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authorKarl Berry <karl@freefriends.org>2016-05-05 22:15:28 +0000
committerKarl Berry <karl@freefriends.org>2016-05-05 22:15:28 +0000
commit4a55f10229652978387f3ed0ff6e1de158644a22 (patch)
treec01808b96fdf696a04ceebd4edca5769e441ea72 /Master/texmf-dist/doc/metapost/mcf2graph
parent3155ad2afcd7018662195b194e415a9e14e62d2a (diff)
mcf2graph (5may2016)
git-svn-id: svn://tug.org/texlive/trunk@40903 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Master/texmf-dist/doc/metapost/mcf2graph')
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG6
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/README2
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdfbin247803 -> 247968 bytes
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf98
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdfbin418448 -> 433021 bytes
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex539
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdfbin123677 -> 123911 bytes
-rw-r--r--Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex2
8 files changed, 312 insertions, 335 deletions
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG b/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG
index df5f12f2b27..622e67bbbd7 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG
@@ -1,6 +1,10 @@
*******************************************************************************
- Changelog of mcf2graph software package by Akira Yamaji 2016-05-01
+ Changelog of mcf2graph software package by Akira Yamaji 2016-05-05
*******************************************************************************
+[ver. 3.92 / 2016-05-05]
+ -Miner update
+ -update MCF syntax manual
+
[ver. 3.91 / 2016-05-01]
-add information tag and var for fixed aux file
-update MCF syntax manual
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/README b/Master/texmf-dist/doc/metapost/mcf2graph/README
index 83affcc086c..11b882c6bb8 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/README
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/README
@@ -1,7 +1,7 @@
********************************************************************************
mcf2graph : Convert Molecular Coding Format to graphics with METAFONT/METAPOST
Author : Akira Yamaji
- version : 3.91 2016-05-01
+ version : 3.92 2016-05-05
E-mail : mcf2graph@gmail.com
Located at : http://www.ctan.org/pkg/mcf2graph
********************************************************************************
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf
index d3a9644fb70..53f0ecd4cba 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf
Binary files differ
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf
index d0ba778edc9..f9bc1784425 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf
@@ -4,7 +4,7 @@
input mcf2graph.mf;
%------------------------------------------------------------------------
font_wd#:=60mm#;% font width
-font_ht#:=35mm#;% font height
+font_ht#:=40mm#;% font height
max_bond_width:=0.18;
%------------------------------------------------------------------------
sw_auxout:=0;
@@ -26,49 +26,32 @@ beginfont("NO:1","EN:Chlorophyll a","MW:893.49","FM:C55H72MgN4O5")
)
endfont
%***********************************************************************
-beginfont("EN:Chain")
+beginfont("EN:Chain 1")
sw_numberB:=1;
max_bond_width:=0.20;
ratio_chain_ring:=1;
- sw_start_vector:=1;
- MCf(<30,-60,60,-60,60,-60,60)
+ MCf(<30,-60,60,-90,120,-90,60)
endfont
%***********************************************************************
-beginfont("EN:Chain")
+beginfont("EN:Chain 2")
sw_numberB:=1;
max_bond_width:=0.20;
ratio_chain_ring:=1;
- sw_start_vector:=1;
- MCf(<30,!,!,!,!,!,!)
-endfont
-%***********************************************************************
-beginfont("EN:Chain")
- sw_numberB:=1;
- max_bond_width:=0.20;
- ratio_chain_ring:=1;
- sw_start_vector:=1;
MCf(<30,!6)
endfont
%***********************************************************************
-beginfont("EN:Jump")
- sw_numberA:=1;
- max_bond_width:=0.20;
- ratio_chain_ring:=1;
- MCf(<30,!6,3*,0,!)
-endfont
-%***********************************************************************
-beginfont("EN:Branch")
+beginfont("EN:Jump and Branch")
sw_numberA:=1;
max_bond_width:=0.20;
ratio_chain_ring:=1;
MCf(<30,!6,3\,!)
