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authorKarl Berry <karl@freefriends.org>2021-10-03 20:32:45 +0000
committerKarl Berry <karl@freefriends.org>2021-10-03 20:32:45 +0000
commit9d67bfdcf1353cbb0d96f6eb0e10b469ab0020b9 (patch)
tree92ec4ccf6c4679ace2bc8c91a8c0e6308655ab40 /Build/source
parent01ff03dce6921c6e40b65ec78befdf9124b1709d (diff)
crossrefware (3oct21)
git-svn-id: svn://tug.org/texlive/trunk@60689 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Build/source')
-rwxr-xr-xBuild/source/texk/texlive/linked_scripts/crossrefware/bbl2bib.pl4
-rwxr-xr-xBuild/source/texk/texlive/linked_scripts/crossrefware/bibdoiadd.pl4
-rwxr-xr-xBuild/source/texk/texlive/linked_scripts/crossrefware/bibmradd.pl4
-rwxr-xr-xBuild/source/texk/texlive/linked_scripts/crossrefware/biburl2doi.pl4
-rwxr-xr-xBuild/source/texk/texlive/linked_scripts/crossrefware/bibzbladd.pl4
-rwxr-xr-xBuild/source/texk/texlive/linked_scripts/crossrefware/ltx2crossrefxml.pl808
6 files changed, 626 insertions, 202 deletions
diff --git a/Build/source/texk/texlive/linked_scripts/crossrefware/bbl2bib.pl b/Build/source/texk/texlive/linked_scripts/crossrefware/bbl2bib.pl
index 397e52a6af8..2e3df9b6856 100755
--- a/Build/source/texk/texlive/linked_scripts/crossrefware/bbl2bib.pl
+++ b/Build/source/texk/texlive/linked_scripts/crossrefware/bbl2bib.pl
@@ -86,7 +86,7 @@ Boris Veytsman
=head1 COPYRIGHT AND LICENSE
-Copyright (C) 2014-2017 Boris Veytsman
+Copyright (C) 2014-2021 Boris Veytsman
This is free software. You may redistribute copies of it under the
terms of the GNU General Public License
@@ -98,7 +98,7 @@ extent permitted by law.
use strict;
BEGIN {
# find files relative to our installed location within TeX Live
- chomp(my $TLMaster = `kpsewhich -var-value=SELFAUTOPARENT`); # TL root
+ chomp(my $TLMaster = `kpsewhich -var-value=TEXMFROOT`); # TL root
if (length($TLMaster)) {
unshift @INC, "$TLMaster/texmf-dist/scripts/bibtexperllibs";
}
diff --git a/Build/source/texk/texlive/linked_scripts/crossrefware/bibdoiadd.pl b/Build/source/texk/texlive/linked_scripts/crossrefware/bibdoiadd.pl
index 219896bf404..bace84c0002 100755
--- a/Build/source/texk/texlive/linked_scripts/crossrefware/bibdoiadd.pl
+++ b/Build/source/texk/texlive/linked_scripts/crossrefware/bibdoiadd.pl
@@ -85,7 +85,7 @@ Boris Veytsman
=head1 COPYRIGHT AND LICENSE
-Copyright (C) 2014-2017 Boris Veytsman
+Copyright (C) 2014-2021 Boris Veytsman
This is free software. You may redistribute copies of it under the
terms of the GNU General Public License
@@ -97,7 +97,7 @@ extent permitted by law.
use strict;
BEGIN {
# find files relative to our installed location within TeX Live
- chomp(my $TLMaster = `kpsewhich -var-value=SELFAUTOPARENT`); # TL root
+ chomp(my $TLMaster = `kpsewhich -var-value=TEXMFROOT`); # TL root
if (length($TLMaster)) {
unshift @INC, "$TLMaster/texmf-dist/scripts/bibtexperllibs";
}
diff --git a/Build/source/texk/texlive/linked_scripts/crossrefware/bibmradd.pl b/Build/source/texk/texlive/linked_scripts/crossrefware/bibmradd.pl
index 10f36113f6a..5f6ae053d90 100755
--- a/Build/source/texk/texlive/linked_scripts/crossrefware/bibmradd.pl
+++ b/Build/source/texk/texlive/linked_scripts/crossrefware/bibmradd.pl
@@ -52,7 +52,7 @@ Boris Veytsman
=head1 COPYRIGHT AND LICENSE
-Copyright (C) 2014-2017 Boris Veytsman
+Copyright (C) 2014-2021 Boris Veytsman
This is free software. You may redistribute copies of it under the
terms of the GNU General Public License
@@ -64,7 +64,7 @@ extent permitted by law.
use strict;
BEGIN {
# find files relative to our installed location within TeX Live
- chomp(my $TLMaster = `kpsewhich -var-value=SELFAUTOPARENT`); # TL root
+ chomp(my $TLMaster = `kpsewhich -var-value=TEXMFROOT`); # TL root
if (length($TLMaster)) {
unshift @INC, "$TLMaster/texmf-dist/scripts/bibtexperllibs";
}
diff --git a/Build/source/texk/texlive/linked_scripts/crossrefware/biburl2doi.pl b/Build/source/texk/texlive/linked_scripts/crossrefware/biburl2doi.pl
index 76d1842bf92..33f7c674904 100755
--- a/Build/source/texk/texlive/linked_scripts/crossrefware/biburl2doi.pl
+++ b/Build/source/texk/texlive/linked_scripts/crossrefware/biburl2doi.pl
@@ -39,7 +39,7 @@ Boris Veytsman
=head1 COPYRIGHT AND LICENSE
-Copyright (C) 2017 Boris Veytsman
+Copyright (C) 2021 Boris Veytsman
This is free software. You may redistribute copies of it under the
terms of the GNU General Public License
@@ -51,7 +51,7 @@ extent permitted by law.
