From c7f2ce5fcf476bf2b530bd5dcbeb4fc3e7b72f31 Mon Sep 17 00:00:00 2001 From: Karl Berry Date: Mon, 13 Jul 2015 22:19:02 +0000 Subject: mcf2graph (13jul15) git-svn-id: svn://tug.org/texlive/trunk@37853 c570f23f-e606-0410-a88d-b1316a301751 --- Master/texmf-dist/doc/metapost/mcf2graph/README | 113 +++ .../doc/metapost/mcf2graph/mcf_exa_soc.mf | 564 +++++++++++++++ .../doc/metapost/mcf2graph/mcf_example.pdf | Bin 0 -> 284895 bytes .../doc/metapost/mcf2graph/mcf_example.tex | 80 +++ .../doc/metapost/mcf2graph/mcf_man_soc-030.eps | 71 ++ .../doc/metapost/mcf2graph/mcf_man_soc.mf | 262 +++++++ .../doc/metapost/mcf2graph/mcf_manual.pdf | Bin 0 -> 187999 bytes .../doc/metapost/mcf2graph/mcf_manual.tex | 572 +++++++++++++++ Master/texmf-dist/metapost/mcf2graph/mcf2graph.mf | 764 +++++++++++++++++++++ Master/tlpkg/bin/tlpkg-ctan-check | 2 +- Master/tlpkg/libexec/ctan2tds | 5 +- Master/tlpkg/tlpsrc/collection-metapost.tlpsrc | 1 + Master/tlpkg/tlpsrc/mcf2graph.tlpsrc | 0 13 files changed, 2432 insertions(+), 2 deletions(-) create mode 100644 Master/texmf-dist/doc/metapost/mcf2graph/README create mode 100644 Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf create mode 100644 Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf create mode 100644 Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex create mode 100644 Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc-030.eps create mode 100644 Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf create mode 100644 Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf create mode 100644 Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex create mode 100644 Master/texmf-dist/metapost/mcf2graph/mcf2graph.mf create mode 100644 Master/tlpkg/tlpsrc/mcf2graph.tlpsrc diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/README b/Master/texmf-dist/doc/metapost/mcf2graph/README new file mode 100644 index 00000000000..66dbc7dfcf2 --- /dev/null +++ b/Master/texmf-dist/doc/metapost/mcf2graph/README @@ -0,0 +1,113 @@ +******************************************************************************* + mcf2graph : Metapost/Metafont macro convert Molecular Coding Format to graphic + Author : Akira Yamaji + DATE : 2015/07/11 + E-mail : akira.yamaji5@gmail.com + Web site : http://molecoding.cocolog-nifty.com/blog/ +******************************************************************************* + +1. Introduction + + Molecular Coding Format(MCF) is new linear notation represent chmical + structure diagram. + mcf2graph(metapost/metafont macro) convert MCF file to + graphic file(pk font/PNG/SVG/EPS) or MDL MOL file(V2000). + The software, MCF syntax manual,TeX example can get from authors web site. + + +2. The distribution of software + +( 1) README This file + +( 2) mcf_graph.mf Macro of Metapost / Metafont + +( 3) mcf_manual.tex MCF syntax manual(LaTeX file) +( 4) mcf_man_soc.mf MCF file for mcf_manual.tex +( 5) mcf_man_soc-030.eps No.30 EPS(with color) file from (4) +( 6) mcf_manual.pdf PDF file of mcf_manual.tex + +( 7) mcf_example.tex LaTeX example +( 8) mcf_exa_soc.mf MCF file for mcf_example.tex +( 9) mcf_exa_soc-info.log Infomation file from (8) +(10) mcf_example.pdf PDF file of mcf_example.tex + + +3. Use mcf2graph.mf + +(1) mpost -s ahangle=1 FILENAME output PNG file. (default value is eps) +(2) mpost -s ahangle=2 FILENAME output SVG file. +(3) mpost -s ahangle=3 FILENAME output MDL Molfile(V2000) +(4) mpost -s ahangle=0 FILENAME output no graphic file. +(5) mpost -s ahlength=1 FILENAME output first definition only (for test) +(6) mpost -s ahlength=2 FILENAME output checklist. +(7) Large number of molecular structures can be gathering by using TEX. + mcf_example.tex is example of use LaTeX. + + +4. Molecular Coding Format example + +input mcf2graph.mf; % input main system +font_wd#:=30mm#; % font width +font_ht#:=20mm#; % font height +max_bond_width:=0.2; % max fond length/font width +sw_logout:=1; % log file out +sw_frame:=0; % add frame +sw_expand:=0; % expand substituent mode +sw_start_vecor:=0; % start vector mode +sw_numberingA:=0; % atom adress mode +sw_numberingB:=0; % bond adress mode +%%sw_checklist:=1; % check list mode +%%sw_MOLfile:=1; % Mdl molfile(V2000) +%*********************************************************************** +beginfont("EN:Acetamiprid") % Molecular name 1 + MCf(^^30,Ph,4\,!,NH,!,!~dr,N,!,CN)% % Molecular Coding Format +endfont +%*********************************************************************** +bye + +5. Use TeX(latex) + + +\documentclass[a4paper]{article} +\usepackage{graphicx} +\pagestyle{empty} + +% insert part of info LOG file + +%------------------------------------------------------------------------- +\MOLinfo{EN:Acetamiprid}{:}{:}{:}% +{:}{:}{:}{:}% +{:}{:}{:}{:}% +\MCFinfo{MCF_SOC2}{0}{MCF_SOC2-000.eps}{419.14972}{145.32037}{159.04236}{12}{0}{}% +%------------------------------------------------------------------------- + +%% filename of souce file : mcf_exa_soc.mf + +\input mcf_exa_soc-info.log + +\end{document} + +\end{verbatim} +%---------------------------------------------------------------------------- + + +6. License + + Permission is hereby granted, free of charge, to any person obtaining a copy + of this software and associated documentation files (the "Software"), to deal + in the Software without restriction, including without limitation the rights + to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + + The above copyright notice and this permission notice shall be included in + all copies or substantial portions of the Software. + + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + THE SOFTWARE. + diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf new file mode 100644 index 00000000000..2c73bcf67c3 --- /dev/null +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf @@ -0,0 +1,564 @@ +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% Molecular Coding Format souce No.2 by Akira Yamaji 2015.5 +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +input mcf2graph.mf; +%------------------------------------------------------------------------- +font_wd#:=35mm#; +font_ht#:=25mm#; +max_bond_width:=0.15; +%------------------------------------------------------------------------- +sw_logout:=1; +sw_frame:=0; +sw_atom_frame:=0; +sw_numberB:=0; +sw_expand:=0; +sw_start_vector:=0; +%%%%sw_checklist:=1; +%%%%sw_MOLfile:=1; +%*********************************************************************** +beginfont("EN:Acetamiprid") + MCf(^^30, + Ph,4\,!,NH,!,!~dr,N,!,CN + ) +endfont +%*********************************************************************** +beginfont("EN:Imidacloprid") + MCf(^^30, + Ph1,1:N,6:/Cl,3\,!,?5,1:N,3:NH,-4\\,!,NO2 + ) +endfont +%*********************************************************************** +beginfont("EN:Ethofenprox") + MCf(^^30, + Ph,5\,!,Ph,-4\,O,!3,/Me^35,/Me^-35,!,Ph,-3:/OEt + ) +endfont +%*********************************************************************** +beginfont("EN:Thiamethoxam") + MCf(^^30, + ?6,@(4,6)N,2:O,6:/Me,5\\,!,NO2,4\,!,?5,$(1,3)d,3:N,5:S,4:/Cl + ) +endfont +%*********************************************************************** +beginfont("EN:Tebufenozide") + MCf(^^30, + Ph,6:/Et,3\,//O,!,NH,!,N,/tBu,!,//O,!,Ph,@(3,5)/Me + ) +endfont +%*********************************************************************** +beginfont("EN:Pyridaphenthion") + MCf(^^-30, + !2,O,!,P,//S,/OEt^160>rl,!,O,!,?6,$(1,5)dl,@(2,3)N,4://O,3:/Ph + ) +endfont +%*********************************************************************** +beginfont("EN:Fenitrothion") + MCf(^^30, + !,O,!,P,//S,/OMe^160,!,O,!,Ph,3:/Me,4:/NO2 + ) +endfont +%*********************************************************************** +beginfont("EN:Permethrin") + MCf( + ^^-30, + ?3,2^-35:*/Me,2^35:/*Me,1\,!~dl,/Cl,!,Cl, + 3\,//O,!,O,!2,Ph,-4\>rl,O,!,Ph + ) +endfont +%*********************************************************************** +beginfont("EN:Bensultap") + MCf(^^30, + Ph,4\,SOO,!,S,!2,N,/Me,!2,S,!,SOO,!,Ph + ) +endfont +%*********************************************************************** +beginfont("EN:Azoxystorbin") + MCf(^^30, + Ph,2:/OH,3\,O,!,Ph,@(4,6)N,-4\,O,!,Ph,-5\,/OMe,!,//O,!,O,! + ) +endfont +%*********************************************************************** +beginfont("EN:Isoprothiolane") + MCf(^^30, + !,/Me,!,O,!,//O,!2,//O,!,O,!,/Me,!,-5\\,?5,@(2,5)S + ) +endfont +%*********************************************************************** +beginfont("EN:Iprodion") + MCf(^^18, + ?5,@(3,5)N,2://O,3\,Ph,@(3,5)/Cl,#5\,!,NHiPr + ) +endfont +%*********************************************************************** +beginfont("EN:Etridiazole") + MCf(^^18, + ?5,$(1,3)dl,@(2,4)N,5:S,1:/OEt,3:/CCl3,1:/Me + ) +endfont +%*********************************************************************** +beginfont("EN:Oxine-Copper") + MCf( + Ph,4:N,-2=Ph,-4\,O,-60,^^90,Cu,-90,O,60,Ph,-2=Ph,4:N, + #4*,&(#12)~vf,#23*,&(#12)~vf + ) +endfont +%*********************************************************************** +beginfont("EN:Captan") + MCf(^^0, + ?6,6=d,-4=?5,2:N,@(1,3)//O,#8\,S,!,CCl3 + ) +endfont +%*********************************************************************** +beginfont("EN:Chlorothalonil") + MCf(^^30, + Ph,@(1,2,4,6)/Cl,@(3,5)/CN + ) +endfont +%*********************************************************************** +beginfont("EN:Tetraconazole") + MCf(^^-6, + ?5,$(2,5)d,@(1,2,4)N,4\,!4,4:O,/F^35,/F^-35,!,CF2,#7\,Ph,@(4,6)/Cl + ) +endfont +%*********************************************************************** +beginfont("EN:Endosulfan"); + MCf(^^30, + {,``1.3,?6,3=?7,},2*,210~wf`1.45,&5~wb,6=d, + @(1,2,5,6,12^-210,12^-150)/Cl,@(8,10)O,9:S,9://O + ) +endfont; +%*********************************************************************** +beginfont("EN:Flutolanil") + MCf(^^30, + Ph,2:/CF3,3\,//O,!,NH,!,Ph,-1:/OiPr + ) +endfont +%*********************************************************************** +beginfont("EN:Propiconazole") + MCf(^^-6, + ?5,$(2,5)d,@(1,3,4)N,4\,!2,Ph,@(4,6)/Cl,#7\,?5,@(2,5)O,-3^24:/Bu + ) +endfont +%*********************************************************************** +beginfont("EN:Pencycuron") + MCf(^^30, + Ph,6:/Cl,3\,!,N,/?6,!,//O,!,NH,!,Ph + ) +endfont +%*********************************************************************** +beginfont("EN:Asulam") + MCf(^^30, + Ph,6:/NH2,3\,SOO,!,NH,!,//O,!,O,! + ) +endfont +%*********************************************************************** +beginfont("EN:Oxadixyl") + MCf(^^30, + Ph,@(1,3)/Cl,4\,?5,2=d,@(1,2)N,4:O,5://O,-3:/tBu,#6\,O,!2,!~tm + ) +endfont +%*********************************************************************** +beginfont("EN:Oxaziclomefone") + MCf(^^30, + ?6,4:N,2:O,1:/Me,5://O,6:/Ph,4\,/Me^35,/Me^-35,!,Ph,@(3,5)/Cl + ) +endfont +%*********************************************************************** +beginfont("EN:Cafenstrole") + MCf(^^30, + Ph,@(2,4,6)/Me,3\,SOO,!,?5,$(2,5)d,@(2,4,5)N,-2\,!,N,/Me,!2 + ) +endfont +%*********************************************************************** +beginfont("EN:Cyclosulfamuron") + MCf(^^30, + Ph,5\,//O,!,?3,#4\,NH,!,SOO,!,NH,!,//O,!,NH,!,Ph,@(2,6)N,@(3,5)/OMe + ) +endfont +%*********************************************************************** +beginfont("EN:Napropamide") + MCf(^^-30, + Ph,-4=Ph,#10\,O,!,/Me^35,/Me^-35,!,//O,!,N,/Et,! + ) +endfont +%*********************************************************************** +beginfont("EN:Pyributicarb") + MCf(^^30, + Ph,5:/tBu,3\,//O,!,S,!,N,/Me,!,Ph,@(5,6)/Me,3:/OMe + ) +endfont +%*********************************************************************** +beginfont("EN:Propyzamide") + MCf(^^30, + Ph,@(1,5)/Cl,3\,//O,!,NH,!,/Me^35,/Me^-35,!,!