endfont
%***********************************************************************
-beginfont("EN:Connect bond")
+beginfont("EN:Connect atom")
sw_numberA:=1;
max_bond_width:=0.20;
ratio_chain_ring:=1;
- MCf(<30,!6,3\,-60,&5)
+ MCf(<30,!6,3\,!,&5)
endfont
%***********************************************************************
beginfont("EN:ring")
@@ -126,33 +109,27 @@ beginfont("EN:change atom 2")
endfont
%***********************************************************************
beginfont("EN:change atom 3")
- MCd(.5,.5)(.5,.9)(?6,4\,?6,2:N)
+ MCd(.7,1)(.5,1)(?6,4\,?6,2:N)
sw_numberA:=1;
- MCd(.5,.5)(.5,.1)(?6,4\,?6)
+ MCd(.7,1)(.5,0)(?6,4\,?6)
endfont
%***********************************************************************
-beginfont("EN:change atom 4")
- MCd(.5,.5)(.5,.9)(?6,4\,|,?6,2:N)
+beginfont("EN:change atom brock address")
+ MCd(.7,1)(.5,1)(?6,4\,|,?6,2:O,||,2:N)
sw_numberA:=1;
- MCd(.5,.5)(.5,.1)(?6,4\,?6)
+ MCd(.7,.5)(.5,0)(?6,4\,?6)
endfont
%***********************************************************************
-beginfont("EN:change atom 4")
- MCd(.5,.5)(.5,.9)(?6,4\,|,?6,||,2:N)
+beginfont("EN:change atom absolute address")
+ MCd(.7,1)(.5,1)(?6,4\,?6,#2:N)
sw_numberA:=1;
- MCd(.5,.5)(.5,.1)(?6,4\,?6)
+ MCd(.7,1)(.5,0)(?6,4\,?6)
endfont
%***********************************************************************
-beginfont("EN:change atom 5")
- MCd(.5,.5)(.5,.9)(?6,4\,?6,#2:N)
- sw_numberA:=1;
- MCd(.5,.5)(.5,.1)(?6,4\,?6)
-endfont
-%***********************************************************************
-beginfont("EN:change atom 6")
- MCd(.5,.5)(.5,.9)(?6,4\,?6,-2:N)
+beginfont("EN:change atom relative adress")
+ MCd(.7,1)(.5,1)(?6,4\,?6,-2:N)
sw_numberA:=3;
- MCd(.5,.5)(.5,.1)(?6,4\,?6)
+ MCd(.7,1)(.5,0)(?6,4\,?6)
endfont
%***********************************************************************
beginfont("EN:fused ring 1")
@@ -169,16 +146,16 @@ endfont
%***********************************************************************
beginfont("EN:fused ring 2")
sw_numberB:=1;
- MCd(1,.7)( 0,0)(<30,?6,3=?6,(11,4)=?6[4],$(11,4)dt,$(12,13,14,15)bd)
- MCd(1,.6)(.54,1)(<30,?6,3=?6,(11,4)=?5[3],$(11,4)dt,$(12,13,14)bd)
- MCd(1,.6)(1, 0)(<30,?6,3=?6,(11,4)=?4[2],$(11,4)dt,$(12,13)bd)
+ MCd(1,.62)( 0,0)(<30,?6,3=?6,(11,4)=?6[4],$(11,4)dt,$(12,13,14,15)bd)
+ MCd(1,.52)(.54,1)(<30,?6,3=?6,(11,4)=?5[3],$(11,4)dt,$(12,13,14)bd)
+ MCd(1,.52)(1, 0)(<30,?6,3=?6,(11,4)=?4[2],$(11,4)dt,$(12,13)bd)
endfont
%***********************************************************************
beginfont("EN:fused ring 3")
sw_numberB:=1;
- MCd(1,.55)(0,0)(?6,$(3,10)?6,(16,4)=?6[3],$(16,4)dt,$(17,18,19)bd)
- MCd(1,.55)(.5,1)(?6,$(3,10)?6,(16,4)=?5[2],$(16,4)dt,$(17,18)bd)
- MCd(1,.68)(1,0)(?6,$(3,10,15)?6,(21,4)=?6[2],$(21,4)dt,$(22,23)bd)
+ MCd(1,.55)(0 ,0)(?6,$(3,10)?6,(16,4)=?6[3],$(16,4)dt,$(17,18,19)bd)
+ MCd(1,.5)(.5,1)(?6,$(3,10)?6,(16,4)=?5[2],$(16,4)dt,$(17,18)bd)
+ MCd(1,.60)(1 ,0)(?6,$(3,10,15)?6,(21,4)=?6[2],$(21,4)dt,$(22,23)bd)
endfont
%***********************************************************************
beginfont("EN:Spiro ring ")
@@ -416,11 +393,11 @@ endfont
beginfont("EN:margin_top_bottom")
sw_font_frame:=sw_mol_frame:=1;
margin_top_bottom:=0mm;
- MCd(1,1)(0.1, .5)(<30,Ph,2:/OH,5:/NH2)
+ MCd(1,1)(0.0, .5)(<30,Ph,2:/OH,5:/NH2)
margin_top_bottom:=0.4mm;
MCd(1,1)(0.5, .5)(<30,Ph,2:/OH,5:/NH2)
margin_top_bottom:=5mm;
- MCd(1,1)(0.9, .5)(<30,Ph,2:/OH,5:/NH2)
+ MCd(1,1)(1.0, .5)(<30,Ph,2:/OH,5:/NH2)
endfont
%***********************************************************************
beginfont("EN:Switwch numberingA")
@@ -440,15 +417,15 @@ beginfont("EN:Switwch numberingB")
endfont
%***********************************************************************
beginfont("EN:Switwch substituent off")
- MCd(1,.6)( 0, .5)(<30,Ph,4:/Cl,3:/F)
+ MCd(1,.5)( 0, .5)(<30,Ph,4:/Cl,3:/F)
sw_subst_off:=1;
- MCd(1,.6)( 1, .5)(<30,Ph,4:/Cl,3:/F)
+ MCd(1,.5)( 1, .5)(<30,Ph,4:/Cl,3:/F)
endfont
%***********************************************************************
beginfont("EN:Switwch bondtype off")
- MCd(1,.6)( 0, .5)(<30,Ph,4:/Cl,3:/F)
+ MCd(1,.5)( 0, .5)(<30,Ph,4:/Cl,3:/F)
sw_bond_single:=1;
- MCd(1,.6)( 1, .5)(<30,Ph,4:/Cl,3:/F)
+ MCd(1,.5)( 1, .5)(<30,Ph,4:/Cl,3:/F)
endfont
%***********************************************************************
beginfont("EN:Switwch start vector")
@@ -462,9 +439,9 @@ beginfont("EN:Switwch font frame")
endfont
%***********************************************************************
beginfont("EN:Switwch molecular frame")
- MCd(1,.6)( 0, .5)(<30,Ph,4:/Cl,3:/F)