use strict;
BEGIN {
# find files relative to our installed location within TeX Live
- chomp(my $TLMaster = `kpsewhich -var-value=SELFAUTOPARENT`); # TL root
+ chomp(my $TLMaster = `kpsewhich -var-value=TEXMFROOT`); # TL root
if (length($TLMaster)) {
unshift @INC, "$TLMaster/texmf-dist/scripts/bibtexperllibs";
}
diff --git a/Build/source/texk/texlive/linked_scripts/crossrefware/bibzbladd.pl b/Build/source/texk/texlive/linked_scripts/crossrefware/bibzbladd.pl
index 7516862bafe..c05a1137f76 100755
--- a/Build/source/texk/texlive/linked_scripts/crossrefware/bibzbladd.pl
+++ b/Build/source/texk/texlive/linked_scripts/crossrefware/bibzbladd.pl
@@ -52,7 +52,7 @@ Boris Veytsman
=head1 COPYRIGHT AND LICENSE
-Copyright (C) 2014-2017 Boris Veytsman
+Copyright (C) 2014-2021 Boris Veytsman
This is free software. You may redistribute copies of it under the
terms of the GNU General Public License
@@ -64,7 +64,7 @@ extent permitted by law.
use strict;
BEGIN {
# find files relative to our installed location within TeX Live
- chomp(my $TLMaster = `kpsewhich -var-value=SELFAUTOPARENT`); # TL root
+ chomp(my $TLMaster = `kpsewhich -var-value=TEXMFROOT`); # TL root
if (length($TLMaster)) {
unshift @INC, "$TLMaster/texmf-dist/scripts/bibtexperllibs";
}
diff --git a/Build/source/texk/texlive/linked_scripts/crossrefware/ltx2crossrefxml.pl b/Build/source/texk/texlive/linked_scripts/crossrefware/ltx2crossrefxml.pl
index 105611a7dc9..02f841361c7 100755
--- a/Build/source/texk/texlive/linked_scripts/crossrefware/ltx2crossrefxml.pl
+++ b/Build/source/texk/texlive/linked_scripts/crossrefware/ltx2crossrefxml.pl
@@ -4,12 +4,12 @@
=head1 NAME
-ltx2crossrefxml.pl - a tool for creation of XML files for submitting to crossref.
+ltx2crossrefxml.pl - create XML files for submitting to crossref.org
=head1 SYNOPSIS
-ltx2crossrefxml [B<-c> I<config_file>] [B<-o> I<output>] I<latex_file> I<latex_file> ...
-
+ltx2crossrefxml [B<-c> I<config_file>] [B<-o> I<output_file>] [B<-input-is-xml>]
+ I<latex_file1> I<latex_file2> ...
=head1 OPTIONS
@@ -17,89 +17,326 @@ ltx2crossrefxml [B<-c> I<config_file>] [B<-o> I<output>] I<latex_file> I<latex_
=item B<-c> I<config_file>
-Configuration file. If this file is absent, some defaults are used.
+Configuration file. If this file is absent, defaults are used.
See below for its format.
-
-=item B<-o> I<output>
+=item B<-o> I<output_file>
Output file. If this option is not used, the XML is output to stdout.
+=item B<-rpi-is-xml>
+
+Do not transform author and title input strings, assume they are valid XML.
+
=back
-=head1 DESCRIPTION
+The usual C<--help> and C<--version> options are also supported. Options
+can begin with either C<-> or C<-->, and ordered arbitrarily.
-The script takes a number of latex files and produces an XML file
-ready for submission to Crossref. Each file must be previously processed
-by LaTeX with the newest C<resphilosophica> package: the package creates
-the file C<.rti> wtih the information about the bibliography.
+=head1 DESCRIPTION
-The processing of reference list is at present rather limited: only so
-called unstructured references are produced.
+For each given I<latex_file>, this script reads C<.rpi> and (if they
+exist) C<.bbl> files and outputs corresponding XML that can be uploaded
+to Crossref (L<https://crossref.org>). Any extension of I<latex_file> is
+ignored, and I<latex_file> itself is not read (and need not even exist).
+
+Each C<.rpi> file specifies the metadata for a single article to be
+uploaded to Crossref (a C<journal_article> element in their schema); an
+example is below. These files are output by the C<resphilosophica>
+package (L<https://ctan.org/pkg/resphilosophica>), but (as always) can
+also be created by hand or by whatever other method you implement.
+
+Any C<.bbl> files present are used for the citation information in the
+output XML. See the L<CITATIONS> section below.
+
+Unless C<--rpi-is-xml> is specified, for all text (authors, title,
+citations), standard TeX control sequences are replaced with plain text
+or UTF-8 or eliminated, as appropriate. The C<LaTeX::ToUnicode::convert>
+routine is used for this (L<https://ctan.org/pkg/bibtexperllibs>).
+Tricky TeX control sequences will almost surely not be handled
+correctly. If C<--rpi-is-xml> is given, the author and title strings
+from the rpi files are output as-is, assuming they are valid XML; no
+checking is done. Citation text from C<.bbl> files is always converted
+from LaTeX to plain text.
+
+This script just writes an XML file. It's up to you to actually do the
+uploading to Crossref; for example, you can use their Java tool
+C<crossref-upload-tool.jar>
+(L<https://www.crossref.org/education/member-setup/direct-deposit-xml/https-post>).
+For the definition of their schema, see
+L<https://data.crossref.org/reports/help/schema_doc/4.4.2/index.html>
+(this is the schema version currently followed by this script).
