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author | Karl Berry <karl@freefriends.org> | 2014-02-27 00:01:50 +0000 |
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committer | Karl Berry <karl@freefriends.org> | 2014-02-27 00:01:50 +0000 |
commit | 90ae413a94da014dbf7a6a8ab584f7c668483a5a (patch) | |
tree | 4e0528a2b2fb2004988e7fc804ea2f1354f1f5d5 /Master/texmf-dist/doc/generic/pgf/text-en/pgfmanual-en-gd-phylogenetics.tex | |
parent | 800cc56380d1edfe567a6a66bef13e8950eb2b0c (diff) |
pgf 3.0.0
git-svn-id: svn://tug.org/texlive/trunk@33057 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Master/texmf-dist/doc/generic/pgf/text-en/pgfmanual-en-gd-phylogenetics.tex')
-rw-r--r-- | Master/texmf-dist/doc/generic/pgf/text-en/pgfmanual-en-gd-phylogenetics.tex | 82 |
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diff --git a/Master/texmf-dist/doc/generic/pgf/text-en/pgfmanual-en-gd-phylogenetics.tex b/Master/texmf-dist/doc/generic/pgf/text-en/pgfmanual-en-gd-phylogenetics.tex new file mode 100644 index 00000000000..28906ec17b5 --- /dev/null +++ b/Master/texmf-dist/doc/generic/pgf/text-en/pgfmanual-en-gd-phylogenetics.tex @@ -0,0 +1,82 @@ +% Copyright 2013 by Sarah Mäusle and Till Tantau +% +% This file may be distributed and/or modified +% +% 1. under the LaTeX Project Public License and/or +% 2. under the GNU Free Documentation License. +% +% See the file doc/generic/pgf/licenses/LICENSE for more details. + + +\section{Graph Drawing Layouts: Phylogenetic Trees} +\label{section-library-graphdrawing-phylogenetics} + +{\noindent {\emph{by Sarah M\"ausle and Till Tantau}}} + +\ifluatex\else This section of the manual can only be typeset using Lua\TeX.\expandafter\endinput\fi + +\tikzset{/graph drawing/phylogenetic inner node/.style={ + /tikz/.cd, + draw, circle, inner sep=0pt, minimum size=5pt} +} +\tikzset{/graph drawing/phylogenetic edge/.style={ + /tikz/.cd, + thick, rounded corners,edge node={node[auto,font=\tiny, inner sep=2pt]{}}} +} + + +\includeluadocumentationof{pgf.gd.phylogenetics.library} +\includeluadocumentationof{pgf.gd.phylogenetics.PhylogeneticTree} + + +\subsection{Generating a Phylogenetic Tree} + +... + +When a phylogenetic tree is generated, new nodes and edges get +created. In order to give you a chance at styling them, the following +styles are executed: + +\begin{stylekey}{/graph drawing/phylogenetic inner node} + The style is added every newly created inner node. In this manual, + this key is set to: +\begin{codeexample}[code only] +\pgfgdset{phylogenetic inner node/.style={ + /tikz/.cd, draw, circle, inner sep=0pt, minimum size=5pt + } +} +\end{codeexample} +\end{stylekey} + +\begin{stylekey}{/graph drawing/phylogenetic edge=\meta{length}} + The style is added every newly created phylogenetic edge. The + \meta{length} will be set to the computed evolutionary length of the + edge. In this manual, this key is set to: +\begin{codeexample}[code only] +\pgfgdset{phylogenetic edge/.style={ + /tikz/.cd, thick, rounded corners + } +} +\end{codeexample} +\end{stylekey} + + +\includeluadocumentationof{pgf.gd.phylogenetics.AuthorDefinedPhylogeny} +\includeluadocumentationof{pgf.gd.phylogenetics.SokalMichener1958} +\includeluadocumentationof{pgf.gd.phylogenetics.BalancedMinimumEvolution} +\includeluadocumentationof{pgf.gd.phylogenetics.BalancedNearestNeighbourInterchange} + + +\subsection{Laying out the Phylogram} + +\includeluadocumentationof{pgf.gd.phylogenetics.Maeusle2012} + + + +\endinput + + +%%% Local Variables: +%%% mode: latex +%%% TeX-master: "pgfmanual-pdftex-version" +%%% End: |