+ MCd(1,.5)( 0, .5)(<30,Ph,4:/Cl,3:/F)
sw_mol_frame:=1;
- MCd(1,.6)( 1, .5)(<30,Ph,4:/Cl,3:/F)
+ MCd(1,.5)( 1, .5)(<30,Ph,4:/Cl,3:/F)
endfont
%***********************************************************************
beginfont("EN:Switwch atom frame")
@@ -474,14 +451,15 @@ endfont
%***********************************************************************
beginfont("EN:Switwch Solid ratio")
MCd(1,.7)( 0, .5)(<30,Ph,4:/Cl,3:/F)
- sw_solid:=1; ratio_bond_width:=0.08;
+ sw_solid:=1;
+ ratio_bond_width:=0.08;
MCd(1,.7)( 1, .5)(<30,Ph,4:/Cl,3:/F)
endfont
%***********************************************************************
beginfont("EN:Switwch Expand")
- MCd(1,.6)(0, .5)(<30,Ph,4:/COOH,3:/NH2)
+ MCd(.5,.5)(0, .5)(<30,Ph,4:/COOH,3:/NH2)
sw_expand:=1;
- MCd(1,.6)(1, .5)(<30,Ph,4:/COOH,3:/NH2)
+ MCd(.6,.6)(1, .5)(<30,Ph,4:/COOH,3:/NH2)
endfont
%***********************************************************************
beginfont("EN:MCd()")
@@ -567,10 +545,6 @@ beginfont("EN:Gibberellin A3");
@(3^-60,9^60)*/H
)
endfont
-%**************************************************************************
-beginfont("EN:Capsaicin")
- MCf(<30,Ph,1:/OH,6:/OMe,4\,!,NH,!,//O,|,!8,-3=dr,-1:/Me)
-endfont
%***************************************************************************
beginfont("EN:Quinine")
MCf(<30,Ph,3=Ph,7:N,6:/OMe,
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf
index bab3f2e60ee..83e900a626c 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf
Binary files differ
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
index 12d4a4c4da4..eee609e165e 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex
@@ -1,12 +1,12 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Molecular Coding Format manual by Akira Yamaji 2016.05.01
+% Molecular Coding Format manual by Akira Yamaji 2016.05.05
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[a4paper]{article}
\usepackage[dvipdfmx]{graphicx}
%%%%\usepackage[pdftex]{graphicx}
%%%%\usepackage{epstopdf}
\topmargin=-18mm
-\textheight=255mm
+\textheight=254mm
\textwidth=168mm
\oddsidemargin=0mm
\unitlength=1mm%
@@ -14,6 +14,10 @@
%----------------------------------------------------------------------------
\newcount \fontnum%
\newcount \tempnum%
+\newdimen \htman%
+\newdimen \gpman%
+\htman=47mm%
+\gpman=4mm%
\fontnum=1%
\tempnum=1%
%----------------------------------------------------------------------------
@@ -22,10 +26,10 @@
\def\MCFtitle#1{\framebox{\sf No.\the\tempnum}\hspace{2mm}\bf #1}
%----------------------------------------------------------------------------
\def\MCFstru{%
- \rlap{\makebox(72,3.5)[t]{\makebox(68,42.3){\@strufont\char\fontnum}}}%
+ \rlap{\makebox(72,4)[t]{\makebox(68,48){\@strufont\char\fontnum}}}%
\advance\fontnum\@ne\relax}%
\def\MCFstructure{%
- \makebox(72,3.5)[t]{\frame{\makebox(68,42.3){\@strufont\char\fontnum}}}%
+ \makebox(72,4)[t]{\frame{\makebox(68,48){\@strufont\char\fontnum}}}%
\advance\fontnum\@ne\relax\advance\tempnum\@ne\relax}%
%--------------------------------------------------------------------
\def\@F{F}\def\@C{C}\def\@EN{EN}\def\@NO{NO}\def\@MW{MW}\def\@cFM{cFM}%
@@ -180,97 +184,78 @@ MW:molecular weight from literature data\vspace{5mm}\\
\newpage
%----------------------------------------------------------------------------
\noindent
-\begin{minipage}[t][37mm]{90mm}
+%-----------------------------------------------------------------------------
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Chain(1)}
\begin{verbatim}
-plus(+):anticlockwize,minus(-):clockwize
+plus (+): anticlockwize
+minus(-): clockwize
- <30,-60,60,-60,60,-60,60
+ <30,-60,60,-90,120,-90,60
- ** bold arrow is default angle and position
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
-%----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\vspace{\gpman}\\
+%-----------------------------------------------------------------------------
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Chain(2)}
\begin{verbatim}
-! : take value(60 or -60) depend on
+! : take value 60 or -60 depend on
current angle and enviroment
-
- <30,!,!,!,!,!,!
-
-\end{verbatim}
-\end{minipage}
-\MCFstructure
-\vspace{5mm}\\
-%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
-\MCFtitle{Chain(3)}
-\begin{verbatim}
!6 : !,!,!,!,!,!
+ <30,!,!,!,!,!,!
<30,!6
-** !n(0<=n<=20)
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
-\MCFtitle{Jump to atom}
+\begin{minipage}[t][\htman]{90mm}
+\MCFtitle{Jump to atom and branch bond}
\begin{verbatim}
3* : Jump to A3
+3\ : 3*,0
<30,!6,3*,0,!