=head1 CONFIGURATION FILE FORMAT
-The configuration file is mostly self-explanatory: it has comments
-(starting with C<#>) and assginments in the form
-
- $field = value ;
+The configuration file is read as Perl code. Thus, comment lines
+starting with C<#> and blank lines are ignored. The other lines are
+typically assignments in the form (spaces are optional):
+
+ $variable = value ;
+
+Usually the value is a C<"string"> enclosed in ASCII double-quote or
+single-quote characters, per Perl syntax. The idea is to specify the
+user-specific and journal-specific values needed for the Crossref
+upload. The variables which are used are these:
+
+ $depositorName = "Depositor Name";
+ $depositorEmail = 'depositor@example.org';
+ $registrant = 'Registrant'; # organization name
+ $fullTitle = "FULL TITLE"; # journal name
+ $issn = "1234-5678"; # required
+ $abbrevTitle = "ABBR. TTL."; # optional
+ $coden = "CODEN"; # optional
+
+
+For a given run, all C<.rpi> data read is assumed to belong to the
+journal that is specified in the configuration file. More precisely, the
+configuration data is written as a C<journal_metadata> element, with
+given C<full_title>, C<issn>, etc., and then each C<.rpi> is written as
+C<journal_issue> plus C<journal_article> elements.
+
+The configuration file can also define one Perl function:
+C<LaTeX_ToUnicode_convert_hook>. If it is defined, it is called at the
+beginning of the procedure that converts LaTeX text to Unicode, which is
+done with the L<LaTeX::ToUnicode> module, from the C<bibtexperllibs>
+package (L<https://ctan.org/pkg/bibtexperllibs>). The function must
+accept one string (the LaTeX text), and return one string (presumably
+the transformed string). The standard conversions are then applied to
+the returned string, so the configured function need only handle special
+cases, such as control sequences particular to the journal at hand.
+
+=head1 RPI FILE FORMAT
+
+Here's the (relevant part of the) C<.rpi> file corresponding to the
+C<rpsample.tex> example in the C<resphilosophica> package
+(L<https://ctan.org/pkg/resphilosophica>):
+
+ %authors=Boris Veytsman\and A. U. Th{\o }r\and C. O. R\"espondent
+ %title=A Sample Paper:\\ \emph {A Template}
+ %year=2012
+ %volume=90
+ %issue=1--2
+ %startpage=1
+ %endpage=1
+ %doi=10.11612/resphil.A31245
+ %paperUrl=http://borisv.lk.net/paper12
+ %publicationType=full_text
+
+Other lines, some not beginning with %, are ignored (and not shown).
+For more details on processing, see the code.
+
+The C<%paperUrl> value is what will be associated with the given C<%doi>
+(output as the C<resource> element). Crossref strongly recommends that
+the url be for a so-called landing page, and not directly for a pdf
+(L<https://www.crossref.org/education/member-setup/creating-a-landing-page/>).
+Special case: if the url is not specified,
+and the journal is I<S<Res Philosophica>>,
+a special-purpose search url using L<pdcnet.org> is returned.
+Any other journal must always specify this.
+
+The C<%authors> field is split at C<\and> (ignoring whitespace before
+and after), and output as the C<contributors> element, using
+C<sequence="first"> for the first listed, C<sequence="additional"> for
+the remainder.
+
+If the C<%publicationType> is not specified, it defaults to
+C<full_text>, since that has historically been the case; C<full_text>
+can also be given explicitly. The other values allowed by the Crossref
+schema are C<abstract_only> and C<bibliographic_record>. Finally, if the
+value is C<omit>, the C<publication_type> attribute is omitted entirely
+from the given C<journal_article> element.
+
+Each C<.rpi> must contain information for only one article, but multiple
+files can be read in a single run. It would not be difficult to support
+multiple articles in a single C<.rpi> file, but it makes debugging and
+error correction easier when each uploaded XML contains a single
+article.
+
+=head2 MORE ABOUT AUTHOR NAMES
+
+The three formats for names recognized are (not coincidentally) the same
+as BibTeX:
+
+ First von Last
+ von Last, First
+ von Last, Jr., First
+
+The forms can be freely intermixed within a single C<%authors> line,
+separated with C<\and> (including the backslash). Commas as name
+separators are not supported, unlike BibTeX.
+
+In short, you may almost always use the first form; you shouldn't if
+either there's a Jr part, or the Last part has multiple tokens but
+there's no von part. See the C<btxdoc> (``BibTeXing'' by Oren Patashnik)
+document for details.
+
+In the C<%authors> line of a C<.rpi> file, some secondary directives are
+recognized, indicated by C<|> characters. Easiest to explain with an
+example:
+
+ %authors=|organization|\LaTeX\ Project Team \and Alex Brown|orcid=123
+
+Thus: 1) if C<|organization|> is specified, the author name will be output
+as an C<organization> contributor, instead of the usual C<person_name>,
+as the Crossref schema requires.
+
+2) If C<|orcid=I<value>|> is specified, the I<value> is output as an
+C<ORCID> element for that C<person_name>.
+
+These two directives, C<|organization>| and C<|orcid|> are mutually
+exclusive, because that's how the Crossref schema defines them. The C<=>
+sign after C<orcid> is required, while all spaces after the C<orcid>
+keyword are ignored. Other than that, the ORCID value is output
+literally. (E.g., the ORCID value of C<123> above is clearly invalid,
+but it would be output anyway, with no warning.)
+
+Extra C<|> characters, at the beginning or end of the entire C<%authors>
+string, or doubled in the middle, are accepted and ignored. Whitespace
+is ignored around all C<|> characters.
+
+=head1 CITATIONS
+
+Each C<.bbl> file corresponding to an input C<.rpi> file is read and
+used to output a C<citation_list> element for that C<journal_article> in
+the output XML. If no C<.bbl> file exists for a given C<.rpi>,
+no C<citation_list> is output for that article.