~tm + ) +endfont +%*********************************************************************** +beginfont("EN:Pendimethalin") + MCf(^^30, + Ph,@(1,2)/Me,6:/Cl,@(3,5)/NO2,4\,NH,!,/Et,!2 + ) +endfont +%*********************************************************************** +beginfont("EN:Benfluralin") + MCf(^^30, + Ph,@(1,3)/NO2,5:/CF3,2\,N,/Et,!4 + ) +endfont +%*********************************************************************** +beginfont("EN:Trinexapac-ethyl") + MCf(^^30, + ?6,@(2,4)//O,6:/COOEt,3\\,/OH,!,?3 + ) +endfont +%*********************************************************************** +beginfont("EN:Buprofezin") + MCf(^^-30, + ?6,@(1,5)N,3:S,6://O,5:/tBu,4\\,N,!,tBu,1:/Ph + ) +endfont +%*********************************************************************** +beginfont("EN:Tricyclazole") + MCf(^^30, + Ph,2:/Me,-4=?5,1:N,3:S,-3=?5,$(2,4)d,@(2,3)N + ) +endfont +%*********************************************************************** +beginfont("EN:Phthalide") + MCf(^^30, + Ph,@(1,2,5,6)/Cl,-4=?5,2:O,3://O + ) +endfont +%*********************************************************************** +beginfont("EN:Probenazole") + MCf(^^12, + Ph,3:d,-4=?5,1:SOO,2:N,3\,O,!2,!~dr + ) +endfont +%*********************************************************************** +beginfont("EN:Esprocarb") + MCf(^^30, + Ph,3\,!,S,!,//O,!,N,/Et,!,/iPr,! + ) +endfont +%*********************************************************************** +beginfont("EN:Simetryn") + MCf(^^30, + Ph,@(2,4,6)N,5:/SMe,@(1,3)/NHEt + ) +endfont +%*********************************************************************** +beginfont("EN:Bromobutide") + MCf(^^30, + Ph,3\,!,NH,!,//O,!,/Br,!,/Me^35,/Me^-35,!,tBu + ) +endfont +%*********************************************************************** +beginfont("EN:Mefenacet") + MCf(^^12, + Ph,-4=?5,3=d,3:N,1:S,2\,O,!2,//O,!,N,/Me,!,Ph + ) +endfont +%*********************************************************************** +beginfont("EN:Rifampicin") + MCf(^^30, + Ph,6:/Me^30,5:/OH,-6=?5,1:O,3://O,2:/*Me^60,#3=?6,@(2,4)d,@(1,4)/OH, + {,``1,-2\,NH,60,//O,-60,/Me,60~dl,60,60~dl,-60, + */Me,60,/*OH,-60,/*Me,60,/*OH,60,*/Me^30,-60, + 60,/*Me^30,-53,/*OMe,66,-53~dl,66`1.2,O,},&(#8), + #11\,!~dr,N,!,?6,@(1,4)N,4:/Me + ) +endfont +%*********************************************************************** +beginfont("EN:Wortmanin") + MCf(^^30, + {,?6,-4=?6,-2=?6,-4=?5,(#2,#7)=?5[3],}, + 6:O,1://O,$(7,10)dl,8://O,17://O,-3=d,-1:O, + @(4,12)*/Me^60,11:/*H^-60, + #5\*,60,O,!,#14\*^-25,//O,!,O,! + ) +endfont +%*********************************************************************** +beginfont("EN:Ampicillin") + MCf(^^45, + ?4,-3=??5,2:N,7:S, + @(3^45,4^-45)/*H,1://O^15,5:/*COOH^-18,@(6^35,6^-35)/Me, + ,4\^75,NH,!,//O,!,NH,!,Ph, + ) +endfont +%*********************************************************************** +beginfont("EN:Validamycin") + MCf(^^30, + ?6,@(5,6)/OH,3\,-60,OH, + #4\,O,-60,?6,2:O,@(3,4,5,6)/OH, + #1\,NH,!,?6,2=d,@(4,5,6)/OH,-4\,!,OH + ) +endfont +%********************************************************************** +beginfont("EN:Oceltamivir") + MCf(^^30, + ?6,3=dl,1:/NH2,3:/COOEt,6:/NHCOMe,5\~zf,O,!,/Et,!2 + ) +endfont +%*********************************************************************** +beginfont("EN:Etyprostontromethamine") + MCf(^^0, + ?5,@(2,5)/*OH, + #3*\^6,!~dl,!3,O,0,Ph,#8*,?5,@(1,4)O,#4\*^-6,!,30~dl,30,!3,COOH + ) +endfont +%*********************************************************************** +beginfont("EN:Chlorophyll a") +MCf(^^54, + {,``1,?5,$(2,5)dl,4:N,3\,54~dl,?5,$(2,4)dl,5:N, + -2\,54~dl,?5,2=d,5:N,-2\~dl,54,?5,5=d,5:N,-2\~dl,&(#5), + -1*,24,/*COOMe^15,72,//O,&(#1),}, + @(2,9,15,20~zf)/Me,8:/Et,14\,!~dr, + #4\`1.45,Mg,&17,-1*,&11~vb,-1*,&23~vb, + #21*,-6~wf,!2,//O,!,O,!2,!~dl,!13,@(1,5,9,13)/Me + ) +endfont +%********************************************************************** +beginfont("EN:Gibberellin"); + MCf(^^12, + {,``1.3,?6,3=??5,9=??7,},12\^160`1.6,&8, + 4\^155~zf`-1.2,O,55,//O^180`1,&(#2)~zb, + 3=dr,11=wf,13=wb,7:/COOH,11://Me,1:*/OH,12:/*OH,2:*/Me, + @(3^-60,9^60)*/H) +endfont; +%********************************************************************** +beginfont("EN:Cholesterol") + MCf(^^30, + ?6,$(-4,-2)??6,-4=??5,7=dl, + 1:*/OH,@(4,12)*/Me^60, + 10:/*H^180,@(11,-1)/*H^-60,9:*/H^60, + -1\^17,/*Me,!4,/Me,! + ) +endfont +%*********************************************************************** +beginfont("EN:Lycorine") + MCf(^^30, + Ph,-4=??6,-2=??6,6=??5,(9,12)=??5[3],13=dl,8:N,@(15,17)O, + 9:/*H^180,10:*/H^60,13:*/OH,14:/*OH + ) +endfont +%*********************************************************************** +beginfont("EN:Tetrodotoxine") + MCf({,``1,^^60,-90,60,-30`1.15,150,60,&(#1),#3*,-135,60,-30`1.15,150,&(#4), + #10\,O,60`1.33,60,&(#3)~ov,#8*,-15~ov,O,&(#12),},#9*,45,-60,OH,1^120://NH, + @(5~zf^-15,7,9^-75,12,13~zf)/OH,@(2,6^180)NH + ) +endfont +%*********************************************************************** +beginfont("EN:beta-Carotene") + MCf(^^30, + ?6,3=d,@(3,5^35,5^-35)/Me, + 4\,,!18,$(1,3,5,7,9,11,13,15,17)dr,@(3,7,12,16)/Me, + ?6,6=d,@(6,2^35,2^-35)/Me + ) +endfont +%********************************************************************** +beginfont("EN:alfa-Tocopherol") + MCf(^^30, + Ph,3=??6,7:O,@(1,2,5)/Me,8:/*Me^60,6:/OH, + 8\,!12,@(4,8)/*Me,12:/Me + ) +endfont +%********************************************************************** +beginfont("EN:Qercetin") + MCf(^^30, + Ph,3=??6,9\,ph,9=dl,10:O,7://O,@(2,6,8,13,14)/OH + ) +endfont +%*********************************************************************** +beginfont("EN:Limonin") +MCf(^^30, + {,?6,-3=?6,-4=?6,3:O,-5=?3,1:O,1=wf,2=wb,#6=?5,2:O,-4=?6,2:O,-5=wf, + #14\*,?5,$(1,4)dl,3:O,},@(3,12,21)//O, + @(4~wf^60,8~zf^60,18^35,18^-35)/Me,@(1^60,5^180,16^60)/*H +) +endfont +%********************************************************************** +beginfont("EN:Cromolyn") + MCf(^^30, + Ph,-1=?6,3:d,-4:O,-1://O,-3:/COOH, + #2\,O,!2,/OH,!2,O,60,Ph,-5=?6,3=d,-1:O,-4://O,-2:/COOH + ) +endfont +%********************************************************************** +beginfont("EN:Emetine") + MCf(^^30, + {,Ph,-4=?6,2:N,-4=?6,},@(1,6)/OMe,-2:/*Et,@(7^-60,12^-60)/*H, + -3\,!~zb,^^-60,?6,5=d,2:NH,-6^-60:*/H,-2=?6,$(2,4)dl + ) +endfont +%*********************************************************************** +beginfont("EN:Colchicine") + MCf(^^30, + Ph,@(1,2,6)/OMe,-4=?7,-5=?7,$(-1,-4,-6)dl,-2://O,-3:/OMe, + #9\,NH,!,//O,! + ) +endfont +%*********************************************************************** +beginfont("EN:Caffeine") + MCf(^^30, + ?6,3=d,@(2,6)N,@(2,6)/Me,@(1,5)//O,-4=?5,2=d,@(1,3)N,3:/Me + ) +endfont +%********************************************************************** +beginfont("EN:Acronycine") + MCf(^^30, + Ph,-4=?6,1:N,4://O,,1:/Me,-3=Ph2,-1:/OMe, + -4=?6,2=d,4:O,-2^-35:/Me,-2^35:/Me + ) +endfont +%*********************************************************************** +beginfont("EN:Ibotenic acid") + MCf(^^18, + ?5,4=d,3:O,2:NH,1://O,4\^-24,/NH2,!,COOH + ) +endfont +%********************************************************************** +beginfont("EN:Piperine") + MCf(^^30, + Ph,-1=?5,@(1,3)O,#4\,!~dr,!,!~dr,!,//O,!,?6,1:N + ) +endfont +%*********************************************************************** +beginfont("EN:Febrifugine") + MCf(^^30, + Ph,-4=?6,2=d,@(1,3)N,4://O,#9\,!,//O,!,!~zf,?6,2:NH,-1:*/OH + ) +endfont +%*********************************************************************** +beginfont("EN:Mitomycine C") + MCf(^^30, + ?6,$(3,6)dl,@(2,5)//O,1:/Me,-4=?5,1:N,#6:/NH2,-3=?5,-2=?3,-1=wb,-2=wf,-1:NH, + #8:/*OMe^35,#9\`1^17.9,!,O,!,//O,!,NH2 + ) +endfont +%*********************************************************************** +beginfont("EN:Podophyllotoxin"); +MCf(^^0, + {,?5,@(2,5)O,-3=Ph2,-3=Ph1,-3=?5,2:O,},-1=wb,-3://O, + 10\*,Ph,@(-2,-3,-4)/OMe,#13:/*OH,@(#11~wf^-60,#12~zf^60)/H +) +endfont; +%*********************************************************************** +beginfont("EN:Warfarin"); +MCf(^^30, + Ph,3=??6,10:O,7:/OH,9://O,8\,/Ph`1,60,!,//O,! +) +endfont; +%*********************************************************************** +beginfont("EN:Genistein"); +MCf(^^30, + Ph,3=??6,10:O,@(2,6)/OH,9://O,8\,Ph,-3:/OH +) +endfont; +%*********************************************************************** +beginfont("EN:Baicalein"); +MCf(^^30, + Ph,3=??6,10:O,@(1,2,6)/OH,9://O,8\,Ph +) +endfont; +%*********************************************************************** +beginfont("EN:Baicalein"); +MCf(^^30, + Ph,3=??6,9=d,10:O,@(1,2,6)/OH,7://O,-2\,Ph + ) +endfont; +%*********************************************************************** +beginfont("EN:Reserpine"); +MCf(^^30, + {,Ph,-4=?5,3=d,-2=?6,2:N,-4=?6,-3=?6,},7:NH,10:*/H^-60, + @(15^-60,16^60)/*H, + #20*\,O,!,//O,!,Ph,@(-2,-3,-4)/OMe,@(#1,#19~zf>rl)/OMe, + #18*\,//O,!,O,! + ) +endfont; +%*********************************************************************** +beginfont("EN:Rotenone"); +MCf(^^-60, + ?5,$(-3,-2,-3,-4)??6,$(7,9,-2,-4)dl,$(3,17)dr, + @(2,13,16)O,10://O,@(11^-60,12^60)*/H, + @(-2,-3)/OMe,1*\,/Me,!~dl +) +endfont; +%*********************************************************************** +beginfont("EN:Pyrethrin I"); +MCf(^^30, + ?3,@(3^35~wf,3^-35~zf)/Me,1*\,!~dl,iPr, + 2\*,//O,!,O,-36~zb,?5,-2=d,-1:/Me,-3://O, + -2\,!4,$(-1,-3)dl +) +endfont; +%*********************************************************************** +beginfont("EN:Erythromycin"); +MCf(^^30, + {,``1,^^-120,60,60,60,-60,60,60,-60,60,60,60,-60,60,60,},&1, + 14:O,13:/*Et,@(1,9)//O,@(2,10)*/Me,@(4,6^-35,8,12^35)/*Me, + @(6^35,11,12^-35)*/OH, + #3\*,O,30,{,``.7,?6,},2:O,@(3,5^35)/Me,4:/OH,5^-35:/OMe, + #5\*^30`1.7,O,!,{,``.7,?6,},6:O,5:/Me,2:/OH,3:/NMeMe +) +endfont; +%********************************************************************** +beginfont("EN:Paclitaxel") + MCf(^^0, + {,?6,5=d,3*,{,``1,36,45,45,45,45,},&(#5),#9=?6,-4=?4,},-1=wb,-3=wf,-1:O, + @(4^35,4^-35,6)/Me,@(3^-60,15)*/OH,8:/*H^-60,9:*/Me^60,10://O, + #1\,O,!,//O,!,*/OH,!,/Ph,60~wf,NH,-60,//O,60,Ph, + #7\*,O,-45,//O,60,Ph, + #11*\,O,-60,//O,60, + #12\*^-15,O,60,//O,-60 + ) +endfont +%********************************************************************** +beginfont("EN:Mevastatin") + MCf(^^30, + ?6,2=d,4:*/H^60,,3=?6,2=d,9:*/Me, + #10*\,!,60~wb,?6,6:O,-2://O,-4:/*OH, + #5\*,O,60,//O,!,*/Me,!2 + ) +endfont +%*********************************************************************** +beginfont("EN:Sesamine") + MCf(^^54, + ?5,1=??5,@(4,7)O,@(1^-54,2^54)*/H, + #5*\^-12,Ph,-3=?5,@(-1,-3)O, + #8*\^-12,Ph,-3=?5,@(-1,-3)O + ) +endfont +%********************************************************************** +beginfont("EN:Morphine") + MCf(^^30, + {,Ph,2=?6,-4=?6,(#1,#12)=?5[2],1:O,},-1=zb, + 7*,60~wf`0.75,70~ov`1.3,45,N,/Me,&9~wb, + 15=d,6:/OH,8^180:*/H,12:/*OH + ) +endfont +%********************************************************************** +beginfont("EN:Capsaicin") + MCf(^^30, + Ph,1:/OH,6:/OMe,4\,!,NH,!,//O,!8,-3=dr,-1:/Me + ) +endfont +%*********************************************************************** +beginfont("EN:Quinine") + MCf(^^30, + {,Ph,3=Ph,},7:N,6:/OMe, + 10\,*/OH,/H~zf^-60,!, + ?6,2:N,1:*/H^60,4*\,!