From 6c088673b9f7d4b0e3b186b850d4fd6ba9997326 Mon Sep 17 00:00:00 2001 From: Karl Berry Date: Tue, 29 Sep 2015 22:08:57 +0000 Subject: lstbayes (29sep15) git-svn-id: svn://tug.org/texlive/trunk@38498 c570f23f-e606-0410-a88d-b1316a301751 --- .../texmf-dist/source/latex/lstbayes/lstbayes.dtx | 361 +++++++++++++++++++++ .../texmf-dist/source/latex/lstbayes/lstbayes.ins | 40 +++ 2 files changed, 401 insertions(+) create mode 100644 Master/texmf-dist/source/latex/lstbayes/lstbayes.dtx create mode 100644 Master/texmf-dist/source/latex/lstbayes/lstbayes.ins (limited to 'Master/texmf-dist/source') diff --git a/Master/texmf-dist/source/latex/lstbayes/lstbayes.dtx b/Master/texmf-dist/source/latex/lstbayes/lstbayes.dtx new file mode 100644 index 00000000000..8ccbfbf372a --- /dev/null +++ b/Master/texmf-dist/source/latex/lstbayes/lstbayes.dtx @@ -0,0 +1,361 @@ +% \iffalse meta-comment +% +% Copyright (C) 2015 by Jeffrey B. Arnold +% --------------------------------------------------------------------------- +% This work may be distributed and/or modified under the +% conditions of the LaTeX Project Public License, either version 1.3 +% of this license or (at your option) any later version. +% The latest version of this license is in +% http://www.latex-project.org/lppl.txt +% and version 1.3 or later is part of all distributions of LaTeX +% version 2005/12/01 or later. +% +% This work has the LPPL maintenance status `maintained'. +% +% The Current Maintainer of this work is Jeffrey B. Arnold. +% +% This work consists of the files lstbayes.dtx and lstbayes.ins +% and the derived filebase lstbayes.sty. +% +% \fi +% +% \iffalse +%<*driver> +\ProvidesFile{lstbayes.dtx} +% +%\NeedsTeXFormat{LaTeX2e}[1999/12/01] +%\ProvidesPackage{lstbayes} +%<*package> + [2015/09/27 lstbayes listings language drivers for BUGS, JAGS, and Stan] +% +% +%<*driver> +\documentclass{ltxdoc} +\usepackage{lstbayes} +\usepackage{hyperref} +\EnableCrossrefs +\CodelineIndex +\RecordChanges +\begin{document} + \DocInput{lstbayes.dtx} + \PrintChanges + \PrintIndex +\end{document} +% +% \fi +% +% \CheckSum{12} +% +% \CharacterTable +% {Upper-case \A\B\C\D\E\F\G\H\I\J\K\L\M\N\O\P\Q\R\S\T\U\V\W\X\Y\Z +% Lower-case \a\b\c\d\e\f\g\h\i\j\k\l\m\n\o\p\q\r\s\t\u\v\w\x\y\z +% Digits \0\1\2\3\4\5\6\7\8\9 +% Exclamation \! Double quote \" Hash (number) \# +% Dollar \$ Percent \% Ampersand \& +% Acute accent \' Left paren \( Right paren \) +% Asterisk \* Plus \+ Comma \, +% Minus \- Point \. Solidus \/ +% Colon \: Semicolon \; Less than \< +% Equals \= Greater than \> Question mark \? +% Commercial at \@ Left bracket \[ Backslash \\ +% Right bracket \] Circumflex \^ Underscore \_ +% Grave accent \` Left brace \{ Vertical bar \| +% Right brace \} Tilde \~} +% +% +% \changes{2015-09-26}{2015/09/26}{Converted to DTX file} +% \changes{2015-09-27}{2015/09/27}{Fix README} +% \changes{2015-09-28}{2015/09/27}{Fix README. Add keywords for all built-in functions that are in Stan v2.8.0.