+
+The C<.bbl> processing is rudimentary: only so-called
+C<unstructured_citation> references are produced for Crossref, that is,
+the contents of the citation (each paragraph in the C<.bbl>) is dumped
+as a single flat string without markup.
+
+Bibliography text is unconditionally converted from TeX to XML, via the
+method described above. It is not unusual for the conversion to be
+incomplete or incorrect. It is up to you to check for this; e.g., if
+any backslashes remain in the output, it is most likely an error.
+
+Furthermore, it is assumed that the C<.bbl> file contains a sequence of
+references, each starting with C<\bibitem{I<KEY>}> (which itself must be
+at the beginning of a line, preceded only by whitespace), and the whole
+bibliography ending with C<\end{thebibliography}> (similarly at the
+beginning of a line). A bibliography not following this format will not
+produce useful results. Bibliographies can be created by hand, or with
+BibTeX, or any other method.
+
+The C<key> attribute for the C<citation> element is taken as the I<KEY>
+argument to the C<\bibitem> command. The sequential number of the
+citation (1, 2, ...) is appended. The argument to C<\bibitem> can be
+empty (C<\bibitem{}>, and the sequence number will be used on its own.
+Although TeX will not handle empty C<\bibitem> keys, it can be
+convenient when creating a C<.bbl> purely for Crossref.
+
+The C<.rpi> file is also checked for the bibliography information, in
+this same format.
+
+Feature request: if anyone is interested in figuring out how to generate
+structured citations
+(L<https://data.crossref.org/reports/help/schema_doc/4.4.2/schema_4_4_2.html#citation>)
+instead of these flat text dumps, that would be great.
=head1 EXAMPLES
- ltx2crossrefxml.pl ../paper1/paper1.tex ../paper2/paper2.tex -o result.xml
+ ltx2crossrefxml.pl ../paper1/paper1.tex ../paper2/paper2.tex \
+ -o result.xml
- ltx2crossrefxml.pl -c myconfig.cnf paper.tex -o paper.xml
+ ltx2crossrefxml.pl -c myconfig.cfg paper.tex -o paper.xml
=head1 AUTHOR
-Boris Veytsman
+Boris Veytsman L<https://github.com/borisveytsman/crossrefware>
=head1 COPYRIGHT AND LICENSE
-Copyright (C) 2012-2016 Boris Veytsman
+Copyright (C) 2012-2021 Boris Veytsman
This is free software. You may redistribute copies of it under the
terms of the GNU General Public License
-L<http://www.gnu.org/licenses/gpl.html>. There is NO WARRANTY, to the
+L<https://www.gnu.org/licenses/gpl.html>. There is NO WARRANTY, to the
extent permitted by law.
-
=cut
use strict;
+ use warnings;
+
+ use Cwd;
+ use File::Basename;
+ use File::Spec;
BEGIN {
# find files relative to our installed location within TeX Live
- chomp(my $TLMaster = `kpsewhich -var-value=SELFAUTOPARENT`); # TL root
+ chomp(my $TLMaster = `kpsewhich -var-value=TEXMFROOT`); # TL root
if (length($TLMaster)) {
unshift @INC, "$TLMaster/texmf-dist/scripts/bibtexperllibs";
}
+ # find development bibtexperllibs in sibling checkout to this script,
+ # even if $0 is a symlink. All irrelevant when using from an installation.
+ my $real0 = Cwd::abs_path($0);
+ my $scriptdir = File::Basename::dirname($real0);
+ my $dev_btxperllibs = Cwd::abs_path("$scriptdir/../bibtexperllibs");
+ # we need the lib/ subdirectories inside ...
+ unshift (@INC, glob ("$dev_btxperllibs/*/lib")) if -d $dev_btxperllibs;
}
+
use POSIX qw(strftime);
+
use BibTeX::Parser::Author;
- use LaTeX::ToUnicode qw (convert);
- use File::Basename;
- use File::Spec;
- my $USAGE="USAGE: $0 [-c config] [-o output] file1 file2 ...\n";
-my $VERSION = <<END;
-ltx2crossrefxml v2.2
-This is free software. You may redistribute copies of it under the
-terms of the GNU General Public License
-http://www.gnu.org/licenses/gpl.html. There is NO WARRANTY, to the
-extent permitted by law.
-$USAGE
+ use LaTeX::ToUnicode;
+
+ my $USAGE = <<END;
+Usage: $0 [-c CONFIG] [-o OUTPUT] [--rpi-is-xml] LTXFILE...
+
+Convert .rpi and (if any are present) .bbl files corresponding to each
+LTXFILE to xml, for submitting to crossref.org. The LTXFILE is not read
+(and need not even exist); any extension it has is replaced by .rpi and
+.bbl.
+
+The .rpi files are plain text, with values on lines beginning with %, as
+output by (for example) the resphilosophica LaTeX package. The .bbl
+files are as output by BibTeX. Both are also commonly created by hand.
+The documentation for this script has examples.
+
+The xml is written to standard output by default; the -o (--output)
+option overrides this.
+
+If the -c (--config) option is given, the given file is read before any
+processing is done. This is used to define journal-specific defaults.
+
+The usual --help and --version options are also supported.
+
+For an example of using this script and associatd code, see the TUGboat
+processing at
+https://github.com/TeXUsersGroup/tugboat/tree/trunk/capsules/crossref.
+
+Development sources, bug tracker: https://github.com/borisveytsman/crossrefware
+Releases: https://ctan.org/pkg/crossrefware
END
- use Getopt::Std;
+
+ my $VERSION = <<END;
+ltx2crossrefxml (crossrefware) 2.51
+This is free software: you are free to change and redistribute it, under
+the terms of the GNU General Public License
+http://www.gnu.org/licenses/gpl.html (any version).
+There is NO WARRANTY, to the extent permitted by law.