~dr,2*,165~zf,60,&5~zb + ) +endfont +%*********************************************************************** +beginfont("EN:Atoropin") + MCf(^^-30, + O,!,//O,!,!,Ph, + #1\~zb^-120,?7,-2*\^-170`1.2,N,/Me,&-5~wb, + #3\~wv,!,OH + ) +endfont +%*********************************************************************** +bye diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf new file mode 100644 index 00000000000..bca1f0085dd Binary files /dev/null and b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf differ diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex new file mode 100644 index 00000000000..f82dd499f38 --- /dev/null +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex @@ -0,0 +1,80 @@ +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% Molecular Coding Format file for mcf_examples.tex by A.Yamaji 2015.7 +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +\documentclass[a4paper]{article} +\usepackage{graphicx} +\pagestyle{empty} +\topmargin=-20mm +\oddsidemargin=-14mm +\textwidth=210mm +\textheight=290mm +\parindent=0mm +\setlength\columnsep{8mm} +%------------------------------------------------------------------------------- +\makeatletter% +\newbox \@stringbox% +\newcount \fontnum% +\newcount \tnum% +\newcount \Cnt@xlen% +\newcount \Cnt@row% +\newcount \fontw% +\newdimen \font@dim% +%------------------------------------------------------------------------------- +\def\mol@sel#1{% + \if#1\empty\relax\else% + \edef\@first{\expandafter\@first@param#1;}% + \edef\@second{\expandafter\@second@param#1;}% + \ifx\@first\@EN@ \edef\MOL@nameE{\@second}\fi% + \ifx\@first\@JN@ \edef\MOL@nameJ{\@second}\fi% + \ifx\@first\@NO@ \edef\MOL@number{\@second}\fi% + \ifx\@first\@CAS@ \edef\MOL@CAS{\@second}\fi% + \ifx\@first\@MW@ \edef\MOL@MW{\@second}\fi% + \ifx\@first\@FM@ \edef\MOL@fomura{\@second}\fi% + \ifx\@first\@USE@ \edef\MOL@use{\@second}\fi% + \ifx\@first\@XLogP@ \edef\MOL@XLogP{\@second}\fi% + \ifx\@first\@EXA@ \edef\MOL@extA{\@second}\fi% + \ifx\@first\@EXB@ \edef\MOL@extB{\@second}\fi% + \fi% +}% +%------------------------------------------------------------------------------- +\def\@first@param#1:#2;{#1}\def\@second@param#1:#2;{#2}% +\def\MOLinfo#1#2#3#4#5#6#7#8#9{% +\def\@EN@{EN}\def\@JN@{JN}\def\@CAS@{CAS}\def\@NO@{NO}\def\@MW@{MW}\def\@FM@{FM}% +\def\@USE@{USE}\def\@XLogP@{XLogP}\def\@EXA@{EXA}\def\@EXB@{EXB}% +\edef\MOL@nameE{}\edef\MOL@nameJ{}\edef\MOL@number{}\edef\MOL@CAS{}\edef\MOL@MW{}% +\edef\MOL@fomura{}\edef\MOL@use{}\edef\MOL@XLogP{}\edef\MOL@extA{}\edef\MOL@extB{}% +\mol@sel{#1}\mol@sel{#2}\mol@sel{#3}\mol@sel{#4}\mol@sel{#5}\mol@sel{#6}% +\mol@sel{#7}\mol@sel{#8}\mol@sel{#9}\MOLaux}% +\def\MOLaux#1#2#3{\mol@sel{#1}\mol@sel{#2}\mol@sel{#3}}% +%-------------------------------------------------------------------------------- +\def\@stru#1[#2]{\font\@strufont=#1\relax\hbox{\@strufont\char#2}}% +\def\MCFinfo#1#2#3#4#5#6#7#8#9{% + \unitlength=0.01mm\relax \@tempcnta=3200\relax \@tempcntb=3800\relax% + \begin{picture}(\@tempcntb,\@tempcnta)% + \advance\@tempcnta -300\relax% + \put(20,\@tempcnta){\tiny\bf [\the\fontnum] \MOL@nameE}% +%--------------------------------------------------------------------------- +% for METAFONT + \put( 0,0){\makebox(\@tempcntb,\@tempcnta){\@stru{#1}[#2]}}% +%%%% for METAPOST +%%%% \put( 0,0){\makebox(\@tempcntb,\@tempcnta){\includegraphics{#3}}}% +%--------------------------------------------------------------------------- + \end{picture}% + \advance\fontnum\@ne\relax\advance\tnum\@ne\relax% + \ifnum\tnum=5 \\ \tnum=0\relax \fi% + }% +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +\begin{document} +{\hspace{20mm} \LARGE\bf Molecular Coding Format examples \hspace{20mm} }% +{\footnotesize\bf by Akira Yamaji 2015.7} \vspace{5mm}\\ +\fontnum=1% +\noindent% +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%%%%%%%%% Copy & Paste here from log-file %%%%%%%%%%%%%%% +%%%%%%%%% or \input 'filename'-info.log %%%%%%%%%%%%%%% +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +%------------------------------------------------------------------------ +\input mcf_exa_soc-info.log +%------------------------------------------------------------------------ +\end{document} +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc-030.eps b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc-030.eps new file mode 100644 index 00000000000..566a268d63e --- /dev/null +++ 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+47.18906 26.07932 lineto + closepath fill +newpath 52.85834 24.37854 moveto +58.52762 27.21318 lineto +52.85834 30.04782 lineto + closepath fill +showpage +%%EOF diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf new file mode 100644 index 00000000000..27e88b9ee1f --- /dev/null +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf @@ -0,0 +1,262 @@ +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% Molecular Coding Format file for mcf_manual.tex by Akira.Yamaji 2015.2 +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +input mcf2graph.mf; +%----------------------------------------------------------------------- +font_wd#:=60mm#;% font width +font_ht#:=30mm#;% font height +max_bond_width:=0.18; +%----------------------------------------------------------------------- +sw_logout:=1; +sw_frame:=0; +sw_expand:=0; +sw_start_vector:=0; +%%%%%sw_checklist:=1; +%*********************************************************************** +beginfont("EN:Chain") +sw_numberB:=1; + ratio_cr:=1; + sw_start_vector:=1; + MCf(^^30,-60,60,-60,60,-60,60) +endfont +%*********************************************************************** +beginfont("EN:Chain") + sw_numberB:=1; + ratio_cr:=1; + sw_start_vector:=1; + MCf(^^30,!,!,!,!,!,!) +endfont +%*********************************************************************** +beginfont("EN:ring") + sw_numberB:=1; + sw_start_vector:=1; + MCf(?6) +endfont +%*********************************************************************** +beginfont("EN:rotate 1") + sw_start_vector:=1; + MCf(^^30,!4,^^30,?6) +endfont +%*********************************************************************** +beginfont("EN:change bond 1") + ratio_cr:=1; + MCf(^^30,!~dm,!~dl,!~dr,!~wf,!~wb,!~zf,!~zb) +endfont +%*********************************************************************** +beginfont("EN:change bond 2") + ratio_cr:=1; + MCf(^^30,!9,1=vf,2=vb,3=tm,4=dt,5=wv,@(7~bd^-45`2,9~ov^45`2)/Me) +endfont +%*********************************************************************** +beginfont("EN:change bond length") + sw_start_vector:=1; + sw_numberB:=1; + MCf(^^30,!3,!`1.2,!2) +endfont +%*********************************************************************** +beginfont("EN:change bond length") + sw_start_vector:=1; + sw_numberB:=1; + MCf(^^30,!3,``1.2,!3) +endfont +%*********************************************************************** +beginfont("EN:change atom 1") + sw_start_vector:=1; + MCf(^^30,!2,O,!2) +endfont +%*********************************************************************** +beginfont("EN:change atom 2") + sw_start_vector:=1; + MCf(^^30,!6,2:O,@(3,5)N) +endfont +%*********************************************************************** +beginfont("EN:change atom 3") + sw_start_vector:=1; + MCf(?6,4\,?6,2:N) +endfont +%*********************************************************************** +beginfont("EN:change atom 4") + sw_start_vector:=1; + MCf(?6,4\,??6,2:N) +endfont +%*********************************************************************** +beginfont("EN:change atom 5") + sw_start_vector:=1; + MCf(?6,4\,?6,#2:N) +endfont +%*********************************************************************** +beginfont("EN:change atom 6") + sw_start_vector:=1; + MCf(?6,4\,?6,-2:N) +endfont +%*********************************************************************** +beginfont("EN:fused ring 1") + sw_start_vector:=1; + sw_numberB:=1; + MCf(^^30,?6,$(3,3,3)?6) +endfont +%*********************************************************************** +beginfont("EN:fused ring 2") + sw_start_vector:=1; + sw_numberB:=1; + MCf(^^30,?6,$(3,9,14)??6) +endfont +%*********************************************************************** +beginfont("EN:fused ring 3") + sw_start_vector:=1; + sw_numberB:=1; + MCf(^^30,?6,$(3,9)??6,(11,4)=??6[4],(16,17)=??6[3],(20,5)=??4[2]) +endfont +%*********************************************************************** +beginfont("EN:fused ring 4") + sw_start_vector:=1; + sw_numberB:=1; + MCf(^^30,?6,$(3,9)??6,(11,4)=??6[4],(20,5)=??5[3],(16,17)=??5[2]) +endfont +%*********************************************************************** +beginfont("EN:Spiro ring ") + sw_start_vector:=1; + ratio_cr:=1; + MCf(^^30,!6,4*,?5) +endfont +%*********************************************************************** +beginfont("EN:branch") + sw_numberB:=1; + sw_start_vector:=1; + MCf(^^30,!3,/!2,!3) +endfont +%*********************************************************************** +beginfont("EN:branch") + sw_numberB:=1; + sw_start_vector:=1; + MCf(^^30,!6,4\,!2) +endfont +%*********************************************************************** +beginfont("EN:substituent 1") + sw_start_vector:=1; + MCf(^^30,!,//O,!,/*H,!,*/H,!,/?3,!,**?3,!) +endfont +%*********************************************************************** +beginfont("EN:substituent 2") + sw_start_vector:=1; + MCf(^^30,!,/Me,!,/Et,!3,/Pr,!,/iPr,!3,/tBu,!) +endfont +%*********************************************************************** +beginfont("EN:substituent 3") + sw_start_vector:=1; + MCf(^^30,!10,2:/Me,3:/Et,6:/Pr,7:/iPr,10:/tBu) +endfont +%*********************************************************************** +beginfont("EN:substituent 4") + sw_start_vector:=1; + MCf(^^30,?6,@(3`2^30,3~wf,4~zf,6~wf^-30,6~zf^30)/H) +endfont +%*********************************************************************** +beginfont("EN:substituent 5") + sw_start_vector:=1; + MCf(^^30,{,``1,!7,},@(2,3)/*Me`2^30,5:*/Pr>lr,7:*/Pr>rl +) +endfont +%*********************************************************************** +beginfont("EN:change atom and substituent") + sw_start_vector:=1; + MCf(^^30,!3,NH,!,SOO,!3) +endfont +%*********************************************************************** +beginfont("EN:chain strech direction mode 1") + MCf( + ?4,@(3^-90,3^-30,3^90)/'(!3,"{>hz}")>hz, + @(1^-60,1`1.5,1^60)/'(!2,"{>vt}")>vt + ) +endfont +%*********************************************************************** +beginfont("EN:chain strech direction mode 2") + MCf( + ^^30,!6,@(3^-30,3,3^30)/'(!,!,!,"{>lr}")>lr, + @(5^-30,5,5^30)/'(!,!,!,"{>rl}")>rl + ) +endfont +%*********************************************************************** +beginfont("EN:chain strech direction mode 3") + sw_start_vector:=1; + MCf(^^-30,!6,@(6>45)/'(!3,"{>45}"), + @(3>'(90,-90,90))/'(!,!,!,"{>'(90,-90,90)}") + ) +endfont +%*********************************************************************** +beginfont("EN:Change color") + sw_start_vector:=1; + MCf(^^30,?6,@(2,5)N,2:red,5:green,3=red) +endfont +%*********************************************************************** +beginfont("EN:Chain start multi characters") +% sw_start_vector:=1; + MCf(^^30,COOH,!0,!,/OH^-30,/COOH^30,!2,COOH) +endfont +%*********************************************************************** +beginfont("EN:User definition") + sw_start_vector:=1; + iBuOH:='(!,/Me,!,OH); + MCf(^^30,?6,@(4,6)/iBuOH) +endfont +%*********************************************************************** +beginfont("EN:Inline definition") + sw_start_vector:=1; + MCf(^^30,!3,/'(!,/Me,!,OH),!3) +endfont +%*********************************************************************** +beginfont("EN:Switwch start vector") + sw_start_vector:=0; + MCd(.7,.7)( 0, 0)(^^30,Ph,4:/Cl,3:/F) + sw_start_vector:=1; + MCd(.7,.7)( 1, 1)(^^30,Ph,4:/Cl,3:/F) +endfont +%*********************************************************************** +beginfont("EN:Switwch numberingA") + sw_numberA:=1; + sw_start_vector:=1; + MCf(^^30,?6,-4=?6,-3\,!,?6,#10:/Et) +endfont +%*********************************************************************** +beginfont("EN:Switwch numberingB") + sw_numberB:=1; + sw_start_vector:=1; + MCf(^^30,?6,-4=?6,-3\,!,?6,#10:/Et) +endfont +%*********************************************************************** +beginfont("EN:Switwch Frame") + MCd(.7,.7)( 0, 0)(^^30,Ph,4:/Cl,3:/F) + sw_frame:=1; + MCd(.7,.7)( 1, 1)(^^30,Ph,4:/Cl,3:/F) +endfont +%*********************************************************************** +beginfont("EN:Switwch Solid ratio") + MCd(.7,.7)( 0, 0)(^^30,Ph,4:/Cl,3:/F) + sw_solid:=1; ratio_bond_width:=0.08; + MCd(.7,.7)( 1, 1)(^^30,Ph,4:/Cl,3:/F) +endfont +%*********************************************************************** +beginfont("EN:Switwch Expand") + MCd(.6,.6)(0, 0)(^^30,Ph,4:/COOH,3:/NH2) + sw_expand:=1; + MCd(.6,.6)(1, 1)(^^30,Ph,4:/COOH,3:/NH2) +endfont +%*********************************************************************** +beginfont("EN:Ampicillin") + MCf(^^45, + ?4,2:N,2=??5,-1:S, + @(3^45,4^-45)/*H,1://O^15,5:/*COOH^-18,@(6^35,6^-35)/Me, + 4\^75,NH,!,//O,!,NH,!,Ph + ) +endfont +%*********************************************************************** +beginfont("EN:Cholesterol","MW:386.65") + MCf( + ^^30,?6,$(-4,-2)??6,-4=??5,7=dl, + 1:*/OH,@(4,12)*/Me^60,9:*/H^60, + 10:/*H^180,@(11,-1)/*H^-60, + -1\^17,/*Me,!4,/Me,!, + ) +endfont +%*********************************************************************** +bye diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf new file mode 100644 index 00000000000..6468b687ad7 Binary files /dev/null and b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf differ diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex new file mode 100644 index 00000000000..2b0c4e507c6 --- /dev/null +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex @@ -0,0 +1,572 @@ +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% Molecular Coding Format manual by Akira Yamaji 2015.7 +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +\documentclass[a4paper]{article} +\usepackage{graphicx} +\pagestyle{empty} +\topmargin=-17mm +\textheight=27.5cm +\textwidth=18cm +\oddsidemargin=-9mm +\parindent=0mm +\unitlength=1mm% +\makeatletter +%---------------------------------------------------------------------------- +\newcount \fontnum% +\newcount \tempnum% +\fontnum=0% +\tempnum=1% +%---------------------------------------------------------------------------- +\font\@strufont=mcf_man_soc\relax% +%---------------------------------------------------------------------------- +\def\MCFtitle#1{\framebox{\bf No.\the\tempnum}\hspace{2mm}#1} +%---------------------------------------------------------------------------- +\def\MCFstructure{% + \makebox(75,0)[t]{\frame{\makebox(70,35){\@strufont\char\fontnum}}} + \advance\fontnum\@ne\relax\advance\tempnum\@ne\relax% +}% +%---------------------------------------------------------------------------- +\def\MCFstructureEPS{% + \makebox(75,0)[t]% + {\frame{\makebox(70,35){% + \ifnum\fontnum<10\includegraphics{mcf_man_soc-00\the\fontnum}% + \else\ifnum\fontnum<100\includegraphics{mcf_man_soc-0\the\fontnum}\fi\fi}}}% + \advance\fontnum\@ne\relax\advance\tempnum\@ne\relax% +}% +%---------------------------------------------------------------------------- +\begin{document} +\noindent% +\begin{picture}(180,0) + \put(50,12){{\LARGE Molecular coding format manual}\hspace{20mm} + by Akira Yamaji 2015.7} +\end{picture}\vspace{-6mm}\\ +%---------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Chain (1)} +\begin{verbatim} +plus(+):anticlockwize,minus(-)clockwize +bold arrow is default angle and position + + ^^30,-60,60,-60,60,-60,60 +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%1---------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Chain (2)} +\begin{verbatim} +!,!!: take 60 or -60 depend on + current angle and enviroment + + !6 (!!6) + + ** !!6: !,!,!,!,!,! + !6: {,!!6,} +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Ring} +\begin{verbatim} +six membered ring + + ?6 (??6) + + ** ??6 :^^-120,60,60,60,60,60,&(-5) + ?6 : {,??6,} + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{rotate} +\begin{verbatim} +^^angle:rotate current angle + + ^^30,!4,^^30,?6 +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change bond (1)} +\begin{verbatim} +~bond change bond + dm:double,dl:double(left),dr:double(right), + wf:wedge forward,wb:wedge backward, + zf:wedge dotted,zb:wedge dotted backward + + ^^30,!~dm,!~dl,!~dr,!~wf,!~wb,!~zf,!~zb +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change bond (2)} +\begin{verbatim} + Bn=bond : change bond + dm:double,dl:double(left),dr:double(right), + wf:wedge forward,wb:wedge backward, + zf:wedge dotted,zb:wedge dotted backward + + ^^30,!9,1=vf,2=vb,3=tm,4=dt,5=wv, + @(7~bd^-45`2,9~ov^45`2)/Me +\end{verbatim} +\end{minipage} +\MCFstructure +\newpage +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change bond length (1)} +\begin{verbatim} +B`length : change bond length of B + + ^^30,!3,!`1.2,!2 +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change bond length (2)} +\begin{verbatim} +``length : change all bond length after + + ^^30,!3,``1.2,!3 +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change atom (1)} +\begin{verbatim} +Insert hetero atom + + ^^30,!2,O,!2 +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change atom (2)} +\begin{verbatim} +2:O : change A2 C to O +@(3,5)N : change A3,A5 C to N + + ^^30,!6,2:O,@(3,5)N +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change atom (3)} +\begin{verbatim} +2:N : change A2(brock ahead) C to N + + ?6,4\,?6,2:N +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change atom (4)} +\begin{verbatim} +2:N : change A2(brock ahead) C to N +??6 is not brock + ?6,4\,??6,2:N + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change atom (5)} +\begin{verbatim} +#2:N : change A#2 C to N + + ?6,4\,?6,#2:N +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change atom (6)} +\begin{verbatim} +-2:N : change A(-2) C to N + + ?6,4\,?6,-2:N +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Fused ring (1)} +\begin{verbatim} + + ?6,$(3,3,3)??6 NG + ?6,$(3,9,14)??6 OK + ?6,$(-4,-3,-3)??6 OK + ?6,$(#3,#9,#14)??6 OK + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Fused ring (2)} +\begin{verbatim} + + ?6,$(3,3,3)?6 OK + ?6,$(3,9,14)?6 NG + ?6,$(-4,-3,-3)?6 OK + ?6,$(#3,#9,#14)?6 OK + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Fused ring (3)} +\begin{verbatim} +(4,11)=??6[4] : fuse 4/6 ring to B4 ..B11 +(16,17)=??6[3] : fuse 3/6 ring to B16..B17 +(20,5)=??4[2] : fuse 2/4 ring to B20.. B5 + + ^^30,?6,$(3,9)??6,(4,11)=??6[4], + (16,17)=??6[3],(20,5)=??4[2] + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Fused ring (4)} +\begin{verbatim} +(20,5)=??5[3] : fuse 3/5 ring to B20..B5 +(16,17)=??5[2] : fuse 2/5 ring to B16..B17 + + ^^30,?6,$(3,9)??6,(4,11)=??6[4], + (20,5)=??5[3],(16,17)=??5[2] +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Spiro ring} +\begin{verbatim} +4*,?5 : add ?5(5 membered ring) to A4 + + ^^30,!6,4*,?5 +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Branch (1)} +\begin{verbatim} +/ : branch bond +/ : process at last + + ^^30,!3,/!2,!3 +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Branch (2)} +\begin{verbatim} +4\ : branch bond at A4 + + ^^30,!6,4\,!2 +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Substituent (1)} +\begin{verbatim} +/ : single // : double +*/ : wedge forward /* : wedge backward +** : direct + + ^^30,!,//O,!,/*H,!,*/H,!,/?3,!,**?3,! +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Substituent (2)} +\begin{verbatim} +Insert substituent + + ^^30,!,/Me,!,/Et,!3,/Pr,!,/iPr,!3,/tBu,! +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Substituent (3)} +\begin{verbatim} +Add substituent + + ^^30,!10,2:/Me,3:/Et,6:/Pr,7:/iPr,10:/tBu + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Substituent (4)} +\begin{verbatim} +~,^,`,> : change type,angle,length,enviroment + of substituent + + ^^30,?6, + @(3`2^30,3~wf,4~zf,6~wf^-30,6~zf^30)/H +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Substituent (5)} +\begin{verbatim} +~,^,`,> : change type,angle,length,enviroment + of substituent + + ^^30,{,``1,!7,}, + @(2,3)/*Me`2^30,5:*/Pr>lr,7:*/Pr>rl + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change atom and Substituent} +\begin{verbatim} +NH,SOO : inset hetero atom and substituent + simultaneously + + ^^30,!3,NH,!,SOO,!3 + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Chain strech direction environment (1)} +\begin{verbatim} +>hz : horizontal enviroment (default) +>vt : vertical enviroment + + ?4, + @(3^-90,3^-30,3^90)/'(!3,"{>hz}")>hz, + @(1^-60,1`1.5,1^60)/'(!2,"{>vt}")>vt + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Chain strech direction environment (2)} +\begin{verbatim} +>lr : left-right enviroment +>rl : right-left enviroment + + ^^30,!6, + @(3^-30,3,3^30)/'(!3,"{>lr}")>lr, + @(5^-30,5,5^30)/'(!3,"{>rl}")>rl + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Chain strech direction environment (3)} +\begin{verbatim} +>45 : fixed angle enviroment +>'(-90,90,-90) : multi angle enviroment + + ^^-30,!6,@(2>45)/'(!3,"{>45}"), + @(6>'(-90,90,-90))/'(!2,"{>(-90,90,-90)}") +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Change color} +\begin{verbatim} +@(5)green : change color of A5 green +$(3)red : change color of B3 red + + ^^30,?6,@(2,5)N, + 2:red,5:green,3=red + +\end{verbatim} +\end{minipage} +\MCFstructureEPS +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Chain start multiple characters} +\begin{verbatim} +Use !0 instead of !, +if begin with multi charactor string + + ^^30,COOH,!0,!,/OH^-30,/COOH^30,!2,COOH +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{User definition} +\begin{verbatim} +iBuOH : user defined substructure + + iBuOH:='(!,/Me,!,OH) + MCf(^^30,?6,@(4,6)/iBuOH) + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Inline definition} +\begin{verbatim} +Insert user defined substructure + + ^^30,!3,/'(!,/Me,!,OH),!3 + +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Switch Start Vector} +\begin{verbatim} + + MCd(.8,.8)( 0, 0)(^^30,Ph,4:/Cl,3:/F) + sw_start_vector:=1; + MCd(.8,.8)( 1, 1)(^^30,Ph,4:/Cl,3:/F) +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Switch NumberingA} +\begin{verbatim} + + sw_numberA:=1; + MCf(^^30, + Ph,-4=Ph1,-3\,!,Ph,10:/Et) +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Switch NumberingB} +\begin{verbatim} + + sw_numberB:=1; + MCf(^^30, + Ph,-4=Ph1,-3\,!,Ph,10:/Et) +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Switch Frame} +\begin{verbatim} + + MCd(.8,.8)(0,0)(^^30,Ph,4:/Cl,3:/F) + sw_frame:=1; + MCd(.8,.8)(1,1)(^^30,Ph,4:/Cl,3:/F) +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Switch Solid ratio} +\begin{verbatim} + + MCd(.8,.8)( 0, 0)(^^30,Ph,4:/Cl,3:/F) + sw_solid:=1; ratio_bond_width:=0.08; + MCd(.8,.8)( 1, 1)(^^30,Ph,4:/Cl,3:/F) +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Switch Expand} +\begin{verbatim} + + MCd(.6,.6)(0,0)(^^30,Ph,4:/COOH,3:/NH2) + sw_expand:=1; + MCd(.6,.6)(1,1)(^^30,Ph,4:/COOH,3:/NH2) +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Example(1) Ampicillin} +\begin{verbatim} + ^^45,?4,2:N,2=??5,-1:S, + @(3^45,4^-45)/*H,1://O^15, + 5:/*COOH^-18,@(6^35,6^-35)/Me, + 4\^75,NH,!,//O,!,NH,!,Ph +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\begin{minipage}[t][38mm]{100mm} +\MCFtitle{Example(2) Cholesterol} +\begin{verbatim} + ^^30,?6,$(-4,-2)??6,-4=??5,7=dl, + 1:*/OH,@(4,12)*/Me^60,9:*/H^60, + 10:/*H^180,@(11,-1)/*H^-60, + -1\^17,/*Me,!4,/Me,!, +\end{verbatim} +\end{minipage} +\MCFstructure +\vspace{6mm}\\ +%----------------------------------------------------------------------------- +\end{document} diff --git a/Master/texmf-dist/metapost/mcf2graph/mcf2graph.mf b/Master/texmf-dist/metapost/mcf2graph/mcf2graph.mf new file mode 100644 index 00000000000..bd05e6e2a1d --- /dev/null +++ b/Master/texmf-dist/metapost/mcf2graph/mcf2graph.mf @@ -0,0 +1,764 @@ +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% mcf2graph ver 3.50 Copyright (c) 2013,2014,2015 Akira Yamaji +% +% Permission is hereby granted, free of charge, to any person obtaining a copy of this software +% and associated documentation files (the "Software"), to deal in the Software without restriction, +% including without limitation the rights to use, copy, modify, merge, publish, distribute, +% sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is +% furnished to do so, subject to the following conditions: +% +% The above copyright notice and this permission notice shall be included in all copies +% or substantial portions of the Software. +% +% THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,EXPRESS OR IMPLIED, +% INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,FITNESS FOR A PARTICULAR PURPOSE +% AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, +% DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +% OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% mcf2graph is METAFONT/METAPOST macro package convert +% Molecular Coding Format(MCF) to font/eps/sgv/png/mdl molfile(V2000) +%--------------------------------------------------------------------------------------------- +% Web page of author: http://molecoding.cocolog-nifty.com/blog/ +% Suggestion or request mail to: akira.yamaji5@gmail.com +%--------------------------------------------------------------------------------------------- +% Set outputformat to "png" : mpost -s ahangle=1 FILENAME +% Set outputformat to "svg" : mpost -s ahangle=2 FILENAME +% Set outputformat to MDL Molfile : mpost -s ahangle=3 FILENAME +% Set output no image file : mpost -s ahangle=0 FILENAME +% Set first font only (for test) : mpost -s ahlength=1 FILENAME +% Set output checklist : mpost -s ahlength=2 FILENAME +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +tracingstats:=1; +message " This is mcf2graph ver 3.5 2015.7 "; +newinternal com,par,cntA,cntB,adrS,adrA,adrB,dx,nX,i,u,j,k,v,xp,yp,nA,nB; +%------------------------------------------------------------------------------------------------- +pair posB[],posA[],pairT,Ls,Le,pairA; +numeric angB[],angA[],br_ang[],sB[],eB[],f_FON[],atom_w[],atom_h[],atom_d[],strA[],stkB[], + stkA[],stkL[],stkM[],strW[],lineB[],lenB[],ps_com[],ps_adr[],ps_len[],ps_rot[], + ps_env[],comMC[][],parMC[][],stock_p[],cntMC[],colorA[],colorB[],tblN[],tblB[][], + wtA[],sumA[],CH[],NH[],NO[],SO[],CCl[],CF[],CBr[],?[],??[],![],!![],Ph[],ph[]; +path pA,pB,pC,pT; +string info[],tblA[],com_str[],fomula_str,mp_log_name,mol_name; +picture atom_font[],chem_structure,temp_picture; +%------------------------------------------------------------------------------------------------- +sw_numberA:=sw_numberB:=sw_frame:=sw_logout:=sw_solid:=sw_expand:=sw_start_vector:=0; +sw_atom_frame:=sw_checklist:=sw_MOLfile:=char_num:=str_cnt:=size_changed:=proc_end:=0; +if known outputtemplate: + f_MP:=1; + if known SAVfile: % for MePoTeX + mp_log_name:="@MCF_INFO.log"; outputtemplate:="%j.%c."; + def beginchar(text s)= enddef; def endchar = enddef; sw_logout:=1; + else: % for METAPOST + mp_log_name:=jobname&"-info.log"; + if ahlength=1: proc_end:=1; fi % first molecular only + if ahlength=2: sw_checklist:=1; def shipit = enddef; fi % checklist on + if ahangle=0: def shipit = enddef; % No image file + elseif ahangle=1: outputformat:="png"; hppp:=vppp:=0.1; % PNG format + elseif ahangle=2: outputformat:="svg"; % SVG format + elseif ahangle=3: sw_MOLfile:=1; def shipit = enddef; % MDL Molefile on + fi + outputtemplate:="%j-%3c."&outputformat; + def beginchar(text s)= beginfig(char_num) enddef; def endchar = endfig enddef; + fi + vardef mp_filename = jobname&"-"&fit_zero(char_num)&decimal(char_num)&"."&outputformat enddef; + def printf expr s= write s to mp_log_name enddef; + ahangle:=45; ahlength:=4; def # = enddef; color color_list[]; + def Cp(expr s) = if known s: if s<>0: withcolor color_list[s] fi fi enddef; + def define_pixels(text s) = enddef; +else: f_MP:=0; def Cp(expr s) = enddef; def color = transform enddef; + mode_setup; def printf expr s= message s enddef; def mp_filename= "" enddef; fi +clearit; chem_structure:=currentpicture; +%------------------------------------------------------------------------------------------------- +let DIV= /; let MUL= *; let LT= <; let GT= >; let AND= &; let :: = : ; let == = =; +?3:=?20:=??3:=??20:=Ph:=Ph1:=Ph2:=ph:=ph1:=ph2:=hz:=0; vt:=1; +first_def_number:=500; user_def_number:=2500; ab_def_number:=3000; unit_e:=1/2048; +lr_margin:=tb_margin:=0.4mm; ratio_cr:=-0.66; ratio_atom_bond:=0.33; +ratio_thickness_bond:=0.015; offset_atom#:=0.7pt#; max_bond_width:=0.15; +ratio_pen_wd:=1.4; ratio_bondgap_bond:=0.15; ratio_zebra_gap:=0.12; +ratio_zebra_black:=0.4; ratio_wedge_bond:=0.15; font_gap:=.066; +offset_thick#:=0.2pt#; offset_gap#:=0.3pt#; offset_zebra_gap#:=0.1pt#; +par_s=ASCII("{"); par_e=ASCII("}"); score_u=ASCII("_"); hat=ASCII("^"); +for i:=1 upto 16: info[i]:=":"; endfor +def def_com(expr n)(text tx)= nA:=n; forsuffixes list=tx:: list:=nA; nA:=nA+1; endfor enddef; +def_com(-4000)(_term,_jp_atom,_jp_atom_abs,_jp_bond,_cyc,_cyc_sB,_cyc_eB,_set_line,_chg_line, + _dl,_tmp_line,_chg_len,_get_len,_ring_len,_tmp_len,_rot_ang,_set_ang,_adj_ang,_chg_env, + _tmp_env,_set_colorA,_set_colorB,_postA,_postB,_postC,_postD,_postE,_postF,_set_psA, + _set_clr,_set_adr,_mk_bond,_set_atom,_arg_ang,_chg_atom,_tmp_rot,_fuse,_push,_pop,_size_a); +def_com(1)(si,dl,dr,dm,tm,wf,wb,bd,zf,zb,ov,dt,no,ar,vf,vb,wv,nl); +%------------------------------------------------------------------------------------------------- +def parameter_list= sw_checklist,sw_numberA,sw_numberB,sw_frame,sw_logout,sw_solid,sw_expand, + sw_MOLfile,sw_start_vector,sw_atom_frame,lr_margin,tb_margin,ratio_atom_bond,ratio_thickness_bond, + ratio_cr,offset_atom,max_bond_width,ratio_pen_wd,ratio_bondgap_bond,ratio_zebra_black, + ratio_zebra_gap,ratio_wedge_bond,font_gap,offset_zebra_gap,offset_gap,offset_thick +enddef; +%------------------------------------------------------------------------------------------------- +nA:=0; for list=parameter_list: st_p[incr nA]:=list; endfor +def store_par(text t)= nA:=0; for list=t: if st_p[incr nA]<>list: st_p[nA]:=list; fi endfor enddef; +def restore_par(text t)= nA:=0; + forsuffixes list=t: if list<>st_p[incr nA]: list:=st_p[nA]; fi endfor enddef; +%------------------------------------------------------------------------------------------------- +def beginfont(text s)= mol_name:=""; len_x:=len_y:=cntA:=0; + store_par(parameter_list); ratio_bond_width:=1mm#/font_wd#; + for i:=1 upto 12: if info[i]<>":": info[i]:=":"; fi endfor + for list=s: cntA:=cntA+1; info[cntA]:=list; + if substring (0,2) of list="EN": + mol_name:=substring (3,length(list)) of list; fi exitif cntA=11; endfor + ratio_hw:=font_ht#/font_wd#; + if f_MP=0: + if mode=proof: + if font_wd#>=font_ht#: + if font_wd#>35mm#:font_wd#:=35mm#;font_ht#:=ratio_hw*35mm#; fi + else: if font_ht#>35mm#:font_ht#:=35mm#;font_wd#:=35mm#/ratio_hw; fi fi fi fi + beginchar(char_num,font_wd#,font_ht#,0); clearit; +enddef; +%------------------------------------------------------------------------------------------------- +def endfont= + if sw_frame=1: AUX(draw_frame(len_x,len_y,(min_x,min_y),0.2pt);) fi + if sw_start_vector=1: AUX(start_vector) fi if sw_logout=1: logfile_out; fi + if sw_checklist=1: mol_check; checklist_out; fi if sw_MOLfile=1: mol_check; MOL_out; fi + char_num:=char_num+1; currentpicture:=chem_structure; chem_structure:=nullpicture; + restore_par(parameter_list); + if size_changed=1: font_wd#:=stock_wd#; font_ht#:=stock_ht#; size_changed:=0; fi + endchar; + if proc_end=1: scantokens("bye"); fi +enddef; +%------------------------------------------------------------------------------------------------- +def size_setup= BL# := font_wd#*ratio_bond_width; + wedge_wd# := ratio_wedge_bond*BL#; + zebra_gap# := ratio_zebra_gap*BL#+offset_zebra_gap#; + AL# := ratio_atom_bond*BL#+offset_atom#; + gap# := ratio_bondgap_bond*BL#+offset_gap#; + pen_wd# := ratio_thickness_bond*BL#+offset_thick#; + Apen_wd# := ratio_pen_wd*pen_wd#; + define_pixels(BL,zebra_gap,wedge_wd,AL,gap,pen_wd,Apen_wd,font_wd,font_ht); + font_size_setup; +enddef; +%------------------------------------------------------------------------------------------------- +def scaling= min_x:=min_y:= 4095.999; max_x:=max_y:=-4095.999; +for i=1 upto cntA: xpos:=xpart(posA[i]); ypos:=ypart(posA[i]); + if strA[i]<>0: str_len:=nC:=num_d:=0; + for j=0 upto length(com_str[strA[i]])-1: nA:=ASCII(pic_c(j,com_str[strA[i]])); + if (nA=score_u)or(nA=hat)or(nA=par_s)or(nA=par_e): + if (nA=hat)and(nC<.5AL): nC:=.5AL; fi; + if (nA=score_u)and(num_d<.5AL): num_d:=.5AL; fi; + else: str_len:=str_len+atom_w[nA]; fi + endfor + str_ang:=(br_ang[i] mod 360); num_f:=str_len; + if (str_ang<=91)or(str_ang>=269): num_f:=0; else: str_len:=0; fi + if (xpos-num_f+.5AL)max_x: max_x:=xpos+str_len-.5AL; fi + if (ypos-num_d-.5AL)max_y: max_y:=ypos+nC+.5AL; fi + else: if xposmax_x: max_x:=xpos; fi + if yposmax_y: max_y:=ypos; fi fi + endfor + len_x:=max_x-min_x; len_y:=max_y-min_y; +enddef; +%------------------------------------------------------------------------------------------------- +def resize(expr WD,HT)= + if (len_y/len_x)>ratio_hw: factor:=(font_ht*HT-2tb_margin)/len_y; + else: factor:=(font_wd*WD-2lr_margin)/len_x; fi + ratio_bond_width:=ratio_bond_width*factor; len_x:=len_x*factor; len_y:=len_y*factor; +enddef; +%------------------------------------------------------------------------------------------------- +for i=1 upto 128: f_FON[i]=0; endfor asc0:=ASCII("0"); asc9:=ASCII("9"); +def font_use_check= + for i=1 upto 128: if f_FON[i]<>0: f_FON[i]:=0; fi endfor + if (sw_numberA=1)or(sw_numberB=1): for j=asc0 upto asc9: f_FON[j]:=1; endfor + else: for i=1 upto cntA: if strA[i]<>0: for j=0 upto length(com_str[strA[i]])-1: + f_FON[ASCII(pic_c(j,com_str[strA[i]]))]:=1; endfor fi endfor fi +enddef; +%------------------------------------------------------------------------------------------------- +vardef '(text s)= ''(incr mc_num)(s); mc_num enddef; +def set_def_MC= + save /,*,//,/*,*/,**,~,^,`,{,},<,>,&,:,=,\,\\,*\,\*,@,$,#,##,d,w,z,inside_def_MC; + inside_def_MC:=1; d:=dl; w:=wf; z:=zf; + vardef $(text a)tertiary b == $$(a)(b) enddef; vardef @(text a)tertiary b == @@(a)(b) enddef; + vardef #primary n == n MUL unit_e enddef; vardef ##primary n == -n MUL unit_e enddef; + tertiarydef a^b == (_tmp_rot,b),a enddef; tertiarydef a`b == (_tmp_len,b),a enddef; + tertiarydef a>b == (_tmp_env,b),a enddef; tertiarydef a~b == (_tmp_line,b),a enddef; + tertiarydef a=b == $$(a)(b) enddef; tertiarydef a:b == @@(a)(b) enddef; + def &primary n ==(_cyc,n) enddef; def /primary n ==(_postA,n) enddef; + def * == (0,1) enddef; def \ == *,0 enddef; def \\ == *,0~dm enddef; + def *\ == (0,1),0~wf enddef; def \* == (0,1),0~zf enddef; + def { == (_push,1) enddef; def } == (_pop,1) enddef; + def {{ == (_push,0) enddef; def }} == (_pop,0) enddef; + def >>primary n == (_chg_env,n) enddef; def ``primary n == (_chg_len,n) enddef; + def ^^primary n == (_rot_ang,n) enddef; def ~~primary n == (_chg_line,n) enddef; + def /secondary n == (_postA,n) enddef; def //secondary n == (_postB,n) enddef; + def */secondary n == (_postC,n) enddef; def /*secondary n == (_postD,n) enddef; + def **secondary n == (_postE,n) enddef; def */*secondary n == (_postF,n) enddef; +enddef; +%------------------------------------------------------------------------------------------------- +def PM(expr a,b,c)= comMC[a][incr cntMC[a]]:=b; parMC[a][cntMC[a]]:=c; enddef; +def ''(expr k)(text s)= begingroup + if unknown inside_def_MC:: set_def_MC fi cntMC[k]:=0; + for list==s:: + if known list:: + if pair list:: PM(k,xpart(list),ypart(list)) + elseif numeric list:: + if list>=first_def_number:: + for i==1 upto cntMC[list]:: PM(k,comMC[list][i],parMC[list][i]) endfor + else:: PM(k,_mk_bond,list) fi + elseif string list:: com_str[incr str_cnt]:=list; PM(k,_set_atom,str_cnt) + if pic_c(0,list)=="{":: strW[str_cnt]:=1.7; else:: strW[str_cnt]:=1; fi fi fi + endfor + endgroup +enddef; +%------------------------------------------------------------------------------------------------- +def !?