+ <30,!6,3\, !
** An(-999<=n<=4095): atom number
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
-%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
-\MCFtitle{Jump to atom and branch bond}
-\begin{verbatim}
-3\ : 3*,0
-
- <30,!6,3\,!
-
-\end{verbatim}
-\end{minipage}
-\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
-\MCFtitle{Connect bond}
+\begin{minipage}[t][\htman]{90mm}
+\MCFtitle{Connect atom}
\begin{verbatim}
&5 : Connect to A5
- <30,!6,3\,-60,&5
+ <30,!6,3\,!.&5
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Ring}
\begin{verbatim}
-six membered ring
+?n : n membered ring
?6
** ?6 : <-120,60,60,60,60,60,&1
** ?n(3<=n<=20)
+ ** bold arrow is default angle and position
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Rotate current angle}
\begin{verbatim}
<angle : rotate current angle
@@ -279,13 +264,13 @@ six membered ring
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change bond type (1)}
\begin{verbatim}
a~type : ~~type,a
-dm:double,
+dm:double middle,
dl:double left side, dr:double right side,
wf:wedge forward, wb:wedge backward,
zf:wedge dotted, zb:wedge dotted backward
@@ -294,27 +279,31 @@ zf:wedge dotted, zb:wedge dotted backward
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change bond type (2)}
\begin{verbatim}
Bn=bond type : change bond type at Bn
-vf : vector forward, vb : vector backward
-tm : triple, dt : dotted
+vf : vector forward
+vb : vector backward
+tm : triple
+dt : dotted
wv : wave
<30,!6,1=vf,2=vb,3=tm,4=dt,5=bz,5=wv
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change bond type (3)}
\begin{verbatim}
-bd : broad single bz : broad dotted
-ov : over line $(2,4)dr : 2=dr,4=dr
+bd : broad single
+bz : broad dotted
+ov : over line
+$(2,4)dr : 2=dr,4=dr
<30,!5,1=bz,$(2,4)dr,
@(3~bd^-45`2,5~ov^45`2)/Me
@@ -323,9 +312,9 @@ ov : over line $(2,4)dr : 2=dr,4=dr
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change bond length (1)}
\begin{verbatim}
(!,!n,?n)`length : change length of !,!n,?n
@@ -336,9 +325,9 @@ ov : over line $(2,4)dr : 2=dr,4=dr
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change bond length (2)}
\begin{verbatim}
``length : change all bond length after
@@ -347,9 +336,9 @@ ov : over line $(2,4)dr : 2=dr,4=dr
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change ring length}
\begin{verbatim}
?n`length : change ring length
@@ -358,9 +347,9 @@ ov : over line $(2,4)dr : 2=dr,4=dr
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change atom (1)}
\begin{verbatim}
Insert hetero atom
@@ -369,9 +358,9 @@ Insert hetero atom
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change atom (2)}
\begin{verbatim}
2:O : change A2 C to O
@@ -382,9 +371,9 @@ Insert hetero atom
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change atom (3)}
\begin{verbatim}
2:N : change A2 C to N
@@ -393,31 +382,21 @@ Insert hetero atom
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
-\MCFtitle{Change atom (brock address 1)}
+\begin{minipage}[t][\htman]{90mm}
+\MCFtitle{Change atom (brock address)}
\begin{verbatim}
| : divide brock
-
-?6,4\,|,?6,2:N,
-\end{verbatim}
-\end{minipage}
-\MCFstructure
-\vspace{5mm}\\
-%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
-\MCFtitle{Change atom (brock address 2)}
-\begin{verbatim}
|| : reset brock adress
-?6,4\,|,?6,||,2:N
+?6,4\,|,?6,2:O,||,2:N
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change atom (absolute address)}
\begin{verbatim}
#2:N : change A#2 C to N
@@ -428,9 +407,9 @@ Insert hetero atom
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change atom (relative address)}
\begin{verbatim}
-2:N : change A(-2) C to N
@@ -441,9 +420,9 @@ Insert hetero atom
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Fuse ring (attached 1 bond)}
\begin{verbatim}
?6,3=?5 : fuse ?5 at B3
@@ -454,9 +433,9 @@ Insert hetero atom
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Fuse multi ring (attached 1 bond)}
\begin{verbatim}
@@ -466,9 +445,9 @@ Insert hetero atom
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Fuse ring (attached 2 bond)}
\begin{verbatim}
(4,11)=?6[4] : fuse 4/6 ring to B11..B4
@@ -481,9 +460,9 @@ MCd(1,.6)( 1,0)(<30,?6,3=?6,(11,4)=?4[2])
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Fuse ring (attached 3,4 bond)}
\begin{verbatim}
(16,4)=?6[3] : fuse 3/6 ring to B16..B4
@@ -496,9 +475,9 @@ MCd(1,.68)(1, 0)(?6,$(3,10,15)?6,(21,4)=?6[2])
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Spiro ring}
\begin{verbatim}
4*,?5 : add ?5(5 membered ring) at A4
@@ -509,35 +488,37 @@ An* : jump to An
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Branch bond (1)}
\begin{verbatim}
-2\ : 2*,0 4*\ : 4*,0~wf
-6\* : 6*,0~zf 8\\ : 8*,0~dm
+2\ : 2*,0
+4*\ : 4*,0~wf
+6\* : 6*,0~zf
+8\\ : 8*,0~dm
MCf(<30,!8,2\,!,4*\,!,6\*,!,8\\,!)