+
+Written by Boris Veytsman.
+END
+ use Getopt::Long;
my %opts;
- getopts('c:o:hV',\%opts) or die $USAGE;
+
+ GetOptions(
+ "config|c=s" => \($opts{c}),
+ "output|o=s" => \($opts{o}),
+ "rpi-is-xml!"=> \($opts{xi}),
+ "version|V" => \($opts{V}),
+ "help|?" => \($opts{h})) || pod2usage(1);
+
+ if ($opts{h}) { print "$USAGE\n$VERSION"; exit 0; }
+ if ($opts{V}) { print $VERSION; exit 0; }
+
use utf8;
binmode(STDOUT, ":utf8");
-if ($opts{h} || $opts{V}){
- print $VERSION;
- exit 0;
-}
-
################################################################
# Defaults and parameters
################################################################
@@ -107,32 +344,36 @@ if ($opts{h} || $opts{V}){
*OUT=*STDOUT;
if (defined($opts{o})) {
- open (OUT, ">$opts{o}") or die "Cannot open file $opts{o} for writing\n";
+ open (OUT, ">$opts{o}") or die "open($opts{o}) for writing failed: $!\n";
binmode(OUT, ":utf8")
}
- our $depositorName='DEPOSITOR_NAME';
- our $depositorEmail='DEPOSITOR_EMAIL';
- our $registrant='REGISTRANT';
+ our $depositorName = 'DEPOSITOR_NAME';
+ our $depositorEmail = 'DEPOSITOR_EMAIL';
+ our $registrant = 'REGISTRANT';
our $fullTitle = "FULL TITLE";
- our $abbrevTitle = "ABBR. Title.";
- our $issn = "1234-5678";
+ our $abbrevTitle = "ABBR. TTL.";
+ our $issn = "0000-0000";
our $coden = "CODEN";
- our $batchId="ltx2crossref$$";
- our $timestamp=strftime("%Y%m%d%H%M%S", gmtime);
+ our $timestamp = strftime("%Y%m%d%H%M%S", gmtime);
+ # use timestamp in batchid, since the value is supposed to be unique
+ # for every submission to crossref by a given publisher.
+ # https://data.crossref.org/reports/help/schema_doc/4.4.2/schema_4_4_2.html#doi_batch_id
+ our $batchId="ltx2crossref-$timestamp-$$";
if ($opts{c}) {
if (-r $opts{c}) {
- require $opts{c};
+ # if config arg is absolute, fine; if not, prepend "./" as slightly
+ # less troublesome than putting "." in the @INC path.
+ my $rel = (File::Spec->file_name_is_absolute($opts{c}) ? "" : "./");
+ require "$rel$opts{c}";
} else {
- die "Cannot read options $opts{c}. $USAGE";
+ die "Cannot read config file $opts{c}. Goodbye.";
}
}
-
-
PrintHead();
#
@@ -154,117 +395,159 @@ if ($opts{h} || $opts{V}){
}
}
}
-
}
PrintTail();
-
exit(0);
#####################################################
# Printing the head and the tail
#####################################################
-
sub PrintHead {
-
-
+ # do not output the <coden> or <abbrev_title> if the journal doesn't
+ # have them.
+ my $indent = " ";
+ my $coden_out = $coden ne "CODEN" ? "\n$indent<coden>$coden</coden>" : "";
+ my $abbrev_title_out = $abbrevTitle ne "ABBR. TTL."
+ ? "\n$indent<abbrev_title>$abbrevTitle</abbrev_title>"
+ : "";
+
+ # as of schema version 4.3.4, crossref renamed the <name> element
+ # inside <depositor> to <depositor_name>. Sigh. Something to take
+ # into account with older schemas.
+ # https://www.crossref.org/education/content-registration/crossrefs-metadata-deposit-schema/schema-versions/
print OUT <<END;
-<doi_batch xmlns="http://www.crossref.org/schema/4.3.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="4.3.0" xsi:schemaLocation="http://www.crossref.org/schema/4.3.0 http://www.crossref.org/schema/deposit/crossref4.3.0.xsd">
+<doi_batch xmlns="http://www.crossref.org/schema/4.4.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="4.4.2" xsi:schemaLocation="http://www.crossref.org/schema/4.4.2 http://www.crossref.org/schema/deposit/crossref4.4.2.xsd">
<head>
<doi_batch_id>$batchId</doi_batch_id>
<timestamp>$timestamp</timestamp>
<depositor>
- <name>$depositorName</name>
+ <depositor_name>$depositorName</depositor_name>
<email_address>$depositorEmail</email_address>
</depositor>
<registrant>$registrant</registrant>
</head>
- <body>
- <journal>
- <journal_metadata language="en">
- <full_title>$fullTitle</full_title>
- <abbrev_title>$abbrevTitle</abbrev_title>
- <issn>$issn</issn>
- <coden>$coden</coden>
- </journal_metadata>
+ <body><journal>
+ <journal_metadata language="en">
+ <full_title>$fullTitle</full_title>$abbrev_title_out
+ <issn>$issn</issn>$coden_out
+ </journal_metadata>
END
-
}
sub PrintTail {
print OUT <<END;
- </journal>
- </body>
+ </journal></body>
</doi_batch>
END
-return;
+ return;
}
#######################################################
-# Adding one paper
+# Adding one paper from $file.rpi and .bbl to global %papers.
