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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%% %%%%%
%%%%% Default parameter settings for the LaTeX ``TeXtopo'' package %%%%%
%%%%% %%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%% %%%%%
%%%%% This example file contains all standard settings of the TeXtopo %%%%%
%%%%% package. It can be used as a template for the creation of perso- %%%%%
%%%%% nal parameter files. All TeXtopo user commands are allowed and %%%%%
%%%%% functional when specified here. %%%%%
%%%%% %%%%%
%%%%% To activate these settings for your topology plot load this file %%%%%
%%%%% by naming it as optional parameter at the beginning of the tex- %%%%%
%%%%% topo environment, e.g. %%%%%
%%%%% %%%%%
%%%%% \begin{textopo}[myparameterfile] %%%%%
%%%%% . %%%%%
%%%%% . %%%%%
%%%%% \end{textopo} %%%%%
%%%%% %%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\Nterm{intra} % Assume N-terminus intracellular
\loopextent{30} % Set loop extent to 30 residues
\shadingcolors{blues} % Use color scheme `blues' for shading
\showmembrane % Show the membrane
\membranecolors{Black}{White} % as black lines w/o filling
\labeloutside{extra} % Label extracellular side with `extra'
\labelinside{intra} % Label intracellular side with `intra'
\rulethickness{0.5pt} % Set thickness of label rules to 0.5pt
\countercolor{Red} % Use red color for position counter
\helixstyle{perspective} % Draw helical wheels in perspective
\showbonds % Show bonds on helical wheels
\hidemoment % Do not show hydrophobic moment
\momentcolor{Lavender} % Lavender color for hydrophobic moment
\scalemoment{100} % Moment rule length is 100%
\showwheelnumbering % Show residue numbers on helical wheels
\scalewheel{100} % Show full size helical wheel
\symbolsize{medium} % Use medium sized symbols in wheels
\donotshadestartMet % Do not shade the start methionine
\showNterm % Show amino terminus as NH2
\showCterm % Show carboxy terminus as COOH
\setfamily{labels}{sf} % Use sans serif family for labels
\setseries{labels}{md} % Use normal series for labels
\setshape {labels}{up} % Use upright shape for labels
\setfamily{membranelabels}{sf} % Use sans serif for membrane labels
\setseries{membranelabels}{md} % Use normal series for membrane labels
\setshape {membranelabels}{up} % Use upright shape for membrane labels
\setfamily{looplabels}{sf} % Use sans serif for loop labels
\setseries{looplabels}{bf} % Use bold face for loop labels
\setshape {looplabels}{up} % Use upright shape for loop labels
\looplabelcolor{Red} % Set loop label color to `Red'
\setfamily{TMlabels}{sf} % Use sans serif for TM labels
\setseries{TMlabels}{bf} % Use bold face for TM labels
\setshape {TMlabels}{up} % Use upright shape for TM labels
\TMlabelcolor{Blue} % Set TM label color to `Blue'
\labelTMs{\Romancount} % Label the TMs with roman numbers
\setfamily{legend}{sf} % Use sans serif font for legend texts
\setseries{legend}{md} % Use normal series for legend texts
\setshape {legend}{up} % Use upright shape for legend texts
\setsize {legend}{normalsize} % Use normal font size for legends
\legendcolor{Black} % Set legend text color to `Black'
\showlegend % Show the legend
\hidegrid % Do not show the grid
\labelstyle{CONFLICT} % Label style definitions for
{diamond}{Black}{Blue}{White} %
{Conflicting reports in literatur} % SwissProt data files
\labelstyle{VARIANT} % |
{diamond}{Black}{Orange}{Black} % |
{Sequence variants} % V
\labelstyle{VARSPLIC} %
{diamond}{Black}{Apricot}{Black} %
{Splice variants} %
\labelstyle{MUTAGEN} %
{diamond}{Black}{Red}{White} %
{Mutation sites} %
\labelstyle{SIGNAL} %
{square}{Black}{Yellow}{Black} %
{Signal peptide} %
\labelstyle{TRANSIT} %
{square}{Black}{Green}{Black} %
{Transit peptide} %
\labelstyle{PROPEP} %
{square}{Black}{Red}{White} %
{Propeptide} %
\labelstyle{CHAIN} %
{circ}{Black}{Aquamarine}{Blue} %
{Polypeptide chain} %
\labelstyle{PEPTIDE} %
{circ}{Black}{Peach}{Black} %
{Released peptide} %
\labelstyle{DOMAIN} %
{circ}{Black}{Turquoise}{Black} %
{Domain} %
\labelstyle{CABIND} %
{circ}{Black}{Gray50}{White} %
{Calcium binding domain} %
\labelstyle{DNABIND} %
{circ}{Black}{YellowGreen}{Black} %
{DNA binding domain} %
\labelstyle{NPBIND} %
{circ}{Black}{Melon}{Black} %
{Nucleotide phosphate binding} %
\labelstyle{ZNFING} %
{circ}{Black}{Lavender}{Black} %
{Zinc finger} %
\labelstyle{SIMILAR} %
{circ}{Black}{SpringGreen}{Black} %
{Similar region} %
\labelstyle{REPEAT} %
{circ}{Black}{Plum}{White} %
{Sequence repeat} %
\labelstyle{SITE} %
{circ}{Black}{ForestGreen}{White} %
{Special site} %
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