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Branch bond (2)}
\begin{verbatim}
2\~dr : 2*,0~dr
4\`1.5 : 4*,0`1.5
-6\^15 : 6*,0^15
+6\^15 : 6*,0^15
MCf(<-30,!6,2\~dr,!,4\`1.5,!,6\^15,-60)
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Insert substituent(1)}
\begin{verbatim}
MCf(<30,
@@ -548,22 +529,24 @@ MCf(<30,
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Insert substituent(2)}
\begin{verbatim}
-/ : single // : double
-*/ : wedge forward /* : wedge dotted forward
+/ : single
+// : double
+*/ : wedge forward
+/* : wedge dotted forward
** : direct
MCf(<30,!,//O,!,/*H,!,*/H,!,/?3,!,**?3,!)
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Insert substituent(3)}
\begin{verbatim}
~,^,`,> : change type,angle,length,enviroment
@@ -572,26 +555,24 @@ MCf(<30,!,//O,!,/*H,!,*/H,!,/?3,!,**?3,!)
MCf(<30,``1,
!,/Me~zf`2^30,!,/Me~zf`2^30,
!2,*/Pr>lr,!2,*/Pr>rl,!)
-
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Add substituent(1)}
\begin{verbatim}
sw_numberA:=1; numberA_end:=12;
MCf(<30,!11,
2:/Me,3:/Et,6:/Pr,7:/iPr,
10:/tBu,11:/Ph^-30)
-
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Add substituent(2)}
\begin{verbatim}
~,^,` : change type,angle,length
@@ -602,9 +583,9 @@ MCf(<30,?6,
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Add substituent(3)}
\begin{verbatim}
~,^,`,> : change type,angle,length,
@@ -615,9 +596,9 @@ MCF(<30,!7`1,
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Chain strech direction environment (1)}
\begin{verbatim}
>hz : horizontal enviroment (default)
@@ -630,9 +611,9 @@ MCF(<30,!7`1,
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Chain strech direction environment (2)}
\begin{verbatim}
>lr : left-right enviroment
@@ -645,9 +626,9 @@ MCF(<30,!7`1,
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Chain strech direction environment (3)}
\begin{verbatim}
>45 : fixed angle enviroment
@@ -658,9 +639,9 @@ MCF(<30,!7`1,
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change atom and Substituent}
\begin{verbatim}
NH,SO,SOO : inset hetero atom and substituent
@@ -671,9 +652,9 @@ NH,SO,SOO : inset hetero atom and substituent
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change color}
\begin{verbatim}
@(5)green : change color of A5 green
@@ -690,9 +671,9 @@ $(3)red : change color of B3 red
{\includegraphics{mcf_man_soc-031.eps}}}}% for dvipdfmx
%%%%{\includegraphics[width=30mm]{mcf_man_soc-031.png}}}}% for pdfLaTeX
\advance\fontnum\@ne\relax\advance\tempnum\@ne\relax%
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Chain start multiple characters}
\begin{verbatim}
if chain start multi charactor string,
@@ -704,9 +685,9 @@ use !0 instead of !
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{User definition}
\begin{verbatim}
iBuOH : user defined substructure
@@ -717,9 +698,9 @@ iBuOH : user defined substructure
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Inline definition}
\begin{verbatim}
Insert user defined substructure
@@ -729,9 +710,9 @@ Insert user defined substructure
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Font size}
\begin{verbatim}
beginfont("EN:Caffeine")
@@ -744,220 +725,249 @@ Insert user defined substructure
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Max ratio bond/width length}
\begin{verbatim}
max_bond_width:=0.10;
MCd(1,1)( 0, .5)(<30,Ph)
- max_bond_width:=0.15; %<<== : default
+ max_bond_width:=0.15;
MCd(1,1)(.33,.5)(<30,Ph)
max_bond_width:=0.25;
MCd(1,1)( 1, .5)(<30,Ph)
+
+** default: max_bond_width=0.15
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Ratio thickness/bond length}
\begin{verbatim}
ratio_thickness_bond:= 0.005;
MCd(1,.6)(0, .5)(<30,Ph)
-ratio_thickness_bond:= 0.015; %<<==
+ratio_thickness_bond:= 0.015;
MCd(1,.6)(.5,.5)(<30,Ph)
ratio_thickness_bond:= 0.030;
MCd(1,.6)(1, .5)(<30,Ph)
+
+** default: ratio_thickness_bond=0.015