} +% +% \DoNotIndex{\newcommand,\newenvironment} +% +% \providecommand*{\url}{\texttt} +% \GetFileInfo{lstbayes.dtx} +% \title{The \textsf{lstbayes} package} +% \author{Jeffrey B. Arnold \\ \url{jeffrey.arnold@gmail.com}} +% \date{\fileversion~from \filedate} +% +% \maketitle +% +% \section{Introduction} +% +% This package provides language drivers for the \href{https://www.ctan.org/tex-archive/macros/latex/contrib/listings/}{\textsf{listings}} package for the several Bayesian modeling languages: BUGS, JAGS, and Stan. +% +% \section{Usage} +% +% % See the documentation of the \textsf{listings} package. +% + +% +% \StopEventually{} +% +% \section{Implementation} +% +% \iffalse +%<*package> +% \fi +% +% \begin{macrocode} +\RequirePackage{listings} +% \end{macrocode} +% +% \subsection{BUGS} +% +% Language driver for BUGS, including \href{http://www.openbugs.net/w/FrontPage}{WinBUGS} and \href{http://openbugs.net}{OpenBUGS}. +% The driver is based on \href{http://www.openbugs.net/Manuals/Manual.html}{OpenBUGS v. 3.2.3}. +% +% \begin{macrocode} +\lstdefinelanguage{BUGS}{ + morekeywords=[1]{for,in,model,T,I,C},% + morecomment=[l]{\#},% + sensitive=true,% + alsoletter={.},% + otherkeywords={<-,~},% + literate={<-}{{$\leftarrow$}}1 {~}{{$\sim$}}1% +} +\lstalias[]{OpenBUGS}[]{BUGS} +\lstalias[]{WinBUGS}[]{BUGS} +% \end{macrocode} +% +% \subsection{JAGS} +% +% Language driver for \href{http://mcmc-jags.sourceforge.net/}{JAGS}. +% The driver is based on JAGS version 3.4.0 (Sept 4, 2013). +% +% +% \begin{macrocode} +\lstdefinelanguage[]{JAGS}[]{BUGS}{ + morekeywords=[1]{data,var,const},% + morecomment=[n]{/*}{*/}% +} +% \end{macrocode} +% +% \subsection{Stan} +% +% Language driver for \href{http://mc-stan.org/}{Stan}. +% The driver is based on Stan modeling language version \href{https://github.com/stan-dev/stan/releases/download/v2.8.0/stan-reference-2.8.0.pdf}{2.8.0} (Sept 8, 2015). +% +% \begin{macrocode} +\lstdefinelanguage{Stan}{ + morekeywords=[1]{functions,data,parameters,transformed,model,generated,quantities,% + for,in,while,print,if,else,lp__,lower,upper,increment_log_prob,T,return,% + reject,integrate_ode},% + morekeywords=[2]{int,real,vector,% + ordered,positive_ordered,simplex,unit_vector,% + row_vector,matrix,% + cholesky_factor_corr,cholesky_factor_cov,% + coor_matrix,cov_matrix,% + void},% + morekeywords=[3]{% + Phi,Phi_approx,% + abs,acos,% + acosh,append_col,% + append_row,asin,% + asinh,atan,% + atan2,atanh,% + bernoulli_ccdf_log,bernoulli_cdf,% + bernoulli_cdf_log,bernoulli_log,% + bernoulli_logit_log,bernoulli_rng,% + bessel_first_kind,bessel_second_kind,% + beta_binomial_ccdf_log,beta_binomial_cdf,% + beta_binomial_cdf_log,beta_binomial_log,% + beta_binomial_rng,beta_ccdf_log,% + beta_cdf,beta_cdf_log,% + beta_log,beta_rng,% + binary_log_loss,binomial_ccdf_log,% + binomial_cdf,binomial_cdf_log,% + binomial_coefficient_log,binomial_log,% + binomial_logit_log,binomial_rng,% + block,categorical_log,% + categorical_logit_log,categorical_rng,% + cauchy_ccdf_log,cauchy_cdf,% + cauchy_cdf_log,cauchy_log,% + cauchy_rng,cbrt,% + ceil,chi_square_ccdf_log,% + chi_square_cdf,chi_square_cdf_log,% + chi_square_log,chi_square_rng,% + cholesky_decompose,col,% + cols,columns_dot_product,% + columns_dot_self,cos,% + cosh,crossprod,% + cumulative_sum,determinant,% + diag_matrix,diag_post_multiply,% + diag_pre_multiply,diagonal,% + digamma,dims,% + dirichlet_log,dirichlet_rng,% + distance,dot_product,% + dot_self,double_exponential