- MC(<30,?6,3=dl,{3,5^35,5^-35}:/_, > begin MCF (4)
- @4,\,|,!18,{1,3,5,7,9,11,13,15,17}=dr, >
- {3,7,12,16}:/_, >
- |,?6,6=dl,2:??,6:/_) > end MCF
+beginfont("EN:beta-carotene", > information
+ %------------------------------------------ >
+ ": <30,?6,3=dl,{3,5^35,5^-35}:/_, ", > mc1
+ ": @4,\,|,!18,{1,3,5,7,9,11,13,15,17}=dr, ", > mc2
+ ": {3,7,12,16}:/_, ", > mc3
+ ": |,?6,6=dl,2:??,6:/_) ") > mc4
+ %------------------------------------------ >
+ if check_mc(mc)=0: MC(scantokens(mc)) fi > mc=mc1 - mc4
endfont > end font
%------------------------------------------------------------------------
bye
@@ -1718,60 +1780,64 @@ M END
\subsection{LuaTeX file example}
%############################################################################
\begin{verbatim}
-%--------------------------------------------------------------------
\documentclass{article}
\usepackage{luamplib}%
+\usepackage[T1]{fontenc}%
+\usepackage{textcomp}%
\mplibcodeinherit{enable}%
\mplibverbatim{enable}%
-\everymplib{if unknown Ph1:
- input mcf2graph.mf;
- mp_log_name:="temp-info.aux";
- sw_aux_out:=1;
- fi}%
-%--------------------------------------------------------------------
+\mplibnumbersystem{double}%
+\everymplib{%
+ if unknown Ph1: input mcf2graph.mf; fi
+ sw_calc:=1; sw_fframe:=4; max_blength:=4.5mm;
+ defaultfont:="uhvr8r"; defaultsize:=8bp; defaultscale:=1;
+}%
\begin{document}
\noindent%
%--------------------------------------------------------------------
\begin{mplibcode}
fsize:=(50mm,50mm);
- beginfont("NO:1","EN:Limonin","MW:470.51")
- MC(<30,
- ?6,{-3,-4}=?6,
- -5=?3,-2=wf,-1=wb,6=?5,-4=?6,-5=wf,
- {13,15,17,20}:O,{3,12,21}://O,
- {4~wf^60,8~zf^60,18^35,18^-35}:/_,
- {1^60,5^180,16^60}:/*H,
- @14,\*,|,?5,{1,4}=dl,3:O
- )
+ beginfont("NO:1","EN:Limonin","MW:470.51",
+ %----------------------------------------
+ ": <30,?6,{-3,-4}=?6, ",
+ ": -5=?3,-2=wf,-1=wb,6=?5,-4=?6,-5=wf, ",
+ ": {13,15,17,20}:O,{3,12,21}://O, ",
+ ": {4~wf^60,8~zf^60,18^35,18^-35}:/_, ",
+ ": {1^60,5^180,16^60}:/*H, ",
+ ": @14,\*,|,?5,{1,4}=dl,3:O ")
+ %----------------------------------------
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
\end{mplibcode}\\
%--------------------------------------------------------------------
\begin{mplibcode}
fsize:=(80mm,50mm);
- beginfont("NO:2","EN:beta-carotene","MW:536.87")
- MC(<30,
- ?6,3=dl,{3,5^35,5^-35}:/_,
- @4,\,|,!18,{1,3,5,7,9,11,13,15,17}=dr,
- {3,7,12,16}:/_,
- |,?6,6=dl,{6,2^35,2^-35}:/_
- )
+ beginfont("NO:2","EN:beta-carotene","MW:536.87",
+ %------------------------------------------
+ ": <30,?6,3=dl,{3,5^35,5^-35}:/_, ",
+ ": @4,\,|,!18,{1,3,5,7,9,11,13,15,17}=dr, ",
+ ": {3,7,12,16}:/_, ",
+ ": |,?6,6=dl,{6,2^35,2^-35}:/_ ")
+ %------------------------------------------
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
\end{mplibcode}\\
%--------------------------------------------------------------------
\begin{mplibcode}
fsize:=(50mm,50mm);