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Offset thickness of bond}
\begin{verbatim}
beginfont() offset_thickness#:=0pt#;
MCd(1,.3)(0, .5)(<30,Ph) endfont
-beginfont() offset_thickness#:=0.2pt#; %<<==
+beginfont() offset_thickness#:=0.2pt#;
MCd(1,.3)(.5,.5)(<30,Ph) endfont
beginfont() offset_thickness#:=0.5pt#;
MCd(1,.3)(1, .5)(<30,Ph) endfont
+
+** default: offset_thickness#=0.2pt#
\end{verbatim}
\end{minipage}
\MCFstru\MCFstru\MCFstructure%
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Ratio char/bond thickness}
\begin{verbatim}
ratio_char_bond:=1.0;
MCd(1,.6)(0, .5)(<30,?6,5:O,2:NH)
-ratio_char_bond:=1.5; %<<==
+ratio_char_bond:=1.5;
MCd(1,.6)(.5,.5)(<30,?6,5:O,2:NH)
ratio_char_bond:=2.0;
MCd(1,.6)(1, .5)(<30,?6,5:O,2:NH)
+
+** default: ratio_char_bond=1.5
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Ratio bondgap/bond length}
\begin{verbatim}
ratio_bondgap_bond:= 0.10;
MCd(1,.6)(0, .5)(<30,Ph)
-ratio_bondgap_bond:= 0.15; %<<==
+ratio_bondgap_bond:= 0.15;
MCd(1,.6)(.5,.5)(<30,Ph)
ratio_bondgap_bond:= 0.20;
MCd(1,.6)(1, .5)(<30,Ph)
+
+** default: ratio_bondgap_bond=0.15
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Offset of doublebond gap}
\begin{verbatim}
beginfont() offset_bond_gap#:=0.0pt#;
MCd(1,.3)(0, .5)(<30,Ph) endfont
-beginfont() offset_bond_gap#:=0.3pt#; %<<==
+beginfont() offset_bond_gap#:=0.3pt#;
MCd(1,.3)(.5,.5)(<30,Ph) endfont
beginfont() offset_bond_gap#:=1.0pt#;
MCd(1,.3)(1, .5)(<30,Ph) endfont
+
+** default: offset_bond_gap#=0.3pt#
\end{verbatim}
\end{minipage}
\MCFstru\MCFstru\MCFstructure%
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Ratio atom/bond length}
\begin{verbatim}
ratio_atom_bond:= 0.25;
MCd(1,.6)(0, .5)(<30,?6,@(2,5)O)
-ratio_atom_bond:= 0.36; %<<==
+ratio_atom_bond:= 0.36;
MCd(1,.6)(.5,.5)(<30,?6,@(2,5)O)
ratio_atom_bond:= 0.45;
MCd(1,.6)(1, .5)(<30,?6,@(2,5)O)
+
+** default: ratio_atom_bond=0.36
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Offset of atom width}
\begin{verbatim}
beginfont() offset_atom#:=0.0pt#;
MCd(1,.3)(0, .5)(<30,Ph,@(2,4,6)N) endfont
-beginfont() offset_atom#:=0.8pt#; %<<==
+beginfont() offset_atom#:=0.8pt#;
MCd(1,.3)(.5,.5)(<30,Ph,@(2,4,6)N) endfont
beginfont() offset_atom#:=2.0pt#;
MCd(1,.3)(1, .5)(<30,Ph,@(2,4,6)N) endfont
+
+** default: offset_atom#=0.8pt#
\end{verbatim}
\end{minipage}
\MCFstru\MCFstru\MCFstructure%
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Ratio wedge/bond length}
\begin{verbatim}
ratio_wedge_bond:=0.10;
MCd(1,.6)(0, .5)(<30,?6,5:*/Me)
-ratio_wedge_bond:=0.12; %<<==
+ratio_wedge_bond:=0.12;
MCd(1,.6)(.5,.5)(<30,?6,5:*/Me)
ratio_wedge_bond:=0.20;;
MCd(1,.6)(1, .5)(<30,?6,5:*/Me)
+
+** default: ratio_wedge_bond=0.12
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Offset of wedge width}
\begin{verbatim}
-beginfont("EN:Offset_wedge")
-offset_wedge#:=0.0pt#;
+beginfont() offset_wedge#:=0.0pt#;
MCd(1,.3)(0, .5)(<30,?6,5:*/Me) endfont
-beginfont() offset_wedge#:=0.4pt#; %<<==
+beginfont() offset_wedge#:=0.4pt#;
MCd(1,.3)(.5,.5)(<30,?6,5:*/Me) endfont
beginfont() offset_wedge#:=1.0pt#;
MCd(1,.3)(1, .5)(<30,?6,5:*/Me) endfont
+
+** default: offset_wedge#=0.4pt#
\end{verbatim}
\end{minipage}
\MCFstru\MCFstru\MCFstructure%
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Ratio font atom gap/atom length}
\begin{verbatim}
ratio_atomgap_atom:=0.0;
MCd(1,.6)(0, .5)(<30,?6,@(2,5)O)
-ratio_atomgap_atom:=0.050; %<<==
+ratio_atomgap_atom:=0.050;
MCd(1,.6)(.5,.5)(<30,?6,@(2,5)O)
ratio_atomgap_atom:=0.12;
MCd(1,.6)(1, .5)(<30,?6,@(2,5)O)
+
+** default: ratio_atomgap_atom=0.050
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Ratio chain/ring length}
\begin{verbatim}
ratio_chain_ring:= 0.4;
MCd(1,.6)(0, .5)(<30,?6,5:/Et)
-ratio_chain_ring:= 0.66; %<<==
+ratio_chain_ring:= 0.66;
MCd(1,.6)(.5,.5)(<30,?6,5:/Et)
ratio_chain_ring:= 1.0;
MCd(1,.6)(1, .5)(<30,?6,5:/Et)
+
+** default: ratio_chain_ring=0.66