#######################################################
-
sub AddPaper {
my $file = shift;
my ($name,$path,$suffix) = fileparse($file, '\.[^\.]*$');
my $rpifile = File::Spec->catfile($path, "$name.rpi");
- open (RPI, $rpifile) or die
- "Cannot find $rpifile. Did you process $file?\n";
+ open (RPI, $rpifile)
+ or die "open($rpifile) failed: $! (did you process $file?)\n";
my %data;
while (<RPI>) {
chomp;
if (/^%([^=]*)\s*=\s*(.*)\s*$/) {
- $data{$1}=$2;
+ if (exists $data{$1}) {
+ warn "$rpifile:$.: already saw data{$1}=$data{$1};"
+ . " an .rpi file should have data for only one article,"
+ . " but overwriting with `$2' anyway.\n";
+ }
+ $data{$1} = $2;
}
}
close RPI;
+
+ # look for bibliographies in both the .rpi and any .bbl file.
my @bibliography;
foreach my $bibfile ($file, File::Spec->catfile($path, "$name.bbl")) {
- @bibliography = (@bibliography,
- AddBibliography($bibfile));
+ @bibliography = (@bibliography, AddBibliography($bibfile));
+ }
+ $data{'bibliography'} = \@bibliography;
+
+ # Die if the fields we use unconditionally are empty. Not all of
+ # them are required by the schema, but we can wait to generalize.
+ foreach my $field (qw(title year volume issue startpage endpage doi)) {
+ if (! $data{$field}) {
+ die ("$0: field must not be empty: $field\n "
+ . &debug_hash_as_string("whole hash", %data));
+ }
}
- $data{'bibliography'}=\@bibliography;
+
push @{$papers{$data{year}}->{$data{volume}}->{$data{issue}}}, \%data;
}
##############################################################
-# Reading a list of papers and adding it to the
-# bibliography
+# Reading a list of papers from BIBFILE and adding it to the
+# bibliography. Each item is assumed to start with
+# \bibitem{KEY} and the whole bib to end with \end{thebibliography}.
+#
+# We return a list of hashes, each hash with a single key, the citation
+# key, and its value a flat string of the entry.
+#
+# No conversion of the text is done here.
##############################################################
-
sub AddBibliography {
my $bibfile = shift;
open (BIB, $bibfile) or return;
+
my $insidebibliography = 0;
- my $currpaper="";
+ my $currpaper = ""; # that is, the current bib entry
+ my $bibno = 0;
my @result;
my $key;
while (<BIB>) {
chomp;
- if (/^\s*\\bibitem(?:\[.*\])?+\{(.+)\}/) {
+ next if /^\s*%/; # TeX comment line
+ s/[ \t]%.*//; # remove TeX comment
+ #
+ # allow empty \bibitem key for the sake of handwritten bbls.
+ # Similarly, might be more stuff on the line when handwritten.
+ if (s/^\s*\\bibitem(?:\[.*?\])?+\s*\{(.*?)\}//) {
+ my $newkey = $1;
if ($insidebibliography) {
if ($currpaper) {
- my %paperhash;
- $paperhash{$key}=$currpaper;
+ # Append the current sequence number for this citation,
+ # since that's what Crossref recommends (sort of).
+ # For prettiness, if the key is otherwise empty,
+ # don't include a dash beforehand.
+ $bibno++;
+ $key .= ($key ? "-" : "") . $bibno;
+ #
+ my %paperhash;
+ $paperhash{$key} = $currpaper;
push @result, \%paperhash;
}
}
- $key = $1;
- $currpaper="";
- $insidebibliography=1;
+ # The citation key (required by schema) starts as the bibitem key.
+ $key = $newkey;
+
+ $currpaper = $_;
+ $insidebibliography = 1;
next;
}
if (/^\s*\\end\{thebibliography\}/) {
if ($currpaper) {
- my %paperhash;
- $paperhash{$key}=$currpaper;
- push @result, \%paperhash;
+ $bibno++;
+ $key .= ($key ? "-" : "") . $bibno;
+ #
+ my %paperhash;
+ $paperhash{$key} = $currpaper;
+ push @result, \%paperhash;
}
- $currpaper="";
- $insidebibliography=0;
+ $currpaper = "";
+ $insidebibliography = 0;
next;
}
if ($insidebibliography) {
@@ -272,25 +555,30 @@ sub AddBibliography {
}
}
close BIB;
+
+ # We look in the .rpi files too, which will generally have none.