- beginfont("NO:3","EN:Gibberellin A3","MW:346.37");
- MC(<18,?5,3=?7,5=?6[12],
- @8,160`1.3,&3,13=dl,6=wf,8=wb,
- @5,40~zf`1,O,60,//O^180,&14~zb,
- 2:/COOH,7://_,13:*/OH,8:/*OH,
- 14:*/_,{1^60,4^60}:*/H
- )
+ beginfont("NO:3","EN:Gibberellin A3","MW:346.37",
+ %------------------------------------
+ ": <18,?5,3=?7,5=?6[12], ",
+ ": @8,160`1.3,&3,13=dl,6=wf,8=wb, ",
+ ": @5,40~zf`1,O,60,//O^180,&14~zb, ",
+ ": 2:/COOH,7://_,13:*/OH,8:/*OH, ",
+ ": 14:*/_,{1^60,4^60}:*/H ")
+ %------------------------------------
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont;
-\end{mplibcode}\\
%--------------------------------------------------------------------
+\end{mplibcode}\\
\end{document}
-%--------------------------------------------------------------------
\end{verbatim}%
%############################################################################
%------------------------------------------------------------------------
@@ -1801,16 +1867,16 @@ endfont;
%--------------------------------------------------------------------
\begin{document}
\unitlength=1mm%
-\INFO{F:mcf_man_soc,C:139,NO:1,mw:349.40462,fm:C16H19N3O4S,EN:Ampicillin}%
-\INFO{F:mcf_man_soc,C:140,NO:2,mw:386.6532,fm:C27H46O,EN:Cholesterol}%
+\INFO{F:mcf_man_soc,C:141,NO:1,mw:349.40462,fm:C16H19N3O4S,EN:Ampicillin}%
+\INFO{F:mcf_man_soc,C:142,NO:2,mw:386.6532,fm:C27H46O,EN:Cholesterol}%
\end{document}
%--------------------------------------------------------------------
\end{verbatim}%
%############################################################################
%------------------------------------------------------------------------
-\INFO{F:mcf_man_soc,C:139,NO:1,mw:349.40462,fm:C16H19N3O4S,EN:Ampicillin}%
-\INFO{F:mcf_man_soc,C:140,NO:2,mw:386.6532,fm:C27H46O,EN:Cholesterol}%
+\INFO{F:mcf_man_soc,C:141,NO:1,mw:349.40462,fm:C16H19N3O4S,EN:Ampicillin}%
+\INFO{F:mcf_man_soc,C:142,NO:2,mw:386.6532,fm:C27H46O,EN:Cholesterol}%
%------------------------------------------------------------------------
-\printindex
+\texttt{\printindex}
%------------------------------------------------------------------------
\end{document}
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf
index 71273591e41..473f7c635db 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf
Binary files differ
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex
index edf96d8953f..84731a7e018 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex
@@ -1,7 +1,7 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Example of MCF typest with LuaLaTeX(luamplib) by A.Yamaji 2021.02.11
+% Example of MCF typest with LuaLaTeX(luamplib) by A.Yamaji 2021.02.21
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%%% mcf2graph.mf must be version 4.57
+%%% mcf2graph.mf must be version 4.58
\documentclass{article}
%------------------------------------------------------------------------------
\usepackage{luamplib}%
@@ -101,30 +101,32 @@ MC(