(expr a)(expr b)(expr c) = PB(_jp_bond,a) PB(_get_len,a) PB(_push,c) + PB(_chg_len,_ring_len) for i==1 upto b-2:: PB(_mk_bond,360 DIV b) endfor PB(_pop,c) + if a>=1:: PB(_cyc_eB,0) elseif a<=0:: PB(_cyc_eB,a-b+2) else:: PB(_cyc_eB,a) fi +enddef; +%------------------------------------------------------------------------------------------------- +def !!?(expr a)(expr b)(expr c)(expr n) = PB(_jp_bond,xpart(a)) PB(_push,n) + if b==6:: PB(_chg_len,0) for i==1 upto c-1:: PB(_mk_bond,60) endfor + elseif b==5:: if c==2:: PB(_chg_len,1.25) PB(_mk_bond,80) + elseif c==3:: PB(_chg_len,1.1) PB(_mk_bond,78) PB(_mk_bond,72) fi + elseif b==4:: PB(_chg_len,1.225) PB(_mk_bond,105) fi + PB(_pop,n) if ypart(a)<=0:: PB(_cyc_eB,ypart(a)-c+1) else:: PB(_cyc_eB,ypart(a)) fi +enddef; +%------------------------------------------------------------------------------------------------- +def PB(expr b,c)= comMC[ab_num][incr cntBS]:=b; parMC[ab_num][cntBS]:=c; enddef; +def $$(text t)(expr e) = begingroup save cntBS; cntBS:=0; ab_num:=ab_num+1; + if known e:: if numeric e:: + if (e>=si)and(e<=nl):: if e==dl:: for list==t:: PB(_dl,list) endfor + else:: for list==t:: PB(_set_adr,list) PB(_set_line,e) endfor fi + elseif (e>=?3)and(e<=?20):: for list==t:: !?(list)(e-?3+3)(1) endfor + elseif (e>=??3)and(e<=??20):: for list==t:: !?(list)(e-??3+3)(0) endfor + elseif e==Ph1:: !?(t)(6)(1) PB(_dl,-2) PB(_dl,-4) + elseif e==Ph2:: !?(t)(6)(1) PB(_dl,-1) PB(_dl,-3) PB(_dl,-5) + elseif e==ph1:: !?(t)(6)(0) PB(_dl,-2) PB(_dl,-4) + elseif e==ph2:: !?(t)(6)(0) PB(_dl,-1) PB(_dl,-3) PB(_dl,-5) + elseif comMC[e][1]==_fuse:: + for list==t:: !!?(list)(parMC[e][1])(comMC[e][2])(parMC[e][2]) endfor fi + elseif color e:: color_list[incr cntC]:=e; + for list==t:: PB(_set_adr,list) PB(_set_colorB,cntC) endfor fi fi + cntMC[ab_num]:=cntBS; + ab_num %--- Retern value ------- + endgroup +enddef; +%------------------------------------------------------------------------------------------------- +def PA(expr b,c)= comMC[ab_num][incr cntAS]:=b; parMC[ab_num][cntAS]:=c; enddef; +def @@(text t)(expr s)= begingroup save cntAS; cntAS:=0; ab_num:=ab_num+1; + if known s:: if numeric s:: + if (s>=H)and(s<=U):: for list==t:: PA(_set_adr,list) PA(_chg_atom,s) endfor + elseif s==NH:: for list==t:: + if numeric list:: PA(_set_adr,list) PA(_chg_atom,N) + PA(_tmp_line,no) PA(_tmp_len,_size_a) PA(_set_psA,H) + elseif pair list:: PA(xpart(list),ypart(list)) fi endfor + elseif s==SOO:: for list==t:: PA(_set_adr,list) PA(_chg_atom,S) + PA(_tmp_rot,35) PA(_tmp_line,dm) PA(_set_psA,O) + PA(_tmp_rot,-35) PA(_tmp_line,dm) PA(_set_psA,O) endfor + fi + elseif pair s:: xs:=xpart(s); ys:=ypart(s); PA(_set_clr,1) + for list==t:: + if numeric list:: + if xs==_postA:: elseif xs==_postB:: PA(_tmp_line,dm) + elseif xs==_postC:: PA(_tmp_line,wf) elseif xs==_postD:: PA(_tmp_line,zf) + elseif xs==_postE:: PA(_tmp_line,nl) elseif xs==_postF:: PA(_tmp_line,no) fi + PA(_set_adr,list) PA(_set_psA,ys) + elseif pair list:: PA(xpart(list),ypart(list)) fi + endfor + PA(_set_clr,0) + elseif color s:: color_list[incr cntC]:=s; + for list==t:: PA(_set_adr,list) PA(_set_colorA,cntC) endfor fi fi + cntMC[ab_num]:=cntAS; + ab_num %--- Retern value ------- + endgroup +enddef; +%------------------------------------------------------------------------------------------------- +def PS(expr a,b)= comMC[0][incr cntMC[0]]:=a; parMC[0][cntMC[0]]:=b; enddef; +def ps_get(expr n)= cntC:=cntMC[0]; cntPS:=cntP; + for i=n upto cntP: PS(_jp_atom_abs,ps_adr[i]) PS(_push,1) + if ps_rot[i]<>0: PS(_rot_ang,ps_rot[i]) fi + if ps_env[i]<>hz: PS(_chg_env,ps_env[i]) fi + if (ps_line[i]<>0)and(ps_line[i]<>nl): PS(_tmp_line,ps_line[i]) fi + if ps_len[i]<>ratio_cr: PS(_tmp_len,ps_len[i]) fi PS(_chg_len,ratio_cr) + if ps_line[i]<>nl: if ps_line[i]=no: PS(_adj_ang,0) fi PS(_mk_bond,0) fi + for j=1 upto cntMC[ps_com[i]]: PS(comMC[ps_com[i]][j],parMC[ps_com[i]][j]) endfor + PS(_pop,1) PS(_term,0) + endfor + proc_atom(cntC+1); if cntP>cntPS: ps_get(cntPS+1); fi +enddef; +%------------------------------------------------------------------------------------------------- +def AUX(text s)=s addto chem_structure also currentpicture shifted(sft_X,sft_Y); clearit; enddef; +def MCf(text s)= MCd(1,1)(.5,.5)(s); enddef; +%------------------------------------------------------------------------------------------------- +def MCd(expr RW,RH)(expr FW,FH)(text s)= mc_num:=user_def_number; ab_num:=ab_def_number; + adrA:=adrB:=cntA:=cntB:=adrS:=cntPS:=angA[0]:=angB[0]:=br_ang[0]:=sB[0]:=cntC:=cntP:=0; + stkA[0]:=stkB[0]:=stkL[0]:=stkM[0]:=strAT:=f_lineT:=f_lenT:=f_envT:=f_rotT:=0; + eB[0]:=1; com_str[0]:=""; lineT:=si; str_cnt:=2000; posA[0]:=posB[0]:=posB[1]:=(0,0); + if (sw_numberA=1)or(sw_numberB=1): + ratio_atom_bond:=0.25; ratio_thickness_bond:=0.005; offset_atomn:=0; fi + if (sw_expand=1)or(sw_MOLfile=1): expand_set; fi + ''(0)(s,(_term,0)); proc_atom(1); if cntP>0: ps_get(1); fi font_use_check; + if sw_solid=1: size_setup; proc_skelton; scaling; + else: size_setup; proc_skelton; scaling; resize(RW,RH); size_setup; + if ratio_bond_width>max_bond_width: + ratio_bond_width:=max_bond_width; size_setup; proc_skelton; scaling; + else: for i=1 upto 4: proc_skelton; scaling; resize(RW,RH); size_setup; endfor fi fi + font_setup; + for i=1 upto cntB: put_bond(i,sB[i],eB[i],angB[i],lineB[i]); endfor + for i=1 upto cntA: + if sw_numberA=1: put_string(i,posA[i],0,decimal(i),1); elseif sw_numberB=1: + else: put_string(i,posA[i],br_ang[i],com_str[strA[i]],strW[strA[i]]); fi endfor + sft_X:=-min_x+(font_wd-len_x)*FW; sft_Y:=-min_y+(font_ht-len_y)*FH; + addto chem_structure also currentpicture shifted (sft_X,sft_Y); + clearit; +enddef; +%------------------------------------------------------------------------------------------------ +def draw_frame(expr LX,LY,PS,PN)= + draw unitsquare xscaled LX yscaled LY shifted PS wpcs PN; enddef; +def start_vector= draw (posA[1] shifted (-1mm,0))--(posA[1] shifted (-4mm,0)) + withpen penrazor rotated 90 scaled .8mm; + fill (posA[1] shifted (-2mm,-1mm))--posA[1]--(posA[1] shifted (-2mm,1mm))--cycle; +enddef; +%------------------------------------------------------------------------------------------------ +def proc_atom(expr n)= + f_Br:=f_En:=f_T:=rotT:=adrS:=f_lineT:=f_rotT:=f_lenT:=f_envT:=envT:=env:=0; + stkL[0]:=B_len:=ratio_cr; lenT:=ratio_cr; stkA[1]:=stkB[1]:=1; + for i=n upto cntMC[0]: com:= comMC[0][i]; par:=parMC[0][i]; + if com=_push: + if par=1: stkL[adrS]:=B_len; stkA[incr adrS]:=adrA:=cntA; stkB[adrS]:=adrB:=cntB; + elseif par=0: temp_len:=B_len; fi + elseif com=_pop: if par=1: adrA:=stkA[decr adrS]; adrB:=stkB[adrS]; B_len:=stkL[adrS]; + elseif par=0: B_len:=temp_len; fi + elseif com=_mk_bond: if (par=0)and(rotT<>0): rotT:=0; fi add_atom; + elseif com=_set_adr: adrT:=par; + elseif com=_set_atom: strAT:=par; + elseif com=_set_psA: ps_put(getA(adrT),par); + elseif (com>=_postA)and(com<=_postF): + if com=_postA: elseif com=_postB: lineT:=dm; elseif com=_postC: lineT:=wf; + elseif com=_postD: lineT:=zf; elseif com=_postE: lineT:=nl; + elseif com=_postF: lineT:=no; lenT:=_size_a; fi ps_put(cntA+1,par); + elseif com=_jp_bond: tempB:=getB(par); sB[cntB+1]:=sB[tempB]; f_Br:=1; + elseif com=0or_jp_atom: termA; sB[cntB+1]:=getA(par); f_Br:=1; + elseif com=_jp_atom_abs: sB[cntB+1]:=par; f_Br:=1; temp_cntB:=cntB; + elseif com=_chg_atom: strA[getA(adrT)]:=parMC[par][1]; + elseif com=_chg_len: if par=_ring_len: B_len:=ring_len; + elseif par=0: if B_len<0: B_len:=1; fi else: B_len:=par; fi + elseif com=_get_len: ring_len:=lenB[getB(par)]; + elseif com=_tmp_len: lenT:=par; + elseif com=_set_line: lineB[getB(adrT)]:=par; + elseif com=_dl: lineB[getB(par)]:=dl; + elseif (com=_chg_line)or(com=_tmp_line): lineT:=par; + elseif com=_tmp_rot: rotT:=par; + elseif com=_cyc: f_En:=getA(par); add_atom; + elseif com=_cyc_eB: f_En:=eB[getB(par)]; add_atom; + elseif com=_cyc_sB: f_En:=sB[getB(par)]; add_atom; + elseif com=_chg_env: env:=par; + elseif com=_tmp_env: envT:=par; + elseif com=_set_clr: + if par=1: if lineT<>si: f_lineT:=1; fi if rotT<>0: f_rotT:=1; fi + if lenT<>ratio_cr: f_lenT:=1; fi if envT<>hz: f_envT:=1; fi fi + if par=0: f_lineT:=f_rotT:=f_lenT:=f_envT:=rotT:=envT:=0; lineT:=si; lenT:=ratio_cr; fi + elseif com=_term: termA; + elseif com=_set_colorA: colorA[getA(adrT)]:=par; + elseif com=_set_colorB: colorB[getB(adrT)]:=par; + fi + endfor +enddef; +%------------------------------------------------------------------------------------------------- +def ps_put(expr n,p)= ps_adr[incr cntP]:=n; ps_com[cntP]:=p; ps_len[cntP]:=lenT; + ps_line[cntP]:=lineT; ps_rot[cntP]:=rotT; ps_env[cntP]:=envT; + if f_lineT=0: lineT:=si; fi if f_lenT=0: lenT:=ratio_cr; fi + if f_rotT=0: rotT:=0; fi if f_envT=0: envT:=hz; fi +enddef; +%------------------------------------------------------------------------------------------------- +def add_atom= lineB[incr cntB]:=lineT; lineT:=si; + if lenT=ratio_cr: lenB[cntB]:=B_len; else: lenB[cntB]:=lenT; lenT:=ratio_cr; fi + if f_Br=0: cntA:=cntA+1; sB[cntB]:=cntA; strA[cntA]:=strAT; strAT:=0; + if f_MP=1: colorA[cntA]:=colorB[cntA]:=0; fi else: f_Br:=0; fi + if f_En=0: eB[cntB]:=cntA+1; f_T:=0; else: eB[cntB]:=f_En; f_En:=0; f_T:=1; fi +enddef; +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +def proc_skelton= stkA[1]:=stkB[1]:=1; envT:=env:=f_lineT:=f_rotT:=f_lenT:=f_envT:=0; + adrA:=adrB:=cntA:=cntB:=angT:=adrS:=f_En:=f_Br:=rotT:=f_T:=0; + for i=1 upto cntMC[0]: com:=comMC[0][i]; par:=parMC[0][i]; + if com=_push: if par=1: stkM[adrS]:=env; adrS:=adrS+1; stkA[adrS]:=adrA:=cntA; + stkB[adrS]:=adrB:=cntB; + elseif par=0: temp_len:=B_len; fi + elseif com=_pop: if par=1: adrA:=stkA[decr adrS]; adrB:=stkB[adrS]; env:=stkM[adrS]; + elseif par=0: temp_len:=B_len; fi + elseif com=_jp_bond: tempB:=getB(par); posB[cntB+1]:=posA[sB[tempB]]; + angT:=angB[tempB]-180; f_Br:=1; rotT:=0; + elseif com=0or_jp_atom: termB; adrT:=getA(par); posB[cntB+1]:=posA[adrT]; + angT:=br_ang[adrT]; f_Br:=1; rotT:=0; + elseif com=_jp_atom_abs: adrT:=par; posB[cntB+1]:=posA[adrT]; + angT:=br_ang[adrT]; f_Br:=1; rotT:=0; temp_cntB:=cntB; + elseif com=_adj_ang: if (angT<40)or(angT>320): angT:=0; elseif angT<140: angT:=90; + elseif angT<220: angT:=180; else: angT:=270; fi + elseif com=_mk_bond: if (par=0)and(rotT<>0):par:=rotT; rotT:=0; fi add_B(par); + elseif com=_rot_ang: angT:=(angT+par) mod 360; + elseif com=_tmp_rot: rotT:=par; + elseif (com>=_postA)and(com<=_postF): rotT:=0; + elseif com=_chg_env: env:=par; + elseif com=_tmp_env: envT:=par; + elseif com=_set_clr: f_clr:=par; if par=0: lineT:=si; lenT:=ratio_cr; rotT:=envT:=0; fi + elseif com=_cyc: f_En:=1; proc_cyc(getA(par)); + elseif com=_cyc_sB: f_En:=1; proc_cyc(sB[getB(par)]); + elseif com=_cyc_eB: f_En:=1; proc_cyc(eB[getB(par)]); + elseif com=_term: termB; + fi + endfor +enddef; +%------------------------------------------------------------------------------------------------- +vardef getA(expr n)= if n>=1: stkA[adrS+1]+n elseif n<=-1: cntA+n+1 + elseif n>0: stkA[adrS]+2048n elseif n<0: -2048n fi enddef; +vardef getB(expr n)= if n>=1: stkB[adrS+1]+n elseif n<=-1: cntB+n+1 elseif n=0: tempB + elseif n>0: stkB[adrS]+2048n elseif n<0: -2048n fi enddef; +def termA= if f_T=0: if f_Br=0: strA[incr cntA]:=strAT; strAT:=0; + if f_MP=1: colorA[cntA]:=0; fi else: f_Br:=0; fi f_T:=1; fi enddef; +def termB= if f_T=0: if f_Br=0: br_ang[incr cntA]:=angT; else: f_Br:=0; fi f_T:=1; fi enddef; +def proc_cyc(expr n)= add_B(angle(posA[n]-posB[cntB+1])-angT); enddef; +def glu_c(expr n)= if strA[n]<>0: nB:=angT mod 180; nC:=.5strW[strA[n]]*AL; + if (nB<45)or(nB>135):glu:=glu+((sind(nB)*nC)++nC); + else :glu:=glu+((cosd(nB)*.5AL)++.5AL) fi fi enddef; +%------------------------------------------------------------------------------------------------- +def add_B(expr m)= + cntB:=cntB+1; if m=_arg_ang: tn:=proc_env(angT,env,60,-60); else: tn:=m; fi + if f_Br=0: adrT:=cntA:=cntA+1; posA[cntA]:=posB[cntB]; angA[cntA]:=angT; + if tn>=0: br_ang[cntA]:=angT+tn/2-90; else: br_ang[cntA]:=angT+tn/2+90; fi + else: f_Br:=0; fi + angB[cntB]:=angT:=(angT+tn) mod 360; + if f_En=0: if lenB[cntB]=_size_a: posB[cntB+1]:=sfB(posB[cntB],AL,angT); + else: nA:=lenB[cntB];glu:=0; if nA<0: nA:=-nA; glu_c(adrT);glu_c(cntA+1); fi + posB[cntB+1]:=sfB(posB[cntB],nA*BL+glu,angT); fi + posA[cntA+1]:=posB[cntB+1]; f_T:=0; + else: f_En:=0; f_T:=1; fi +enddef; +%------------------------------------------------------------------------------------------------- +vardef proc_env(expr n,m,a,b)= r:=(n mod 360); + if m>=first_def_number: parMC[m][cntB-temp_cntB-1] else: + if m=hz:if r=0:a elseif r<=90:b elseif r<=180:a elseif r<270:b else:a fi + elseif m=vt:if r=0:b elseif r<90:a elseif r<=180:b elseif r<=271:a else:b fi + elseif (m>=-180)and(m<=180): m fi fi +enddef; +%------------------------------------------------------------------------------------------------- +def pic_c(expr i,s)= substring(i,i+1) of s enddef; +def put_string(expr n,p,r,s,w)= + if ((r mod 360)<=90+1)or((r mod 360)>=270-1): dx:=1; else: dx:=-1; fi + pairT:=p-(.5AL*w*dx,.5AL); u:=j:=0; + for i=0 upto length(s)-1: nB:=ASCII(pic_c(i,s)); + if dx<0: if nB=par_s:k:=i+1;j:=1;forever:exitif pic_c(i+(incr j),s)="}";endfor fi + if j>0: nB:=ASCII(pic_c(k+(decr j),s)); fi fi + if nB=score_u: if u=0: u:=-.5; else:u:=0; fi; + elseif nB=hat: if u=0: u:= .5; else:u:=0; fi; + elseif (nB<>par_s)and(nB<>par_e): nA:=atom_w[nB]; pairA:=pairT+(.5*((dx-1)*nA),u*AL); + if sw_atom_frame=1: draw_frame(nA,AL,pairA,0.01pt); fi + if (sw_numberA=1)or(sw_numberB=1): + erase fill unitsquare xscaled nA yscaled AL shifted pairA wpcs 0.01pt; fi + addto currentpicture also atom_font[nB] shifted (pairA-(0,atom_d[nB])) Cp(colorA[n]); + pairT:=pairT+(nA*dx,0); fi endfor +enddef; +%------------------------------------------------------------------------------------------------- +def wpcs expr n= withpen pencircle scaled n enddef; +def sqr(expr WD,HT)= ((0,0)--(WD,0)--(WD,HT)--(0,HT)--cycle) enddef; +def sfB(expr p,l,r)= p shifted ((l,0) rotated r) enddef; +def z_put(expr PA,PB,PD,CL)= save nA,nC,nD; nC:=length(Le-Ls); + for i=0 upto nC/zebra_gap: + nA:=zebra_gap*i/nC; nD:=(zebra_gap*i+ratio_zebra_black*zebra_gap)/nC; + if nD>((nC-zebra_gap)/nC): nD:=1; fi + fill nA[PB,PA]--nA[PD,PA]--nD[PD,PA]--nD[PB,PA]--cycle Cp(CL); endfor +enddef; +def cut_off(expr p,w,h,s)= + p intersectionpoint sqr(1.1w,1.1h) shifted (s-(.5(1.1w),.5(1.1h))); enddef; +def clipping(expr SA,SB,PA,PB,LEN)= pT:=PA--PB; tn:=0.6AL/LEN; + if (SA=0)and(SB=0): Ls:=PA; Le:=PB; pA:=pB:=pT; pC:=0.1[PA,PB]--0.1[PB,PA]; + elseif SA=0: Ls:=PA; Le:=cut_off(pT,AL*strW[SB],AL,PB); + pA:=Ls--Le; pB:=Ls--tn[PB,PA]; pC:=0.1[PA,PB]--Le; + elseif SB=0: Ls:= cut_off(pT,AL*strW[SA],AL,PA); Le:=PB; + pA:=Ls--Le; pB:=tn[PA,PB]--Le; pC:=Ls--(0.1)[PB,PA]; + else: Ls:=cut_off(pT,AL*strW[SA],AL,PA); Le:=cut_off(pT,AL*strW[SB],AL,PB); + pB:=tn[PA,PB]--tn[PB,PA]; pC:=pA:=Ls--Le; fi +enddef; +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +def draw_wv= nB:=3pen_wd; nA:=nB/length(Le-Ls); + draw Le for i=1 upto 1/nA: if odd(i): ..controls(((i-.5)*nA)[sfB(Le,nB,ap),sfB(Ls,nB,ap)]) + else: ..controls(((i-.5)*nA)[sfB(Le,nB,am),sfB(Ls,nB,am)]) fi ..(i*nA)[Le,Ls] endfor ..Ls; +enddef; +%------------------------------------------------------------------------------------------------- +def put_bond(expr n,BP,EP,ANG,LN)= nC:=length(posA[EP]-posA[BP]); +if (nC>0)and(LN<>0): ww:=wedge_wd; hpt:=.5pen_wd; ap:=ANG+90; am:=ANG-90; + if sw_numberB=1: clipping(0,0,posA[BP],posA[EP],nC); + else: clipping(strA[BP],strA[EP],posA[BP],posA[EP],nC); fi + pickup pencircle scaled pen_wd; + if known colorB[n]: nB:=colorB[n]; fi + if LN=si:draw pA Cp(nB); + elseif LN=dl:draw pA Cp(nB); draw sfB(pC,gap,ap) Cp(nB); + elseif LN=dr:draw pA Cp(nB); draw sfB(pC,gap,am) Cp(nB); + elseif LN=dm:draw sfB(pB,gap/1.75,ap) Cp(nB); draw sfB(pB,gap/1.75,am) Cp(nB); + elseif LN=tm:draw pA Cp(nB);draw sfB(pA,gap,ap) Cp(nB); draw sfB(pA,gap,am) Cp(nB); + elseif LN=wf:fill Ls--sfB(Le,ww,am)--sfB(Le,ww,ap)--cycle; + elseif LN=wb:fill sfB(Ls,ww,am)--Le--sfB(Ls,ww,ap)--cycle; + elseif LN=bd:draw pA withpen penrazor rotated ap scaled gap Cp(nB); + elseif LN=zf:z_put(Ls,sfB(Le,ww,ap),sfB(Le,ww,am),nB); + elseif LN=zb:z_put(Le,sfB(Ls,ww,am),sfB(Ls,ww,ap),nB); + elseif LN=dt:for i=0 step .75zebra_gap/length(Le-Ls) until 1: drawdot i[Ls,Le]; endfor + elseif LN=wv:draw_wv; + elseif LN=ov:erase draw 0.15[Ls,Le]--0.85[Ls,Le] wpcs gap; draw pA Cp(nB); + elseif LN=vf:draw pA Cp(nB);draw sfB(Le,gap,ANG-150)--Le--sfB(Le,gap,ANG+150) Cp(nB); + elseif LN=vb:draw pA Cp(nB);draw sfB(Ls,gap,ANG-30)--Ls--sfB(Ls,gap,ANG+30) Cp(nB); fi + if sw_numberB=1: put_string(n,.5[posA[BP],posA[EP]],0,decimal(n),1); fi fi +enddef; +%------------------------------------------------------------------------------------------------- +vardef fit_zero(expr n)=if n<=9: "00" elseif n<=99: "0" fi enddef; +def logfile_out= + printf "%------------------------------------------------------------------"; + printf "\MOLinfo{"&info[1]&"}{"&info[2]&"}{"&info[3]&"}{"&info[4]&"}%"; + printf "{"&info[5]&"}{"&info[ 6]&"}{"&info[ 7]&"}{"&info[ 8]&"}"& + "{"&info[9]&"}{"&info[10]&"}{"&info[11]&"}{"&info[12]&"}%"; + printf "\MCFinfo{"&jobname&"}"&"{"&decimal(char_num)&"}"&"{"&mp_filename&"}"&"{"&decimal(len_x) + &"}"&"{"&decimal(len_y)&"}"&"{"&decimal(ratio_bond_width)&"}"&"{"&decimal(cntA)&"}"&"{}{}%"; +enddef; +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +mc_num:=first_def_number; +lr:='(60 for i==1 upto 10:: ,-60,60 endfor); rl:='(-60,lr); +def ring expr n=^^((-180 DIV n)-90),(_chg_len,0) + for i==2 upto n:: ,(360 DIV n) endfor,(_cyc_sB,1-n) enddef; +for i=3 upto 20: ??[i]:='({{,ring i,}}); endfor +for i=3 upto 20: ?[i]:='({,ring i,}); endfor +Ph:=Ph1:='( ?6,(_dl,-2),(_dl,-4),(_dl,-6)); Ph2:='( ?6,(_dl,-1),(_dl,-3),(_dl,-5)); +ph:=ph1:='(??6,(_dl,-2),(_dl,-4),(_dl,-6)); ph2:='(??6,(_dl,-1),(_dl,-3),(_dl,-5)); +!:='((_mk_bond,_arg_ang)); !0:='(^^180,180); +for i=1 upto 20: !![i]:='(! for j==2 upto i::,! endfor); endfor +for i=1 upto 20: ![i]:='({,!![i],}); endfor +!!:=!!1; Me:='(); Et:=!; Pr:='(!,!); Bu:='(!,!,!); +for i=4,5,6: for j=2 upto i-2: ?[i][j]:='((_fuse,i),(j,1)); endfor endfor +for i=4,5,6: for j=2 upto i-2: ??[i][j]:='((_fuse,i),(j,0)); endfor endfor +%------------------------------------------------------------------------------------------------- +H :='("H");C:='("C");N:='("N");O:='("O");F:='("F");S:='("S");P:='("P");I:='("I"); +Si:='("{Si}");Al:='("{Al}");Mg:='("{Mg}");Zn:='("{Zn}");As:='("{As}");Cu:='("{Cu}"); +Ag:='("{Ag}");Au:='("{Au}");Sn:='("{Sn}");Cl:='("{Cl}");Br:='("{Br}");Li:='("{Li}"); +Na:='("{Na}");Ca:='("{Ca}");Hg:='("{Hg}");Ni:='("{Ni}");Ti:='("{Ti}");U:='("U"); +%------------------------------------------------------------------------------------------------- +plus:='("+"); minus:='("-"); HH:='("H{_2_}"); NH:='(N,*/*H); NnoH:='(); SO:='(S,//O); +SOO :='(S,//O^-35,//O^35); CHO:='("CHO"); OH:='("OH"); COOH:='("COOH"); CH2:='("C{H_2_}"); +CH3:='("C{H_3_}"); CN:='("CN"); NH2:='("N{H_2_}"); NO2:='("N{O_2_}"); SH:='("SH"); +SO3:='("S{O_3_}"); NMe:='(N,/Me); tBu:='(60,-2\,-3*,60); iPr:='(60,-2\); OMe:='(O,!); +SMe:='(S,!); OEt:='(O,!,Et); SEt:='(S,!,Et); OiPr:='(O,!,iPr); SiPr:='(S,!,iPr); +OPr:='(O,!,Pr); SPr:='(S,!,Pr); COO:='(//O,!,O); COOMe:='(COO,!); COMe:='(//O,!); +OCOMe:='(O,!,//O,!); COOEt:='(COO,!,Et); COOiPr:='(COO,!,iPr); COOPr:='(COO,!,Pr); +COOtBu:='(COO,!,tBu); NMeMe:='(N,/Me,!); NHCOMe:='(NH,!,//O,!); NHiPr:='(NH,!,iPr); +NHtBu:='(NH,!,tBu);NHH:='(N,/H,!,H); NHMe:='(NH,!); NHEt:='(NH,!,Et); +CF2:='(/F,60,F); CCl2:='(/Cl,60,Cl); CBr2:='(/Br,60,Br); CF3:='(/F,/F^60,60,F); +CCl3:='(/Cl,/Cl^60,60,Cl);CBr3:='(/Br,/Br^60,60,Br);O_H:='(O,!,H);CO_H:='(//O,!,H); +%------------------------------------------------------------------------------------------------ +CO_OH:='(//O,!,O,!,H); C_N:='(!~tm,N); N_HH:='(N,/H,60,H); N_OO:='(N,//O,60~dm,O); +S_H:='(S,!,H); N_H:='(N,/H); C_HHH:='(/H,/H^60,60,H); +%------------------------------------------------------------------------------------------------ +def expand_set= save CH,NH,NO,OH,CHO,COOH,CN,SH; + CH3:=C_HHH; NH:=N_H; NH2:=N_HH; NO2:=N_OO; OH:=O_H; CHO:=CO_H; COOH:=CO_OH; CN:=C_N; SH:=S_H; +enddef; +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +def font_size_set(expr m)(expr n)(expr o)(expr s)=% + for j=0 upto length(s)-1: num_a:=ASCII(pic_c(j,s)); + if f_FON[num_a]=1: atom_w[num_a]:=m*AL; atom_h[num_a]:=n*AL; atom_d[num_a]:=o*AL; fi + endfor +enddef; +def font_size_setup= font_size_set( 1)( 1)(0)("CGHMNOQ"); + font_size_set( .9)( 1)(0)("ABDEFIJKLPRSTUVWXYZ-+/>")(cutdraw z01--(aW,hH)--z12); +FD("<")(cutdraw z16--z08--z05); +FD("0")(draw z09...z14...z10...z19...cycle); +FD("1")(draw (hW, 0)--(hW,aH)--(hW-hP,fH)--(hW-hP,aH-2.5hP) vL); +FD("2")(cutdraw SP(0,.71)(hP,1.3hP)--(fW,.55aH)..z14..(hP,.5aH)..(hW,.27aH); draw z05--z01 hL); +FD("3")(cutdraw SP(0,.77)POh; cutdraw SP(.23,.95)POh sH .5aH-hP; draw (.3aW,hH)--(hW,hH) hL); +FD("4")(draw (0,.3aH)--(aW,.3aH) hL; draw (.7aW,0)--(.7aW,aH)--(1.2hP,.3aH+hP) vL); +FD("5")(draw z12--z16 hL; draw z13--(hP,.49aH) vL; + cutdraw (.5hP,.15aH)..(.65aW,1.3hP)..(fW,.3aH)..(hW,.6aH)..(.6hP,.53aH)); +FD("6")(draw z19..(fW,.5fW)..(hW,fW)..(hP,.5fW)..cycle; cutdraw (hP,.4aH)--(hW,aH)); +FD("7")(draw (0,.fH)--(aW,fH) hL; draw (aW-1.2hP,aH-fP)--(.4aW,0) vL scaled 1.2); +FD("8")(draw POh; draw (hP,.75aH)...z14...(fW,.75aH)...(hW,hH)...cycle;); +FD("9")(draw z19..(fW,.5fW)..(hW,fW)..(hP,.5fW)..cycle sH .32aH; cutdraw (fW,.6aH)--(hW, 0)); +FD("A")(draw z02--(hW,aH)--z07 vL scaled 1.14; draw .33[z02,(hW,aH)]--.33[z07,(hW,aH)]); +FD("B")(draw z13--z14{right}..(.9fH,.75aH)..{left}(.5aW,hH)--z09--(.5aW,hH){right}.. + (.9fH,.25aH)..{left}z19--z03; draw z02--z18 vL); +FD("C")(cutdraw SP(.05,.95)PO); +FD("D")(draw z13--z14..z10..z19--z03; draw z02--z18 vL); +FD("E")(draw z05--z01 hL;draw z12--z16 hL;draw z08--(aW,hH) hL;draw z02--z18 vL); +FD("F")(draw z12--z16 hL; draw (0,.45aH)--(fW,.45aH) hL; draw z02--z13 vL); +FD("G")(cutdraw SP(.06,.97)PO; draw bot (hW,hH)-- bot (aW,hH) hL); +FD("H")(draw z02--z18 vL; draw z09--z10; draw z07--(fW,aH) vL); +FD("I")(draw z19--z14 vL; draw (hW-fP,hP)--(hW+fP,hP) hL; draw (hW-fP,fH)--(hW+fP,fH) hL); +FD("J")(cutdraw z09..