diff options
author | Karl Berry <karl@freefriends.org> | 2015-07-30 21:59:50 +0000 |
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committer | Karl Berry <karl@freefriends.org> | 2015-07-30 21:59:50 +0000 |
commit | b6f4cf0741ace7ba3bc432bead24db36b84985af (patch) | |
tree | 61116ed575f3bae2ab0891b5e9ebd69c33eb7be8 /Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex | |
parent | 6dc0ccac671319a03fa217782f7cbd746556c426 (diff) |
mcf2graph (30jul15)
git-svn-id: svn://tug.org/texlive/trunk@38004 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex')
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex | 130 |
1 files changed, 101 insertions, 29 deletions
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex index 04aa16a1dc5..e1cd21a844e 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex @@ -1,9 +1,10 @@ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Molecular Coding Format manual by Akira Yamaji 2015.7 +% Molecular Coding Format manual by Akira Yamaji 2015.7.25 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \documentclass[a4paper]{article} \usepackage[dvipdfmx]{graphicx} -%%%%%\usepackage[pdftex]{graphicx} +%%%%\usepackage[pdftex]{graphicx} +%%%%\usepackage{epstopdf} \pagestyle{empty} \topmargin=-17mm \textheight=27.5cm @@ -27,19 +28,11 @@ \advance\fontnum\@ne\relax\advance\tempnum\@ne\relax% }% %---------------------------------------------------------------------------- -%%%\def\MCFstructure{% -%%% \makebox(75,0)[t]% -%%% {\frame{\makebox(70,35){% -%%% \ifnum\fontnum<10\includegraphics{mcf_man_soc-00\the\fontnum}% -%%% \else\ifnum\fontnum<100\includegraphics{mcf_man_soc-0\the\fontnum}\fi\fi}}}% -%%% \advance\fontnum\@ne\relax\advance\tempnum\@ne\relax% -%%%}% -%---------------------------------------------------------------------------- \begin{document} \noindent% \begin{picture}(180,0) - \put(45,12){{\LARGE Molecular Coding Format manual}\hspace{10mm} - by Akira Yamaji 2015.7} + \put(35,12){{\LARGE Molecular Coding Format manual}\hspace{10mm} + by Akira Yamaji 2015.7.25} \end{picture}\vspace{-6mm}\\ %---------------------------------------------------------------------------- \begin{minipage}[t][38mm]{100mm} @@ -113,9 +106,9 @@ six membered ring \MCFtitle{Change bond (2)} \begin{verbatim} Bn=bond : change bond - dm:double,dl:double(left),dr:double(right), - wf:wedge forward,wb:wedge backward, - zf:wedge dotted,zb:wedge dotted backward + vf:vector forward, vb:vector backward, + tm:triple, wv:waved, bd:broad single, + ov:over line ^^30,!9,1=vf,2=vb,3=tm,4=dt,5=wv, @(7~bd^-45`2,9~ov^45`2)/Me @@ -129,7 +122,7 @@ six membered ring \begin{verbatim} B`length : change bond length of B - ^^30,!3,!`1.2,!2 + ^^30,!2,!2`1.2,! \end{verbatim} \end{minipage} \MCFstructure @@ -140,7 +133,18 @@ B`length : change bond length of B \begin{verbatim} ``length : change all bond length after - ^^30,!3,``1.2,!3 + ^^30,!2,``1.2,!2,! +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change chain length (3)} +\begin{verbatim} +?n`length : change ring length + + ^^30,?6,3\,?6`1.2,4=??6 \end{verbatim} \end{minipage} \MCFstructure @@ -217,6 +221,18 @@ Insert hetero atom \begin{minipage}[t][38mm]{100mm} \MCFtitle{Fused