+ if (@result == 0 && $bibfile =~ /\.bbl$/) {
+ warn "$0: no \\bibitems found in: $bibfile\n";
+ } elsif ($insidebibliography) {
+ warn "$0: no \\end{thebibliography} found in: $bibfile\n";
+ warn "$0: so the last bib entry is missing.\n";
+ }
return @result;
}
#################################################################
# Printing information about one issue
#################################################################
-
sub PrintIssueHead {
my ($year, $volume, $issue) = @_;
print OUT <<END;
- <journal_issue>
- <publication_date media_type="print">
- <year>$year</year>
- </publication_date>
- <journal_volume>
- <volume>$volume</volume>
- </journal_volume>
- <issue>$issue</issue>
- </journal_issue>
+ <journal_issue>
+ <publication_date media_type="print">
+ <year>$year</year>
+ </publication_date>
+ <journal_volume><volume>$volume</volume></journal_volume>
+ <issue>$issue</issue>
+ </journal_issue>
END
}
@@ -299,127 +587,206 @@ END
###############################################################
sub PrintPaper {
my $paper = shift;
- my $title=convert($paper->{title});
- my $url=GetURL($paper);
+ my $title = SanitizeText($paper->{title});
+ my $url = GetURL($paper);
+ my $publication_type = GetPublicationType($paper->{publicationType});
+
+ &TitleCheck($title);
print OUT <<END;
- <journal_article publication_type="full_text">
- <titles>
- <title>
- $title
- </title>
- </titles>
- <contributors>
+ <journal_article$publication_type>
+ <titles>
+ <title>$title</title>
+ </titles>
+ <contributors>
END
-my @authors = split /\s*\\and\s*/, $paper->{authors};
- my $seq='first';
+ my @authors = split /\s*\\and\s*/, $paper->{authors};
+ my $seq = 'first';
foreach my $author (@authors) {
- print OUT <<END;
- <person_name sequence="$seq" contributor_role="author">
-END
-$seq='additional';
- PrintAuthor($author);
- print OUT <<END;
- </person_name>
-END
-
+ PrintAuthor($author, $seq);
+ $seq = 'additional';
}
print OUT <<END;
- </contributors>
- <publication_date media_type="print">
- <year>$paper->{year}</year>
- </publication_date>
- <pages>
- <first_page>$paper->{startpage}</first_page>
- <last_page>$paper->{endpage}</last_page>
- </pages>
- <doi_data>
- <doi>$paper->{doi}</doi>
- <timestamp>$timestamp</timestamp>
- <resource>$url</resource>
- </doi_data>
+ </contributors>
+ <publication_date media_type="print">
+ <year>$paper->{year}</year>
+ </publication_date>
+ <pages>
+ <first_page>$paper->{startpage}</first_page>
+ <last_page>$paper->{endpage}</last_page>
+ </pages>
+ <doi_data>
+ <doi>$paper->{doi}</doi>
+ <timestamp>$timestamp</timestamp>
+ <resource>$url</resource>
+ </doi_data>
END
-if (scalar(@{$paper->{bibliography}})) {
+ if (scalar(@{$paper->{bibliography}})) {
print OUT <<END;
- <citation_list>
+ <citation_list>
END
foreach my $citation (@{$paper->{bibliography}}) {
PrintCitation($citation);
}
print OUT <<END;
- </citation_list>
+ </citation_list>
END
-}
+ }
print OUT <<END;
- </journal_article>
+ </journal_article>
END
+}
-}
+###############################################################
+# Crossref <title> strings can contain a few so-called "face" HTML
+# commands. Complain if they have anything anything else.
+# schema doc: https://data.crossref.org/reports/help/schema_doc/4.4.2/schema_4_4_2.html#title
+# face doc: https://www.crossref.org/education/content-registration/crossrefs-metadata-deposit-schema/face-markup/
+# mathml doc: https://www.crossref.org/education/content-registration/crossrefs-metadata-deposit-schema/including-mathml-in-deposits/
+#
+# We don't technically validate the string, e.g., mismatched tags will
+# go unnoticed here. The real validator at Crossref will catch whatever.
+###############################################################
+sub TitleCheck {
+ my $title = shift;
+ my $orig_title = $title;
+
+ foreach my $tag (qw(b em i ovl scp strong sub sup tt u)) {
+ $title =~ s,<\s*/?$tag\s*>,,g; # eradicate <tag> and </tag>
+ }
+
+ # <font> can (maybe?) take lots of extra attributes:
+ $title =~ s,<\s*/?font.*?>,,g;
+ # MathML is too complex; just wipe it all out. If there are
+ # problems, the real validator at Crossref will complain.
+ $title =~ s,<\s*mml:math.*/mml:math\s*>,,g;
+
+ # No tags should remain.
+ if ($title =~ /</) {
+ die "$0: invalid tags remaining in: $title (original: $orig_title)\n";
+ }
+}
###############################################################
-# Sanitization of a text string
+# Simplistic TeX-to-html
+# (no-op for rpi text if --input-is-xml was given).
###############################################################
sub SanitizeText {
my $string = shift;
- $string = convert($string);
- $string =~ s/\\newblock//g;
- $string =~ s/\\bgroup//g;
- $string =~ s/\\egroup//g;
- $string =~ s/\\scshape//g;
- $string =~ s/\\urlprefix//g;
- $string =~ s/\\emph//g;
- $string =~ s/\\textbf//g;
- $string =~ s/\\enquote//g;
- $string =~ s/\\url/URL: /g;
- $string =~ s/\\doi/DOI: /g;
- $string =~ s/\\\\/ /g;
- $string =~ s/\$//g;
- $string =~ s/\\checkcomma/,/g;
- $string =~ s/~/ /g;
- $string =~ s/[\{\}]//g;
+ return $string if $opts{xi}; # do nothing if --rpi-is-xml
+ return SanitizeTextAlways($string);
+}
+
+# Split into two functions so we can sanitize bbl but not rpi.
+sub SanitizeTextAlways {
+ my $string = shift;
+
+ # pass user hook subroutine if defined.
+ my @hook = (defined(&{"LaTeX_ToUnicode_convert_hook"}))
+ ? ("hook" => \&LaTeX_ToUnicode_convert_hook)
+ : ();
+
+ # conversion of accented control sequences to characters, etc.
+ # Let's use &#uuuu; entities instead of literal UTF-8; Crossref
+ # recommends it, and it's easier for postprocessing.
+ $string = LaTeX::ToUnicode::convert($string, entities => 1, @hook);
+
return $string;
}
################################################################
-# Printing one author
+# Printing one author in arg ORIG_AUTHOR, in sequence SEQ.
################################################################
sub PrintAuthor {
- my $author=shift;
+ my ($orig_author,$seq) = @_;
+
+ # recognize extra directives, either |organization|
+ # or |orcid=<value>|.
+ my $organization = 0;
+ my $orcid = 0;
+ my $author = "";
+ my @name_parts = split (/\|/, $orig_author);
+ foreach my $np (@name_parts) {
+ $np =~ s/^\s*(.*)\s*$/$1/s; # remove leading and trailing whitespace
+ if ($np eq "organization") {
+ $organization = 1;
+ } elsif ($np =~ /^orcid/) {
+ ($orcid = $np) =~ s/^orcid\s*=//;
+ $orcid =~ s/\s//g; # remove all whitespace from value
+ if (! $orcid) {
+ warn "$0: ignoring empty orcid specified in: $orig_author\n";
+ }
+ } elsif (! $np) {
+ # silently ignore empty part, as in ||
+ } else {
+ if ($author) {
+ die ("$0: already saw author name `$author', should not"
+ . " have second: $np\n");
+ }
+ $author = $np;
+ }
+ }
+
+ if ($organization && $orcid) {
+ die ("$0: orcid and organization cannot both be present in:"
+ . " $orig_author\n");
+ }
+
+ # for organizations, nothing to do but output it.