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Ratio zebra gap/bond length}
\begin{verbatim}
ratio_zebragap_bond:=0.06;
MCd(1,.6)(0, .5)(<30,Ph,5:/*Me`1)
-ratio_zebragap_bond:=0.12; %<<==
+ratio_zebragap_bond:=0.12;
MCd(1,.6)(.5,.5)(<30,Ph,5:/*Me`1)
ratio_zebragap_bond:=0.20;
MCd(1,.6)(1, .5)(<30,Ph,5:/*Me`1)
+
+** default: ratio_zebragap_bond=0.12
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Margin left and right}
\begin{verbatim}
margin_left_right:=0mm;
MCd(1,1)(0.5,0.9)(<30,CH3,!0,!17,CH3)
-margin_left_right:=0.4mm; %<<==
+margin_left_right:=0.4mm;
MCd(1,1)(0.5,0.5)(<30,CH3,!0,!17,CH3)
margin_left_right:=5mm;
MCd(1,1)(0.5,0.1)(<30,CH3,!0,!17,CH3)
+
+** default: margin_left_right=0.4mm
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Margin top and bottom}
\begin{verbatim}
margin_top_bottom:=0mm;
MCd(1,1)(0.1,0.5)(<30,Ph,2:/OH,5:/NH2)
-margin_top_bottom:=0.4mm; %<<==
+margin_top_bottom:=0.4mm;
MCd(1,1)(0.5,0.5)(<30,Ph,2:/OH,5:/NH2)
margin_top_bottom:=5mm;
MCd(1,1)(0.9,0.5)(<30,Ph,2:/OH,5:/NH2)
+
+** default: margin_top_bottom=0.4mm
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Switch numbering atom}
\begin{verbatim}
numberA_start:=3; numberA_end:=8;
@@ -970,9 +980,9 @@ MCd(1,1)(0.9,0.5)(<30,Ph,2:/OH,5:/NH2)
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Switch numbering bond}
\begin{verbatim}
numberB_start:=3; numberB_end:=8;
@@ -985,147 +995,146 @@ MCd(1,1)(0.9,0.5)(<30,Ph,2:/OH,5:/NH2)
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Switch substituent off}
\begin{verbatim}
+ MCd(1,.5)( 0,0.5)(<30,Ph,4:/Cl,3:/F)
- MCd(1,.6)( 0,0.5)(<30,Ph,4:/Cl,3:/F)
sw_subst_off:=1;
- MCd(1,.6)( 1,0.5)(<30,Ph,4:/Cl,3:/F)
+ MCd(1,.5)( 1,0.5)(<30,Ph,4:/Cl,3:/F)
** default: sw_subst_off=0
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Switch all bond single}
\begin{verbatim}
+ MCd(1,.5)( 0,0.5)(<30,Ph,4:/Cl,3:/F)
- MCd(1,.6)( 0,0.5)(<30,Ph,4:/Cl,3:/F)
sw_bond_single:=1;
- MCd(1,.6)( 1,0.5)(<30,Ph,4:/Cl,3:/F)
+ MCd(1,.5)( 1,0.5)(<30,Ph,4:/Cl,3:/F)
** default: sw_bond_single=0
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Switch start vector}
\begin{verbatim}
sw_start_vector:=1;
-
MCf(<30,Ph,4:/Cl,3:/F)
** default: sw_start_vector=0
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Switch font frame}
\begin{verbatim}
sw_font_frame:=1;
-
MCf(<30,Ph,4:/Cl,3:/F)
** default: sw_font_frame=0
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Switch molecular frame}
\begin{verbatim}
+ MCd(1,.5)(0,0.5)(<30,Ph,4:/Cl,3:/F)
- MCd(1,.6)(0,0.5)(<30,Ph,4:/Cl,3:/F)
sw_mol_frame:=1;
- MCd(1,.6)(1,0.5)(<30,Ph,4:/Cl,3:/F)
+ MCd(1,.5)(1,0.5)(<30,Ph,4:/Cl,3:/F)
** default: sw_mol_frame=0
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Switch atom frame}
\begin{verbatim}
sw_atom_frame:=1;
-
MCf(<30,Ph,4:/COOH,3:/OH)
** default: sw_atom_frame=0
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Switch solid mode}
\begin{verbatim}
-
MCd(1,.8)( 0,0.5)(<30,Ph,4:/Cl,3:/F)
- sw_solid:=1; ratio_bond_width:=0.08;
+
+ sw_solid:=1;
+ ratio_bond_width:=0.08;
MCd(1,.8)( 1,0.5)(<30,Ph,4:/Cl,3:/F)
** default: sw_solid=0
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Switch Expand}
\begin{verbatim}
+ MCd(1,.5)(0,0.5)(<30,Ph,4:/COOH,3:/NH2)
- MCd(1,.6)(0,0.5)(<30,Ph,4:/COOH,3:/NH2)
sw_expand:=1;
- MCd(1,.6)(1,0.5)(<30,Ph,4:/COOH,3:/NH2)
+ MCd(1,.5)(1,0.5)(<30,Ph,4:/COOH,3:/NH2)
** default: sw_expand=0
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Function MCd (draw)}
\begin{verbatim}
MCd(a,b)(c,d)(...)
a: ratio molecular width/font width
b: ratio molecular hight/font hight
- c: x axis position d:y axis position
+ c: x axis position
+ d: y axis position
MCd(1,0.8)(0.2,0.9)(<30,Ph,2:/OH,5:/NH2)
MCd(1,0.8)(0.8,0.1)(<30,Ph,2:/OH,5:/NH2)
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Function MCf (fit draw)}
\begin{verbatim}
MCf(...) : MCd(1,1)(0.5,0.5)(...)