\subsection{Chlorophyll a}
\noindent%
\begin{verbatim}
-beginfont("NO:1","EN:Chlorophyll a","MW:893.49")
+beginfont("NO:1","EN:Chlorophyll a","MW:893.49",
+ %-----------------------------------------------------------------------
+ ": <54,#1,?5,{2,5}=dl,4:N,@3,\,54~dl,|,?5,{2,4}=dl,5:N, ",
+ ": @-2,\,54~dl,|,?5,2=dl,5:N,@-2,\~dl,54,|,?5,5=dl,5:N,@-2,\~dl,&.$5, ",
+ ": @-1,24,/*COO!^15,72,//O,&.$1,##,||, ",
+ ": {2,9,15,20~zf}:/_,8:/!,14:/!!, ",
+ ": @4,\`1.45,Mg,&17,@-1,&11~vb,@-1,&23~vb, ",
+ ": @21,-6~wf,!2,//O,!,O,!2,!!,|,!13,{1,5,9,13}:/_ ")
+ %-----------------------------------------------------------------------
fsize:=(100mm,50mm);
- MC(
- <54,#1,?5,{2,5}=dl,4:N,@3,\,54~dl,|,?5,{2,4}=dl,5:N,
- @-2,\,54~dl,|,?5,2=dl,5:N,@-2,\~dl,54,|,?5,5=dl,5:N,@-2,\~dl,&.$5,
- @-1,24,/*COO!^15,72,//O,&.$1,##,||,
- {2,9,15,20~zf}:/_,8:/!,14:/!!,
- @4,\`1.45,Mg,&17,@-1,&11~vb,@-1,&23~vb,
- @21,-6~wf,!2,//O,!,O,!2,!!,|,!13,{1,5,9,13}:/_
- )
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
\end{verbatim}
%------------------------------------------------------------------------------------
\begin{mplibcode}
-beginfont("NO:1","EN:Chlorophyll a","MW:893.49")
+beginfont("NO:1","EN:Chlorophyll a","MW:893.49",
+ %-----------------------------------------------------------------------
+ ": <54,#1,?5,{2,5}=dl,4:N,@3,\,54~dl,|,?5,{2,4}=dl,5:N, ",
+ ": @-2,\,54~dl,|,?5,2=dl,5:N,@-2,\~dl,54,|,?5,5=dl,5:N,@-2,\~dl,&.$5, ",
+ ": @-1,24,/*COO!^15,72,//O,&.$1,##,||, ",
+ ": {2,9,15,20~zf}:/_,8:/!,14:/!!, ",
+ ": @4,\`1.45,Mg,&17,@-1,&11~vb,@-1,&23~vb, ",
+ ": @21,-6~wf,!2,//O,!,O,!2,!!,|,!13,{1,5,9,13}:/_ ")
+ %-----------------------------------------------------------------------
fsize:=(100mm,50mm);
- MC(
- <54,#1,?5,{2,5}=dl,4:N,@3,\,54~dl,|,?5,{2,4}=dl,5:N,
- @-2,\,54~dl,|,?5,2=dl,5:N,@-2,\~dl,54,|,?5,5=dl,5:N,@-2,\~dl,&.$5,
- @-1,24,/*COO!^15,72,//O,&.$1,##,||,
- {2,9,15,20~zf}:/_,8:/!,14:/!!,
- @4,\`1.45,Mg,&17,@-1,&11~vb,@-1,&23~vb,
- @21,-6~wf,!2,//O,!,O,!2,!!,|,!13,{1,5,9,13}:/_
- )
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
ext(
defaultscale:=0.8;
label.lrt("FM(C): "&cal_FM,(0,h-5mm));
@@ -137,29 +139,32 @@ endfont
\subsection{Gibberellin A3}
\noindent%
\begin{verbatim}
-beginfont("NO:4","EN:Gibberellin A3","MW:346.37");
+beginfont("NO:4","EN:Gibberellin A3","MW:346.37",
+ %--------------------------------------------------------
+ ": <18,?5,3=?7,5=?6[12],@8,160`1.3,&3,13=dl,6=wf,8=wb, ",
+ ": @5,40~zf`1,O,60,//O^180,&14~zb, ",
+ ": 2:/COOH,7://_,13:*/OH,8:/*OH,14:*/_,{1,4}:*/H^60 ")
+ %--------------------------------------------------------
fsize:=(120mm,20mm);
- MC(
- <18,?5,3=?7,5=?6[12],@8,160`1.3,&3,13=dl,6=wf,8=wb,
- @5,40~zf`1,O,60,//O^180,&14~zb,
- 2:/COOH,7://_,13:*/OH,8:/*OH,14:*/_,{1,4}:*/H^60
- )
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont;
\end{verbatim}
%----------------------------------------------------------------------------
\begin{mplibcode}