+ if ($organization) {
+ my $line = SanitizeText($author);
+ print OUT <<END;
+ <organization>$line</organization>
+END
+ return;
+ }
+
+ # what's left is the common case of a person, not an organization.
+ print OUT <<END;
+ <person_name sequence="$seq" contributor_role="author">
+END
+
my $person=new BibTeX::Parser::Author ($author);
if ($person->first) {
- my $line = $person->first;
- $line = SanitizeText($line);
- print OUT <<END;
- <given_name>$line</given_name>
+ my $line = $person->first;
+ $line = SanitizeText($line);
+ print OUT <<END;
+ <given_name>$line</given_name>
END
-
}
if ($person->last) {
- my $line = SanitizeText($person->last);
- if ($person->von) {
- $line = SanitizeText($person->von)." $line";
- }
- print OUT <<END;
- <surname>$line</surname>
+ my $line = SanitizeText($person->last);
+ if ($person->von) {
+ $line = SanitizeText($person->von)." $line";
+ }
+ print OUT <<END;
+ <surname>$line</surname>
END
-
}
if ($person->jr) {
- my $line = SanitizeText($person->jr);
- print OUT <<END;
- <suffix>$line</suffix>
+ my $line = SanitizeText($person->jr);
+ print OUT <<END;
+ <suffix>$line</suffix>
END
+ }
+ if ($orcid) {
+ print OUT <<END;
+ <ORCID>https://orcid.org/$orcid</ORCID>
+END
}
+ print OUT <<END;
+ </person_name>
+END
}
#############################################################
@@ -427,35 +794,92 @@ END
#############################################################
sub PrintCitation {
my $paperhash=shift;
+
foreach my $key (keys (%{$paperhash})) {
- my $citation=$paperhash->{$key};
- $citation=SanitizeText($citation);
+ my $citation = $paperhash->{$key};
+ $citation = SanitizeTextAlways($citation);
print OUT <<END;
- <citation key="$key">
- <unstructured_citation>
- $citation
- </unstructured_citation>
- </citation>
+ <citation key="$key"><unstructured_citation>
+ $citation
+ </unstructured_citation></citation>
END
+ }
}
+##############################################################
+# Return publication_type attribute for <journal_article>, given $PUBTYPE.
+# https://data.crossref.org/reports/help/schema_doc/4.4.2/schema_4_4_2.html#publication_type.atts
+#
+# If not specified in input, return " publication_type=full_text" since
+# it was hardwired that way before. If set to "omit", return empty
+# string. Else return " publication_type=$PUBTYPE>, if the value
+# is valid. If not, die. (Leading space is so result can be directly used.)
+##############################################################
+sub GetPublicationType {
+ my $pubtype = shift;
+ my $ret;
+
+ if (! $pubtype) {
+ $ret = "full_text";
+ } elsif ($pubtype eq "omit") {
+ $ret = "";
+ } elsif ($pubtype =~ /^(abstract_only|full_text|bibliographic_record)$/) {
+ $ret = $pubtype;
+ } else {
+ die "$0: invalid publication_type: $pubtype\n";
+ }
+
+ $ret = " publication_type=\"$ret\"" if $ret;
+ return $ret;
}
##############################################################
-# Calculating URL
+# Calculating URL. Res Philosophica gets special treatment.
##############################################################
-
sub GetURL {
my $paper = shift;
my $result;
if ($paper->{paperUrl}) {
- $result= $paper->{paperUrl}
+ $result = $paper->{paperUrl}
+
+ } elsif ($paper->{doi} =~ m,^10\.11612/resphil,) {
+ my $doi = $paper->{doi};
+ $result = 'http://www.pdcnet.org/oom/service?url_ver=Z39.88-2004&rft_val_fmt=&rft.imuse_synonym=resphilosophica&rft.DOI='.$doi.'&svc_id=info:www.pdcnet.org/collection';
+
} else {
- my $doi=$paper->{doi};
- $result= 'http://www.pdcnet.org/oom/service?url_ver=Z39.88-2004&rft_val_fmt=&rft.imuse_synonym=resphilosophica&rft.DOI='.$doi.'&svc_id=info:www.pdcnet.org/collection';
+ die ("$0: paperUrl field is required\n "
+ . &debug_hash_as_string("whole hash", $paper));
}
- $result =~ s/&/&#38;/g;
+
+ $result =~ s/&/&#x26;/g; # amp(ersand)
return $result;
}
+
+
+##############################################################
+# debug_hash_as_string($LABEL, HASH)
+#
+# Return LABEL followed by HASH elements, followed by a newline, as a
+# single string. If HASH is a reference, it is followed (but no recursive
+# derefencing).
+###############################################################
+sub debug_hash_as_string {
+ my ($label) = shift;
+ my (%hash) = (ref $_[0] && $_[0] =~ /.*HASH.*/) ? %{$_[0]} : @_;
+
+ my $str = "$label: {";
+ my @items = ();
+ for my $key (sort keys %hash) {
+ my $val = $hash{$key};
+ $val = ".undef" if ! defined $val;
+ $key =~ s/\n/\\n/g;
+ $val =~ s/\n/\\n/g;
+ push (@items, "$key:$val");
+ }
+ $str .= join (",", @items);
+ $str .= "}";
+
+ return "$str\n";
+}