(hP,.4aH){down}..{right}z19{right}..{up}(fW,.4aH)..(fW,aH)); +FD("K")(cutdraw z02--z18; cutdraw .5[.45[z02,z18],z16]--z07; cutdraw .45[z02,z18]--z16); +FD("L")(draw z05--z01 hL; draw z02--z18 vL); +FD("M")(draw z02--z18 vL; draw z18--z19--(fW,aH) vL scaled 1.14; draw (fW,aH)--z07 vL); +FD("N")(draw z02--z18 vL; draw z07--(fW,aH) vL;draw (1.4hP,aH)--(aW-1.4hP,0) vL scaled 1.4); +FD("O")(draw PO); +FD("P")(draw z02--z18 vL; draw z13--(.3aW,fH){right}..(fW,.7aH)..{left}(.3aW,.44aH)..(hP,.44aH)) +FD("Q")(draw PO; draw (.6aW,.4aH)--z07); +FD("R")(draw z02--z18 vL; draw z13--(.3aW,fH){right}..(fW,.7aH)..{left}(.3aW,.44aH)..(hP,.44aH); + cutdraw z07{up}..{left}(hW,.44aH)); +FD("S")(cutdraw SP(.05,.45)PO; cutdraw SP(.55,.95)PO; draw (fW,.3aH){up}..{up}(hP,.7aH)); +FD("T")(draw z12--z16 hL;draw .5[z12,z16]--(hW, 0) vL); +FD("U")(cutdraw z18..z09{down}..{right}z19{right}..{up}z10..(fW,aH)); +FD("V")(draw z18--(hW, 0) vL scaled 1.2; draw (hW, 0)--(fW,aH) vL scaled 1.2); +FD("W")(draw z18--(.25aW,0)--(hW,aH)--(.75aW,0)--(fW,aH) vL scaled 1.08); +FD("X")(draw z18..z07 vL scaled 1.4; draw z02..(fW,aH) vL scaled 1.4); +FD("Y")(draw z18--(hW,hH)--(fW,aH) vL scaled 1.2; draw (hW,hH)--(hW, 0) vL); +FD("Z")(draw z12--z16 hL;draw (1.4hP,fP)--(aW-1.4hP,aH-fP) vL scaled 1.4;draw z01--z05 hL); +FD("-")(draw z09--z10 hL); +FD("=")(draw (hP,.3aH)--(fW,.3aH) hL;draw (hP,.6aH)--(fW,.6aH) hL); +FD("/")(draw (fW,fH)..z01); +FD("+")(draw z19--z14 vL; draw z09--z10 hL); +FD("a")(draw z19..z10..z14..z09..cycle; draw z07--(fW,aH) vL); +FD("b")(draw z19..z10..(hW,aW)..z09..cycle; draw z02--(hP,1.2aH) vL); +FD("c")(cutdraw SP(.06,.94)z10..z14..z09..z19..cycle); +FD("d")(draw z19..z10..(hW,aW)..z09..cycle; draw z07--(fW,1.2aH) vL); +FD("e")(cutdraw SP(0,.92)z10..z14..z09..z19..cycle; draw z10--z09); +FD("f")(cutdraw (.5aW,0)--(.5aW,.75aH){up}..(.75aW,fH)..{down}(fW,.8aH); draw z08--(aW,hH) hL); +FD("g")(draw z19..z10..(hW,aW)..z09..cycle sH .3aH; cutdraw (fW,aH)--(fW,hP)..(hW,0)..(.1aW,fP)); +FD("h")(draw z02..(hP,.3aH){up}..(hW,.7fH)..{down}(fW,.3aH)..z07; draw (hP,.3aH)--z18 vL); +FD("i")(draw (hW, 0)--(hW,.63aH) vL; draw z14 wpcs 1.4fP); +FD("j")(draw z19--(hW,.63aH) vL; draw z19..(.25aW,-hP)..z01; draw z14 wpcs 1.4fP); +FD("k")(draw z02--z18 vL; cutdraw .5[.45[z02,z18],z16]--z07; cutdraw .45[z02,z18]--z16); +FD("l")(draw (hW, 0)--(hW,aH) vL; draw z14--z13 hL; draw z19--(fW,hP) hL); +FD("m")(cutdraw z02..(hP,.3aH){up}..(.28aW,.7fH)..{down}(hW,.3aH)..(hW, 0); + cutdraw (hW,.3aH){up}..(.7aW,.7aH-hP)..{down}(fW,.3aH)..z07; draw (hP,.3aH)--(hP,.7aH) vL); +FD("n")(cutdraw z02..(hP,.3aH){up}..(hW,.7fH)..{down}(fW,.3aH)..z07; draw (hP,.3aH)--(hP,.7aH) vL); +FD("o")(draw z19..z10..z14..z09..cycle); +FD("p")(draw z19..z10..(hW,aW)..z09..cycle sH .3aH; draw (hP,0)--z18 vL); +FD("q")(draw z19..z10..(hW,aW)..z09..cycle sH .3aH; draw (fW,0)--(fW,aH) vL); +FD("r")(cutdraw SP(.35,.72)z19..z10..z14..z09..cycle sH -fP; draw z02--z18 vL); +FD("s")(cutdraw SP(.05,.45)PO; cutdraw SP(.55,.95)PO; draw (fW,.3aH){up}..{up}(hP,.7aH)); +FD("t")(draw (hW, 0)--(hW,aH) vL; draw (0,.66aH)--(aW,.66aH) hL); +FD("u")(cutdraw z18..(hP,.55aH){down}..z19..(fW,.55aH){up}..(fW,aH); draw (fW,aH)--z07 vL); +FD("v")(draw z18--(hW, 0)--(fW,aH) vL); +FD("w")(draw z18--(.25aW,0)--(hW,aH)--(.75aW,0)--(fW,aH) vL); +FD("x")(draw z18--z07 vL scaled 1.4; draw (fW,aH)--z02 vL scaled 1.4); +FD("y")(draw z18--(hW,hH) vL scaled 1.4; draw (fW,aH)--z02 vL scaled 1.4); +FD("z")(draw z12--z16 hL;draw (1.4hP,fP)--(aW-1.4hP,aH-fP) vL scaled 1.4; draw z01--z05 hL); +enddef; +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +def blank_str:= " " enddef; +def fixed_r(expr n)(expr s)= (substring(0,n-length(s)) of blank_str)&s enddef; +def fixed_l(expr n)(expr s)= s&(substring(0,n-length(s)) of blank_str) enddef; +def fdr(expr n)(expr s)=fixed_r(n)(decimal(s)) enddef; +def warning(expr s)= message "%"&fdr(3)(incr warning_cnt)&")"&s&" !!!"; enddef; +def B_check(expr s)(expr t)(expr n)= + if com_str[strA[s]]=t: if nA>n: + warning(fdr(4)(s)&" ["&com_str[strA[s]]&"] has "&fdr(3)(nA)&" bonds"); fi fi enddef; +vardef stripP(expr a)=if length(a)=4: substring (1,3) of a else: a fi enddef; +def STa(expr a,b)= tblA[incr tbl_cnt]:=a; tblN[tbl_cnt]:=0; wtA[tbl_cnt]:=b; enddef; +def STb(expr a)(text s)= tblA[incr tbl_cnt]:=a; tblN[tbl_cnt]:=0; + for list=s: tblN[tbl_cnt]:=tblN[tbl_cnt]+1; + for j=1 upto tbl_max: if list=tblA[j]: tblB[tbl_cnt][tblN[tbl_cnt]]:=j; fi endfor + endfor +enddef; +%------------------------------------------------------------------------------------------------- +tbl_cnt:=0; +STa("C",12.0107); STa("H",1.00794); STa("{Al}",26.9815); STa("{As}",74.9236); STa("B",10.811); +STa("{Br}",79.904); STa("{Ca}",40.078); STa("{Cl}",35.453); STa("{Cu}",63.546); STa("D",2.012); +STa("F",18.9984); STa("{Fe}",55.845); STa("{Hg}",200.59); STa("I",126.90447); STa("K",39.0983); +STa("{Li}",6.941); STa("{Mg}",24.305); STa("N",14.007); STa("{Na}",22.990); STa("{Ni}",58.693); +STa("O",15.9994); STa("P",30.973761); STa("S",32.065); STa("{Si}",28.0855); STa("{Sn}",118.71); +STa("{Ti}",47.867); STa("{Zn}",65.409); +tbl_max:=tbl_cnt;; +STb("{H_2_}")("H","H"); STb("OH")("O","H"); STb("O{Na}")("O","{Na}"); STb("CN")("C","N"); +STb("CHO")("C","H","O"); STb("N{O_2_}")("N","O","O"); STb("N{H_2_}")("N","H","H"); +STb("S{O_3_}")("S","O","O","O"); STb("COOH")("C","O","O","H"); +STb("C{H_3_}")("C","H","H","H"); STb("C{F_3_}")("C","F","F","F"); +%------------------------------------------------------------------------------------------------- +def mol_check= hide_H:=warning_cnt:=0; for i=1 upto tbl_max: sumA[i]:=0; endfor + for i=1 upto cntA: knownA:=nA:=0; + for j=1 upto cntB: if (lineB[j]=dl)or(lineB[j]=dr)or(lineB[j]=dm): nB:=2; + elseif (lineB[j]=tm): nB:=3; elseif lineB[j]=nl: nB:=0; + elseif lineB[j]=0: nB:=0; else: nB:=1; fi + if (sB[j]=i)or(eB[j]=i): nA:=nA+nB; fi endfor + Bcnt[i]:=nA; + if com_str[strA[i]]="": com_str[strA[i]]:="C"; fi + if com_str[strA[i]]="C": if nA<4: hide_H:=hide_H+(4-nA); fi fi + B_check(i)("C")(4); B_check(i)("H")(1); B_check(i)("O")(2); + B_check(i)("F")(1); B_check(i)("{Cl}")(1); B_check(i)("{Br}")(1); + for j=1 upto tbl_cnt: + if com_str[strA[i]]=tblA[j]: + if tblN[j]=0: sumA[j]:=sumA[j]+1; + else: for k=1 upto tblN[j]: sumA[tblB[j][k]]:=sumA[tblB[j][k]]+1; endfor fi + knownA:=1; fi endfor + if knownA=0: warning(" Unknown Str("&com_str[strA[i]]&") is used "&decimal(i)); fi + endfor + sumA[2]:=sumA[2]+hide_H; +enddef; +%------------------------------------------------------------------------------------------------- +def checklist_out= Mol_wt:=Mol_wtp:=nA:=0; fomula_str:=""; + message "% There were "&fdr(3)(warning_cnt)&" warnings"; + message "% width * height = " & fdr(8)(max_x-min_x)&" * "&fdr(8)(max_y-min_y); + message "% Shift width * height = "& fdr(8)(min_x)&" * "&fdr(8)(min_y); + message "% Bond length = "&fdr(3)(BL)&" Atom size = "&fdr(3)(AL); + message "% Atom count="&fdr(3)(cntA)&" Bond count="&fdr(3)(cntB)& + " Ring count = "&fdr(3)(cntB-cntA+1); + message "%-----------------------------------< atom >< bond >-------"; + for i=1 upto cntA: message "% "&fdr(3)(i)&" ("&fdr(10)(xpart(posA[i])/BL)&" ) ("& + fdr(10)(ypart(posA[i])/BL)&" ) "&fixed_l(8)(com_str[strA[i]])&" "&fdr(3)(Bcnt[i]); endfor + message "%Bond list---------------------------------------------------------"; + for i=1 upto cntB: if lineB[i]<>0: message "% "&fdr(3)(incr nA)&" "&fdr(3)(sB[i])& + " -> "&fdr(3)(eB[i])&" ("&fdr(3)(lineB[i]-si+1)&")"; fi endfor + message "%Fomula -----------------------------------------------------------"; + for i=1 upto tbl_max: + if sumA[i]>=1: tmp_wtp:=(wtA[i]/100)*sumA[i]; + if (tmp_wtp<=40)and(Mol_wtp<=40): Mol_wt:=Mol_wt+(wtA[i]*sumA[i]); + else: Mol_wtp:=Mol_wtp+tmp_wtp; fi + fomula_str:=fomula_str&stripP(tblA[i])&decimal(sumA[i]); + message "% "&fixed_l(4)(stripP(tblA[i]))&"("&fdr(9)(wtA[i])&") * "&fdr(6)(sumA[i])&" = " + if tmp_wtp<=40: &fdr(12)(wtA[i]*sumA[i]); else: &fdr(12)(tmp_wtp)&" * 100"; fi fi + endfor + message "% Hide H = "&fdr(3)(hide_H); + message "% Molecular Weight: " + if Mol_wtp<=40: &fdr(10)(Mol_wt); else: &fdr(10)(Mol_wtp)&" * 100"; fi + message "% --------------------------------------"; + message "% Molecular Fomula: "&fomula_str; + message "%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%"; +enddef; +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +def MOL_out= mp_log_name:=jobname&"-"&fit_zero(char_num)&decimal(char_num)&"-"&mol_name&".mol"; + printf ""; printf " -MCFtoMOL- "&fixed_l(20)(info[1]); printf ""; + printf fdr(3)(cntA)&fdr(3)(cntB)&" 0 0 0 0 0 0 0 0999 V2000"; + for i=1 upto cntA: printf fdr(10)(xpart(posA[i])/BL)& fdr(10)(ypart(posA[i])/BL)& + fdr(10)(0)&" "&fixed_l(2)(stripP(com_str[strA[i]]))&" 0 0 0 0"; endfor + for i=1 upto cntB: if lineB[i]<>0: + if (lineB[i]=dl)or(lineB[i]=dr)or(lineB[i]=dm): nA:=2; + elseif lineB[i]=tm: nA:=3; + elseif (lineB[i]=wf)or(lineB[i]=zb)or(lineB[i]=bd): nB:=1; + elseif (lineB[i]=zf)or(lineB[i]=wb)or(lineB[i]=dt): nB:=6; + elseif lineB[i]=wv: nB:=4; else: nA:=1; nB:=0; fi + printf fdr(3)(sB[i])&fdr(3)(eB[i])&fdr(3)(nA)&fdr(3)(nB)&" 0 0"; fi endfor + printf "M END"; +enddef; +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% diff --git a/Master/tlpkg/bin/tlpkg-ctan-check b/Master/tlpkg/bin/tlpkg-ctan-check index e0fb06db21d..bfe076982f2 100755 --- a/Master/tlpkg/bin/tlpkg-ctan-check +++ b/Master/tlpkg/bin/tlpkg-ctan-check @@ -362,7 +362,7 @@ my @TLP_working = qw( mathcomp mathdesign mathdots mathexam mathspec mathtools matlab-prettifier mathspic maths-symbols mattens maybemath mbenotes - mcaption mceinleger mcite mciteplus mcmthesis + mcaption mceinleger mcf2graph mcite mciteplus mcmthesis mdframed mdputu mdsymbol mdwtools media9 meetingmins memdesign memexsupp memoir MemoirChapStyles memory mentis menu menukeys merriweather diff --git a/Master/tlpkg/libexec/ctan2tds b/Master/tlpkg/libexec/ctan2tds index d6573a4b18a..ccad4f5416f 100755 --- a/Master/tlpkg/libexec/ctan2tds +++ b/Master/tlpkg/libexec/ctan2tds @@ -1888,6 +1888,7 @@ $standardtex='\.(.bx|cfg|sty|clo|ldf|cls|def|fd|fontspec|cmap|4ht)$'; 'marvosym', 'fonts', 'mathabx', 'fonts', 'mathdots', 'generic', + 'mcf2graph', 'metapost', 'memdesign', 'fonts', 'metafont-beginners', 'fonts', 'metatex', 'plain', @@ -2371,6 +2372,7 @@ $standardmp = '\.mp$'; 'hatching', '[^e].mp', # no htchuse.mp 'latexmp', 'latexmp.mp', 'latex-graphics-companion', 'NULL', # doc package + 'mcf2graph', 'mcf2graph.mf', # not the examples 'metapost-examples', 'NULL', # doc package 'mpattern', 'mpattern.mp', # don't install test.mp 'mp3d', '^(3d|ani)', # not examples @@ -2477,7 +2479,8 @@ $standardmfinstall = '\.mf$'; 'cmcyr' => '\.mf', 'ibygrk' => 'ibycus4\.map', # tex|mf source 'ifsym' => $standardmfinstall . '|\.gen', - 'niceframe', => '(karta|umrand).*\.mf', # not bbding or dingbat + 'mcf2graph' => 'NULL', + 'niceframe' => '(karta|umrand).*\.mf', # not bbding or dingbat 'pl' => '\.mf', # include .mft 'tipa' => $standardmfinstall . '|[^c]\.def$', 'wnri' => $standardmfinstall . '|wnindic\.map',# mf source diff --git a/Master/tlpkg/tlpsrc/collection-metapost.tlpsrc b/Master/tlpkg/tlpsrc/collection-metapost.tlpsrc index 987993bd33a..e225c5b7123 100644 --- a/Master/tlpkg/tlpsrc/collection-metapost.tlpsrc +++ b/Master/tlpkg/tlpsrc/collection-metapost.tlpsrc @@ -21,6 +21,7 @@ depend garrigues depend gmp depend hatching depend latexmp +depend mcf2graph depend metago depend metaobj depend metaplot diff --git a/Master/tlpkg/tlpsrc/mcf2graph.tlpsrc b/Master/tlpkg/tlpsrc/mcf2graph.tlpsrc new file mode 100644 index 00000000000..e69de29bb2d -- cgit v1.2.3