texshade 1.15 update

git-svn-id: svn://tug.org/texlive/trunk@1729 c570f23f-e606-0410-a88d-b1316a301751

4 files changed, 18 insertions, 24 deletions

diff --git a/Master/texmf-dist/doc/latex/texshade/AQP2spec.ALN b/Master/texmf-dist/doc/latex/texshade/AQP2spec.ALN
index 2c36822f0f8..8edd9e0ceff 100644
--- a/Master/texmf-dist/doc/latex/texshade/AQP2spec.ALN
+++ b/Master/texmf-dist/doc/latex/texshade/AQP2spec.ALN
@@ -1,10 +1,4 @@
 
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%%%%%                                                                      %%%%%
-%%%%% This is a minimal .ALN file--many sequence aligners can produce them %%%%%
-%%%%%                                                                      %%%%%
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-
 AQP2bt  SIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPSVLQIAMAFGLAIGTLVQALGHVSGA
 AQP2cf  SVAFSRAVFAEFLATLLFVFFGLGSALNWPQALPSVLQIAMAFGLGIGTLVQALGHVSGA
 AQP2dd  SIAFSRAVFSEFLATLLFVFFGLGSALNWPQALPSVLQIAMAFGLAIGTLVQALGHISGA
diff --git a/Master/texmf-dist/doc/latex/texshade/AQPpro.MSF b/Master/texmf-dist/doc/latex/texshade/AQPpro.MSF
index 815bb157d66..aef0f2b0e06 100644
--- a/Master/texmf-dist/doc/latex/texshade/AQPpro.MSF
+++ b/Master/texmf-dist/doc/latex/texshade/AQPpro.MSF
@@ -28,23 +28,23 @@ AQP4.PRO  YITAQCLGAIIGAGILYLV..........TPPSVVGGLGVTTVHGNLTAGH.....GLLV
 AQP5.PRO  YVAAQLVGAIAGAGILYWL..........APLNARGNLAVNALNNNTTPGK.....AMVV
 
           181                                                      240
-AQP1.PRO  EIIGTLQLVLCVLATTDR.RRRDLGGSAPLAIGLSV.ALGHLLAIDYTGCGINPARSFGS
-AQP2.PRO  ELFLTMQLVLCIFASTDE.RRGDNLGSPALSIGFSV.TLGHLLGIYFTGCSMNPARSLAP
-AQP3.PRO  QFIGTAALIVCVLAIVDPYNNPVPRGLEAFTVGLVVLVIGTSMGFN.SGYAVNPARDFGP
-AQP4.PRO  ELIITFQLVFTIFASCDS.KRTDVTGSVALAIGFSV.AIGHLFAINYTGASMNPARSFGP
-AQP5.PRO  ELILTFQLALCIFSSTDS.RRTSPVGSPALSIGLSV.TLGHLVGIYFTGCSMNPARSFGP
+AQP1.PRO  EIIGTLQLVLCVLATTDR.RRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSA
+AQP2.PRO  ELFLTMQLVLCIFASTDE.RRGDNLGSPALSIGFSVTLGHLLGIYFTGCSMNPARSLAPA
+AQP3.PRO  QFIGTAALIVCVLAIVDPYNNPVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFGPR
+AQP4.PRO  ELIITFQLVFTIFASCDS.KRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPA
+AQP5.PRO  ELILTFQLALCIFSSTDS.RRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPA
 
           241                                                      300
-AQP1.PRO  AVLTR..NFS.N......HWIFWVGPFIGSALAVL..IYDFILAPRSSDFTDRMK.....
-AQP2.PRO  AVVTG..KFD.D......HWVFWIGPLVGAIIGSL..LYNYLLFPSAKSLQERL..AVLK
-AQP3.PRO  RLFTALAGWGSEVFTTGQNW..WWVPIVSPLLGSIGGVFVYQL.................
-AQP4.PRO  AVIMG..NWE.N......HWIYWVGPIIGAVLAGA..LYEYV.FCPDVELKRRLKEAFSK
-AQP5.PRO  AVVMN..RFSPS......HWVFWVGPIVGAMLAAI..LYFYLLFPSSLSLHDRV..AVVK
+AQP1.PRO  VLTR..NFS.N......HWIFWVGPFIGSALAVL..IYDFILAPRSSDFTDRMK......
+AQP2.PRO  VVTG..KFD.D......HWVFWIGPLVGAIIGSL..LYNYLLFPSAKSLQERL..AVLKG
+AQP3.PRO  LFTALAGWGSEVFTTGQNW..WWVPIVSPLLGSIGGVFVYQL..................
+AQP4.PRO  VIMG..NWE.N......HWIYWVGPIIGAVLAGA..LYEYV.FCPDVELKRRLKEAFSKA
+AQP5.PRO  VVMN..RFSPS......HWVFWVGPIVGAMLAAI..LYFYLLFPSSLSLHDRV..AVVKG
 
-          301                                                         356
-AQP1.PRO  .......VWTS.....GQVEEYDLDAD.......DINSRVEMKPK...........
-AQP2.PRO  G.LEPDTDWEEREVRRRQ..SVELHSPQSLPRG...................SKA.
-AQP3.PRO  ..................MIGCHLEQPPPSTEAENV.KLAHMKHKE.......QI.
-AQP4.PRO  AAQQTKGSYMEVEDNRSQVETEDLILKPGVVHVIDIDRGDEKKGKDSSGEVLSSV.
-AQP5.PRO  GTYEPEEDWEDHREERKK..TIELTAH.............................
+          301                                                      354
+AQP1.PRO  ......VWTS.....GQVEEYDLDAD.......DINSRVEMKPK..........
+AQP2.PRO  .LEPDTDWEEREVRRRQ..SVELHSPQSLPRG...................SKA
+AQP3.PRO  .................MIGCHLEQPPPSTEAENV.KLAHMKHKE.......QI
+AQP4.PRO  AQQTKGSYMEVEDNRSQVETEDLILKPGVVHVIDIDRGDEKKGKDSSGEVLSSV
+AQP5.PRO  TYEPEEDWEDHREERKK..TIELTAH............................
 
diff --git a/Master/texmf-dist/doc/latex/texshade/README b/Master/texmf-dist/doc/latex/texshade/README
index 752a63a8538..0fca2e6ccd3 100644
--- a/Master/texmf-dist/doc/latex/texshade/README
+++ b/Master/texmf-dist/doc/latex/texshade/README
@@ -1,4 +1,4 @@
-    TeXshade v1.12
+    TeXshade v1.15
     >>
     >> A LaTeX package for setting nucleotide and peptide alignments.
     >>
@@ -26,7 +26,7 @@
     >> ding modes.  TeXshade  combines  highest  flexibility  and the
     >> habitual TeX output quality--with reasonable time expenditure.
     >>
-    Copyright (C)  1999 - 2005  Eric Beitz
+    Copyright (C)  1999 - 2006  Eric Beitz
 
 
 
diff --git a/Master/texmf-dist/doc/latex/texshade/texshade.pdf b/Master/texmf-dist/doc/latex/texshade/texshade.pdf
index d4a4bcd4d81..3ac7cb76492 100644
--- a/Master/texmf-dist/doc/latex/texshade/texshade.pdf
+++ b/Master/texmf-dist/doc/latex/texshade/texshade.pdf