-beginfont("NO:4","EN:Gibberellin A3","MW:346.37");
+beginfont("NO:4","EN:Gibberellin A3","MW:346.37",
+ %--------------------------------------------------------
+ ": <18,?5,3=?7,5=?6[12],@8,160`1.3,&3,13=dl,6=wf,8=wb, ",
+ ": @5,40~zf`1,O,60,//O^180,&14~zb, ",
+ ": 2:/COOH,7://_,13:*/OH,8:/*OH,14:*/_,{1,4}:*/H^60 ")
+ %--------------------------------------------------------
fsize:=(120mm,20mm);
- MC(
- <18,?5,3=?7,5=?6[12],@8,160`1.3,&3,13=dl,6=wf,8=wb,
- @5,40~zf`1,O,60,//O^180,&14~zb,
- 2:/COOH,7://_,13:*/OH,8:/*OH,14:*/_,{1,4}:*/H^60)
- ext(
- defaultscale:=0.8;
- label.lrt("FM(C): "&cal_FM,(0,h-5mm));
- label.lrt("MW(C): "&cal_MW,(0,h-9mm));
- label.lrt("MW(D): "&inf_MW,(0,h-13mm));
- )
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
+ ext(
+ defaultscale:=0.8;
+ label.lrt("FM(C): "&cal_FM,(0,h-5mm));
+ label.lrt("MW(C): "&cal_MW,(0,h-9mm));
+ label.lrt("MW(D): "&inf_MW,(0,h-13mm));
+ )
endfont;
\end{mplibcode}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
@@ -167,60 +172,64 @@ endfont;
\noindent%
%----------------------------------------------------------------------------
\begin{verbatim}
-beginfont("NO:5","EN:Erythromycin","MW:733.93");
+beginfont("NO:5","EN:Erythromycin","MW:733.93",
+ %------------------------------------------------------------------
+ ": <30,#1,<-120,60,60,60,-60,60,60,-60,60,60,60,-60,60,60,##,&1, ",
+ ": 14:O,13:/*Et,{1,9}://O,{2,10}:*/_,{4,6^-35,8,12^35}:/*_, ",
+ ": {6^35,11,12^-35}:*/OH, ",
+ ": @.$3,\*,O,30,|,?6`.7,2:O,{3,5^35}:/_,4:/OH,5^-35:/O!, ",
+ ": @.$5,\*^30`1.7,O,!,|,?6`.7,6:O,5:/_,2:/OH,3:/N?! ")
+ %------------------------------------------------------------------
fsize:=(120mm,35mm);
- MC(
- <30,#1,<-120,60,60,60,-60,60,60,-60,60,60,60,-60,60,60,##,&1,
- 14:O,13:/*Et,{1,9}://O,{2,10}:*/_,{4,6^-35,8,12^35}:/*_,
- {6^35,11,12^-35}:*/OH,
- @.$3,\*,O,30,|,?6`.7,2:O,{3,5^35}:/_,4:/OH,5^-35:/O!,
- @.$5,\*^30`1.7,O,!,|,?6`.7,6:O,5:/_,2:/OH,3:/N?!
- )
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont;
\end{verbatim}
%----------------------------------------------------------------------------
\begin{mplibcode}
-beginfont("NO:5","EN:Erythromycin","MW:733.93");
+beginfont("NO:5","EN:Erythromycin","MW:733.93",
+ %------------------------------------------------------------------
+ ": <30,#1,<-120,60,60,60,-60,60,60,-60,60,60,60,-60,60,60,##,&1, ",
+ ": 14:O,13:/*Et,{1,9}://O,{2,10}:*/_,{4,6^-35,8,12^35}:/*_, ",
+ ": {6^35,11,12^-35}:*/OH, ",
+ ": @.$3,\*,O,30,|,?6`.7,2:O,{3,5^35}:/_,4:/OH,5^-35:/O!, ",
+ ": @.$5,\*^30`1.7,O,!,|,?6`.7,6:O,5:/_,2:/OH,3:/N?! ")
+ %------------------------------------------------------------------
fsize:=(120mm,35mm);
- MC(
- <30,#1,<-120,60,60,60,-60,60,60,-60,60,60,60,-60,60,60,##,&1,
- 14:O,13:/*Et,{1,9}://O,{2,10}:*/_,{4,6^-35,8,12^35}:/*_,
- {6^35,11,12^-35}:*/OH,
- @.$3,\*,O,30,|,?6`.7,2:O,{3,5^35}:/_,4:/OH,5^-35:/O!,
- @.$5,\*^30`1.7,O,!,|,?6`.7,6:O,5:/_,2:/OH,3:/N?!