- sw_font_frame:=1; sw_mol_frame:=1;
-
+ sw_font_frame:=1;
+ sw_mol_frame:=1;
MCf(<30,Ph,2:/OH,5:/NH2)
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Local setting}
\begin{verbatim}
beginfont()
@@ -1137,9 +1146,9 @@ beginfont() MCd(1,.4)( 1,.5)(Ph) endfont
\end{verbatim}
\end{minipage}
\MCFstru\MCFstru\MCFstructure%
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Global setting}
\begin{verbatim}
sw_mol_frame:=1; % <<== Global setting
@@ -1149,9 +1158,9 @@ beginfont() MCd(1,.4)( 1,.5)(Ph) endfont
\end{verbatim}
\end{minipage}
\MCFstru\MCFstru\MCFstructure%
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Output molecular information}
\begin{verbatim}
var3:="calc_weight"; tag3:="cMW";
@@ -1159,18 +1168,19 @@ var4:="calc_formula"; tag4:="cFM";
%% Output to mcf_man_soc-info.aux %%
F:mcf_man_soc;C:85;cMW:194.19174;cFM:C8H10N4O2
-MWc:calculated molecular weight
-FMc:calculated molecular formula
+cMW:calculated molecular weight
+cFM:calculated molecular formula
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Output additional information}
\begin{verbatim}
beginfont("EN:Tocopherol","CAS:59-02-9")
MCf(...) endfont
+
%% Output to mcf_man_soc-info.aux %%
F:mcf_man_soc;C:86;EN:Tocopherol;CAS:59-02-9
@@ -1179,14 +1189,15 @@ CAS:CAS number *:default output
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Change aux information delimiter}
\begin{verbatim}
aux_delimiter:="/";
beginfont("EN:Warfarin","CAS:81-81-2")
MCf(...) endfont
+
%% Output to mcf_man_soc-info.aux %%
F:mcf_man_soc/C:87/EN:Warfarin/CAS:81-81-2
@@ -1195,24 +1206,25 @@ F:mcf_man_soc/C:87/EN:Warfarin/CAS:81-81-2
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Fixed aux information}
\begin{verbatim}
tag3:="NO"; var3:="inf_NO";
tag4:="EN"; var4:="inf_EN";
sw_auxfix:=1; auxtag_out;
beginfont("EN:Ampicillin","NO:1") ... endfont
+
%% Output to mcf_man_soc-info.aux %%
F;C;NO;EN
mcf_man_soc;88;1;Ampicillin
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Example(1) Cholesterol}
\begin{verbatim}
@@ -1223,9 +1235,9 @@ mcf_man_soc;88;1;Ampicillin
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Example(2) Colchicine}
\begin{verbatim}
<30,Ph,@(1,2,6)/OMe,|,-4=?7,
@@ -1234,9 +1246,9 @@ mcf_man_soc;88;1;Ampicillin
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Example(3) Lycorine}
\begin{verbatim}
@@ -1246,9 +1258,9 @@ mcf_man_soc;88;1;Ampicillin
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
+\begin{minipage}[t][\htman]{90mm}
\MCFtitle{Example(4) Gibberellin}
\begin{verbatim}
<12,?6`1.3,3=?5,9=?7,12\^160`1.6,&8,
@@ -1259,21 +1271,10 @@ mcf_man_soc;88;1;Ampicillin
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
-%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
-\MCFtitle{Example(5) Capsaicin}
-\begin{verbatim}
- <30,Ph,
- 1:/OH,6:/OMe,4\,!,NH,!,//O,
- |,!8,-3=dr,-1:/Me
-\end{verbatim}
-\end{minipage}
-\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
-\MCFtitle{Example(6) Quinine}
+\begin{minipage}[t][\htman]{90mm}
+\MCFtitle{Example(5) Quinine}
\begin{verbatim}
<30,Ph,3=Ph,7:N,6:/OMe,
10\,*/OH,/H~zf^-60,!,
@@ -1283,10 +1284,10 @@ mcf_man_soc;88;1;Ampicillin
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
-\MCFtitle{Example(7) Atoropin}
+\begin{minipage}[t][\htman]{90mm}
+\MCFtitle{Example(6) Atoropin}
\begin{verbatim}
<-30,O,!,//O,!,!,Ph,
#1\~zb^-120,
@@ -1295,10 +1296,10 @@ mcf_man_soc;88;1;Ampicillin
\end{verbatim}
\end{minipage}
\MCFstructure
-\vspace{5mm}\\
+\vspace{\gpman}\\
%-----------------------------------------------------------------------------
-\begin{minipage}[t][37mm]{90mm}
-\MCFtitle{Example(8) Paclitaxel}
+\begin{minipage}[t][\htman]{90mm}
+\MCFtitle{Example(7) Paclitaxel}
\begin{verbatim}
?6,5=d,3*,{,``1,36,45,45,45,45,},&#5,
-4=?6,-4=?4,-1=wb,-3=wf,-1:O,||,
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf
index 40b550b849d..b3efc121b06 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf
Binary files differ
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex
index 0c47c8960c1..78ecaeecb20 100644
--- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex
+++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex
@@ -206,5 +206,3 @@ endfont;
\MOLcaption{110mm}{70mm}\\%
%----------------------------------------------------------------------------
\end{document}
-ment}
-ment}