_ccdf_log,% + double_exponential_cdf,double_exponential_cdf_log,% + double_exponential_log,double_exponential_rng,% + e,eigenvalues_sym,% + eigenvectors_sym,erf,% + erfc,exp,% + exp2,exp_mod_normal_ccdf_log,% + exp_mod_normal_cdf,exp_mod_normal_cdf_log,% + exp_mod_normal_log,exp_mod_normal_rng,% + expm1,exponential_ccdf_log,% + exponential_cdf,exponential_cdf_log,% + exponential_log,exponential_rng,% + fabs,falling_factorial,% + fdim,floor,% + fma,fmax,% + fmin,fmod,% + frechet_ccdf_log,frechet_cdf,% + frechet_cdf_log,frechet_log,% + frechet_rng,gamma_ccdf_log,% + gamma_cdf,gamma_cdf_log,% + gamma_log,gamma_p,% + gamma_q,gamma_rng,% + gaussian_dlm_obs_log,get_lp,% + gumbel_ccdf_log,gumbel_cdf,% + gumbel_cdf_log,gumbel_log,% + gumbel_rng,head,% + hypergeometric_log,hypergeometric_rng,% + hypot,if_else,% + int_step,inv,% + inv_chi_square_ccdf_log,inv_chi_square_cdf,% + inv_chi_square_cdf_log,inv_chi_square_log,% + inv_chi_square_rng,inv_cloglog,% + inv_gamma_ccdf_log,inv_gamma_cdf,% + inv_gamma_cdf_log,inv_gamma_log,% + inv_gamma_rng,inv_logit,% + inv_sqrt,inv_square,% + inv_wishart_log,inv_wishart_rng,% + inverse,inverse_spd,% + is_inf,is_nan,% + lbeta,lgamma,% + lkj_corr_cholesky_log,lkj_corr_cholesky_rng,% + lkj_corr_log,lkj_corr_rng,% + lmgamma,log,% + log10,log1m,% + log1m_exp,log1m_inv_logit,% + log1p,log1p_exp,% + log2,log_determinant,% + log_diff_exp,log_falling_factorial,% + log_inv_logit,log_mix,% + log_rising_factorial,log_softmax,% + log_sum_exp,logistic_ccdf_log,% + logistic_cdf,logistic_cdf_log,% + logistic_log,logistic_rng,% + logit,lognormal_ccdf_log,% + lognormal_cdf,lognormal_cdf_log,% + lognormal_log,lognormal_rng,% + machine_precision,max,% + mdivide_left_tri_low,mdivide_right_tri_low,% + mean,min,% + modified_bessel_first_kind,modified_bessel_second_kind,% + multi_gp_cholesky_log,multi_gp_log,% + multi_normal_cholesky_log,multi_normal_cholesky_rng,% + multi_normal_log,multi_normal_prec_log,% + multi_normal_rng,multi_student_t_log,% + multi_student_t_rng,multinomial_log,% + multinomial_rng,multiply_log,% + multiply_lower_tri_self_transpose,neg_binomial_2_ccdf_log,% + neg_binomial_2_cdf,neg_binomial_2_cdf_log,% + neg_binomial_2_log,neg_binomial_2_log_log,% + neg_binomial_2_log_rng,neg_binomial_2_rng,% + neg_binomial_ccdf_log,neg_binomial_cdf,% + neg_binomial_cdf_log,neg_binomial_log,% + neg_binomial_rng,negative_infinity,% + normal_ccdf_log,normal_cdf,% + normal_cdf_log,normal_log,% + normal_rng,not_a_number,% + num_elements,ordered_logistic_log,% + ordered_logistic_rng,owens_t,% + pareto_ccdf_log,pareto_cdf,% + pareto_cdf_log,pareto_log,% + pareto_rng,pareto_type_2_ccdf_log,% + pareto_type_2_cdf,pareto_type_2_cdf_log,% + pareto_type_2_log,pareto_type_2_rng,% + pi,poisson_ccdf_log,% + poisson_cdf,poisson_cdf_log,% + poisson_log,poisson_log_log,% + poisson_log_rng,poisson_rng,% + positive_infinity,pow,% + prod,qr_Q,% + qr_R,quad_form,% + quad_form_diag,quad_form_sym,% + rank,rayleigh_ccdf_log,% + rayleigh_cdf,rayleigh_cdf_log,% + rayleigh_log,rayleigh_rng,% + rep_array,rep_matrix,% + rep_row_vector,rep_vector,% + rising_factorial,round,% + row,rows,% + rows_dot_product,rows_dot_self,% + scaled_inv_chi_square_ccdf_log,scaled_inv_chi_square_cdf,% + scaled_inv_chi_square_cdf_log,scaled_inv_chi_square_log,% + scaled_inv_chi_square_rng,sd,% + segment,sin,% + singular_values,sinh,% + size,skew_normal_ccdf_log,% + skew_normal_cdf,skew_normal_cdf_log,% + skew_normal_log,skew_normal_rng,% + softmax,sort_asc,% + sort_desc,sort_indices_asc,% + sort_indices_desc,sqrt,% + sqrt2,square,% + squared_distance,step,% + student_t_ccdf_log,student_t_cdf,% + student_t_cdf_log,student_t_log,% + student_t_rng,sub_col,% + sub_row,sum,% + tail,tan,% + tanh,tcrossprod,% + tgamma,to_array_1d,% + to_array_2d,to_matrix,% + to_row_vector,to_vector,% + trace,trace_gen_quad_form,% + trace_quad_form,trigamma,% + trunc,uniform_ccdf_log,% + uniform_cdf,uniform_cdf_log,% + uniform_log,uniform_rng,% + variance,von_mises_log,% + von_mises_rng,weibull_ccdf_log,% + weibull_cdf,weibull_cdf_log,% + weibull_log,weibull_rng,% + wiener_log,wishart_log,% + wishart_rng,bernoulli,% + bernoulli_logit,beta,% + beta_binomial,binomial,% + binomial_logit,categorical,% + categorical_logit,cauchy,% + chi_square,dirichlet,% + double_exponential,exp_mod_normal,% + exponential,frechet,% + gamma,gaussian_dlm_obs,% + gumbel,hypergeometric,% + inv_chi_square,inv_gamma,% + inv_wishart,lkj_corr,% + lkj_corr_cholesky,logistic,% + lognormal,multi_gp,% + multi_gp_cholesky,multi_normal,% + multi_normal_cholesky,multi_normal_prec,% + multi_student_t,multinomial,% + neg_binomial,neg_binomial_2,% + neg_binomial_2_log,normal,% + ordered_logistic,pareto,% + pareto_type_2,poisson,% + poisson_log,rayleigh,% + scaled_inv_chi_square,skew_normal,% + student_t,uniform,% + von_mises,weibull,% + wiener,wishart% + },% + otherkeywords={<-,~},% + sensitive=true,% + morecomment=[l]{\#},% + morecomment=[l]{//},% + morecomment=[n]{/*}{*/},% + string=[d]"%, + literate={<-}{{$\leftarrow$}}1 {~}{{$\sim$}}1% +} +% \end{macrocode} + +% +% \iffalse +% +% \fi +% +% \Finale + diff --git a/Master/texmf-dist/source/latex/lstbayes/lstbayes.ins b/Master/texmf-dist/source/latex/lstbayes/lstbayes.ins new file mode 100644 index 00000000000..30c906f57e2 --- /dev/null +++ b/Master/texmf-dist/source/latex/lstbayes/lstbayes.ins @@ -0,0 +1,40 @@ +%% +%% Copyright (C) 2015 by Jeffrey B. Arnold +%% +%% This file may be distributed and/or modified under the +%% conditions of the LaTeX Project Public License, either +%% version 1.3 of this license or (at your option) any later +%% version. The latest version of this license is in: +%% +%% http://www.latex-project.org/lppl.txt +%% +%% and version 1.3 or later is part of all distributions of +%% LaTeX version 2005/12/01 or later. +%% +\input docstrip.tex +\keepsilent +\askforoverwritefalse + +\usedir{tex/latex/lstbayes} + +\preamble + +This is a generated file. + +Copyright (C) 2015 by Jeffrey B. Arnold + +This file may be distributed and/or modified under the conditions of +the LaTeX Project Public License, either version 1.3c of this license +or (at your option) any later version. The latest version of this +license is in: + + http://www.latex-project.org/lppl.txt + +and version 1.3c or later is part of all distributions of LaTeX +version 2006/05/20 or later. + +\endpreamble + +\generate{\file{lstbayes.sty}{\from{lstbayes.dtx}{package}}} + +\endbatchfile -- cgit v1.2.3