- )
- ext(
- defaultscale:=0.8;
- label.lrt("FM(C): "&cal_FM,(0,h-5mm));
- label.lrt("MW(C): "&cal_MW,(0,h-9mm));
- label.lrt("MW(D): "&inf_MW,(0,h-13mm));
- )
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
+ ext(
+ defaultscale:=0.8;
+ label.lrt("FM(C): "&cal_FM,(0,h-5mm));
+ label.lrt("MW(C): "&cal_MW,(0,h-9mm));
+ label.lrt("MW(D): "&inf_MW,(0,h-13mm));
+ )
endfont;
\end{mplibcode}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\subsection{Paclitaxel}
\noindent%
\begin{verbatim}
-beginfont("EN:Paclitaxel","MW:853.918")
+beginfont("EN:Paclitaxel","MW:853.918",
+ %---------------------------------------------------------------------
+ ": ?6,5=dl,@3,#1,36,45,45,45,45,##,&5,-4=?6,-4=?4,-1=wb,-3=wf,-1:O, ",
+ ": 4:??,6:/_,{3^-60,15}:*/OH,8:/*H^-60,9:*/_^60,10://O, ",
+ ": @1,\,O,!,//O,!,*/OH,!,/Ph,60~wf,NH,-60,//O,60,Ph, ",
+ ": @7,\*,O,-45,//O,60,Ph,11:*/OCO!>rl,12:/*OCO!^-15>lr ")
+ %---------------------------------------------------------------------
fsize:=(120mm,35mm);
- MC(
- ?6,5=dl,@3,#1,36,45,45,45,45,##,&5,-4=?6,-4=?4,-1=wb,-3=wf,-1:O,
- 4:??,6:/_,{3^-60,15}:*/OH,8:/*H^-60,9:*/_^60,10://O,
- @1,\,O,!,//O,!,*/OH,!,/Ph,60~wf,NH,-60,//O,60,Ph,
- @7,\*,O,-45,//O,60,Ph,11:*/OCO!>rl,12:/*OCO!^-15>lr
- )
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
endfont
\end{verbatim}
%----------------------------------------------------------------------------
\begin{mplibcode}
-beginfont("EN:Paclitaxel","MW:853.918")
+beginfont("EN:Paclitaxel","MW:853.918",
+ %---------------------------------------------------------------------
+ ": ?6,5=dl,@3,#1,36,45,45,45,45,##,&5,-4=?6,-4=?4,-1=wb,-3=wf,-1:O, ",
+ ": 4:??,6:/_,{3^-60,15}:*/OH,8:/*H^-60,9:*/_^60,10://O, ",
+ ": @1,\,O,!,//O,!,*/OH,!,/Ph,60~wf,NH,-60,//O,60,Ph, ",
+ ": @7,\*,O,-45,//O,60,Ph,11:*/OCO!>rl,12:/*OCO!^-15>lr ")
+ %---------------------------------------------------------------------
fsize:=(120mm,35mm);
- MC(
- ?6,5=dl,@3,#1,36,45,45,45,45,##,&5,-4=?6,-4=?4,-1=wb,-3=wf,-1:O,
- 4:??,6:/_,{3^-60,15}:*/OH,8:/*H^-60,9:*/_^60,10://O,
- @1,\,O,!,//O,!,*/OH,!,/Ph,60~wf,NH,-60,//O,60,Ph,
- @7,\*,O,-45,//O,60,Ph,11:*/OCO!>rl,12:/*OCO!^-15>lr
- )
+ if check_mc(mc)=0: MC(scantokens(mc)) fi
ext(
defaultscale:=0.8;
label.lrt("FM(C): "&cal_FM,(0,h-5mm));