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\documentclass{book}
\usepackage{ifxetex,ifluatex}
\ifxetex
\usepackage{polyglossia}
\setmainlanguage{english}
\usepackage{fontspec}
\else\ifluatex
\usepackage{polyglossia}
\setmainlanguage{english}
\usepackage{fontspec}
\else
\usepackage[english]{babel}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{lmodern}
\fi\fi
\usepackage[
hashEnumerators,
definitionLists,
footnotes,
inlineFootnotes,
smartEllipses,
fencedCode,
contentBlocks
]{markdown}
\begin{document}
% Typeset the document `example.md` by letting the Markdown package handle
% the conversion internally.
\markdownInput{./example.md}
% Typeset the document `example.tex` that we prepared separately using the
% Lua command-line interface of the Markdown package and that contains a
% plain TeX representation of the document `example.md`.
\InputIfFileExists{./example.tex}{}{}
\begin{markdown}
Here are some non-ASCII characters: *ěščřžýáíé*.
\end{markdown}
\end{document}
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