ring (1)} \begin{verbatim} +?6,3=?6 : fuse ?6 at B3 + + ?6,3=?6 + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Fused ring (2)} +\begin{verbatim} ?6,$(3,3,3)??6 NG ?6,$(3,9,14)??6 OK @@ -229,7 +245,7 @@ Insert hetero atom \vspace{6mm}\\ %----------------------------------------------------------------------------- \begin{minipage}[t][38mm]{100mm} -\MCFtitle{Fused ring (2)} +\MCFtitle{Fused ring (3)} \begin{verbatim} ?6,$(3,3,3)?6 OK @@ -243,7 +259,7 @@ Insert hetero atom \vspace{6mm}\\ %----------------------------------------------------------------------------- \begin{minipage}[t][38mm]{100mm} -\MCFtitle{Fused ring (3)} +\MCFtitle{Fused ring (4)} \begin{verbatim} (4,11)=??6[4] : fuse 4/6 ring to B4 ..B11 (16,17)=??6[3] : fuse 3/6 ring to B16..B17 @@ -258,7 +274,7 @@ Insert hetero atom \vspace{6mm}\\ %----------------------------------------------------------------------------- \begin{minipage}[t][38mm]{100mm} -\MCFtitle{Fused ring (4)} +\MCFtitle{Fused ring (5)} \begin{verbatim} (20,5)=??5[3] : fuse 3/5 ring to B20..B5 (16,17)=??5[2] : fuse 2/5 ring to B16..B17 @@ -436,7 +452,7 @@ $(3)red : change color of B3 red \end{minipage} %%%%\MCFstructure % for Metafont \makebox(75,0)[t]{\frame{\makebox(70,35)% -{\includegraphics{mcf_man_soc-030.eps}}}}% for dvipdfmx +{\includegraphics{mcf_man_soc-032.eps}}}}% for dvipdfmx %%%%{\includegraphics[width=30mm]{mcf_man_soc-030.png}}}}% for pdfLaTeX \advance\fontnum\@ne\relax\advance\tempnum\@ne\relax% \vspace{6mm}\\ @@ -553,10 +569,12 @@ Insert user defined substructure \begin{minipage}[t][38mm]{100mm} \MCFtitle{Example(1) Ampicillin} \begin{verbatim} - ^^45,?4,2:N,2=??5,-1:S, - @(3^45,4^-45)/*H,1://O^15, - 5:/*COOH^-18,@(6^35,6^-35)/Me, - 4\^75,NH,!,//O,!,NH,!,Ph + + ^^45, + ?4,2:N,2=??5,-1:S, + @(3^45,4^-45)/*H,1://O^15, + 5:/*COOH^-18,@(6^35,6^-35)/Me, + 4\^75,NH,!,//O,!,NH,!,Ph \end{verbatim} \end{minipage} \MCFstructure @@ -565,10 +583,64 @@ Insert user defined substructure \begin{minipage}[t][38mm]{100mm} \MCFtitle{Example(2) Cholesterol} \begin{verbatim} - ^^30,?6,$(-4,-2)??6,-4=??5,7=dl, - 1:*/OH,@(4,12)*/Me^60,9:*/H^60, - 10:/*H^180,@(11,-1)/*H^-60, - -1\^17,/*Me,!4,/Me,!, + + ^^30, + ?6,$(-4,-2)??6,-4=??5,7=dl, + 1:*/OH,@(4,12)*/Me^60,9:*/H^60, + 10:/*H^180,@(11,-1)/*H^-60, + -1\^17,/*Me,!4,/Me,!, +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Example(3) alfa-Tocopherol} +\begin{verbatim} + + ^^30, + Ph,3=??6, + 7:O,@(1,2,5)/Me,8:/*Me^60,6:/OH, + 8\,!12,@(4,8)/*Me,12:/Me +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Example(4) Caffeine} +\begin{verbatim} + + ^^30, + ?6,-4=??5,$(3,8)dl,@(2,6,7,9)N, + @(2,6,9)/Me,@(1,5)//O +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Example(5) Lycorine} +\begin{verbatim} + + ^^30, + Ph,-4=??6,-2=??6,6=??5,(9,12)=??5[3], + 13=dl,8:N,@(15,17)O, + 9:/*H^180,10:*/H^60,13:*/OH,14:/*OH +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Example(6) Gibberellin} +\begin{verbatim} + + ^^12, + ?6`1.3,3=??5,9=??7,12\^160`1.6,&8, + 4\^155~zf`-1.2,O,55,//O^180`1,&2~zb, + 3=dr,11=wf,13=wb,7:/COOH,11://Me,1:*/OH, + 12:/*OH,2:*/Me,@(3^-60,9^60)*/H \end{verbatim} \end{minipage} \MCFstructure |