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-% -*- TeX:US -*-
-\NeedsTeXFormat{LaTeX2e}
-\documentclass[presentation,hideothersubsections,final,10pt]{beamer}
-% LaTeX course created for the Biochemistry faculty at RUSM. The course is based on the
-% /info/german/tex-kurs by Rainer Rupprecht (1988), which I have translated to English and
-% taken to LaTeX2e/Beamer. Additional info from the l2kurz introduction to LaTeX.
-% This material may be used under Gnu Copyleft
-
-% everyone:
-\usepackage{german,siunitx,hyperref,graphicx,arev,amsmath,textcomp,wasysym,marvosym,isotope,chemarrow}
-\usepackage[latin1]{inputenc}
-\usepackage[T1]{fontenc}
-\usepackage[Euler]{upgreek}
-
-\mode<article>{\usepackage{fullpage}}
-\mode<presentation>{\usetheme{Goettingen}\usecolortheme{ross}}
-\mode<handout>{\setbeamercolor{background canvas}{bg=black!5}}
-\beamertemplatenavigationsymbolsempty
-
-\newcommand{\ph}{\textit{p}H}
-
-\newcommand{\single}{\raisebox{0.25ex}{\ensuremath{-}}}
-\newcommand{\double}{\raisebox{0.25ex}{\ensuremath{=}}}
-\newcommand{\triple}{\raisebox{0.25ex}{\ensuremath{\equiv}}}
-\makeatletter
-\DeclareRobustCommand{\chemical}[1]{%
- {\(\m@th
- \edef\resetfontdimens{\noexpand\)%
- \fontdimen16\textfont2=\the\fontdimen16\textfont2
- \fontdimen17\textfont2=\the\fontdimen17\textfont2\relax}%
- \fontdimen16\textfont2=2.7pt \fontdimen17\textfont2=2.7pt
- \mathsf{#1}%
- \resetfontdimens}}
-\makeatother
-
-\frenchspacing \selectlanguage{english}
-
-\title{The \alert{\LaTeX} document preparation system}
-\institute{Department of Biochemistry, RUSM}
-\author{Dr Engelbert Buxbaum}
-\date{July 2008 \vspace{5mm}\\
- \includegraphics[height=15mm]{Graphics/Ross-Siegel}\hspace{5mm}
- \includegraphics[height=15mm]{Graphics/30th-Anniversary-logo}
- }
-
-\definecolor{darkgreen}{rgb}{0.008,0.417,0.067}
-
-\begin{document}
-\setbeamertemplate{footline}
- {%
- \insertframenumber
- }
-
-\frame{\titlepage}
-
-\section{Introduction}
-
-\begin{frame}
- \frametitle{Name of the game}
- \begin{description}
- \item[\TeX]{typesetting system developed by
- \textsc{Donald E. Knuth} (Stanford University) to
- create beautiful documents, especially those
- containing maths. \TeX\ is free software with
- copyright vested in the American Mathematical
- Society.}
- \item[\LaTeX]{\TeX -macroprocessor written by \textsc{Leslie
- Lamport}, which implements a markup-language. Users can
- concentrate on the structure of their document rather than on
- formatting.}
- \end{description}
-\end{frame}
-
-\begin{frame}
- \frametitle{Typographic design}
- \begin{itemize}
- \item{craft that needs to be learned}
- \item{not about esthetics but about function: Books are
- read, not displayed in a museum}
- \end{itemize}
-\end{frame}
-
-\subsection{Advantages and disadvantages}
-
-\begin{frame}
- \frametitle{Advantages}
- \begin{itemize}
- \item{Several professional styles are available that
- make documents look ``like printed''. Changing
- style requires changing one single line in the
- document, consistency is ensured.}
- \item{High quality math typesetting}
- \item{Only a few commands to define the structure of
- text, no knowledge of typography or book design
- required.}
- \item{Complex scientific documents can be created
- automatically:
- \begin{itemize}
- \item{bibliography}
- \item{index}
- \item{crossreferences}
- \item{table of contents, lists of figures,
- tables etc.}
- \item{...}
- \end{itemize} }
- \item{Operating-system independent}
- \item{Long-term storage of documents: ASCII rather
- than binary}
- \item{Free software with source code available: Errors
- are corrected rapidly}
- \end{itemize}
-\end{frame}
-
-\begin{frame}
- \frametitle{Disadvantages}
- \begin{itemize}
- \item{Learning curve}
- \item{Major changes in layout may require rewriting the
- style file (blessing in disguise)}
- \item{One gets an eye for all the bad documents out
- there}
- \end{itemize}
-\end{frame}
-
-\subsection{Resources}
-
-\begin{frame}
- \frametitle{Resources}
- \begin{description}
- \item[Software]{CTAN, i.e.
- \href{www.tug.org}{\texttt{\alert{www.tug.org}}} for the US}
- \item[Help]{Usenet: comp.text.tex}
- \item[Introduction]{l2short available in various languages}
- \item[Literature]{The \LaTeX -companion (\textsc{Mittelbach}
- \textit{et al}, 2004)}
- \item[Symbols]{Comprehensive symbol list from CTAN}
- \end{description}
-\end{frame}
-
-\section{Structure of a \LaTeX\ document}
-
-\begin{frame}
- \frametitle{Boxes and glue}
- \begin{itemize}
- \item{Box (letter) + Glue (space) + Box + ... = larger
- Box (word)}
- \item{Words are treated as boxes to form lines, lines
- paragraphs and paragraphs pages}
- \item{Glue can shrink and expand within limits}
- \end{itemize}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Structure of a \LaTeX -document}
- {\color{darkgreen} \begin{verbatim}
- % -*- TeX:US -*- % for text-editor
- \NeedsTeXFormat{LaTeX2e} % for TeX-system
- \documentclass[options]{style}
-
- \usepackage[latin1]{inputenc}
- \usepackage[T1]{fontenc}
-
- \author{}
- \title{}
- \date{}
-
- \begin{document}
- \maketitle
-
- \chapter{}
- ...
- \end{document}
- \end{verbatim} }
-\end{frame}
-
-\subsection{classes}
-
-\begin{frame}
- \frametitle{Document classes}
- \begin{tabular}{llp{0.5\textwidth}}
- \hline
- \LaTeX & Koma-Script & purpose \\
- \hline
- article & scrartcl & journal papers, short reports \\
- report & scrreprt & longer text with several chapters, e.g. thesis \\
- book & scrbook & books \\
- letter & scrlettr & letters \\
- beamer & & slide presentations \\
- sciposter & & conference posters \\
- \hline
- \end{tabular}
-
- Apart from Koma-Script another alternative style package is
- \alert{memoir}. Also publisher-specific styles (e.g.
- Springer, Elsevier, Teubner etc.
-\end{frame}
-
-\begin{frame}
- \frametitle{Class options}
- \begin{description}
- \item[Font size]{10pt | 11pt | 12pt...}
- \item[Paper size]{a4paper | legalpaper...}
- \item[equations]{fleqn, leqno }
- \item[title]{titlepage | notitlepage}
- \item[columns]{onecolumn | twocolumn}
- \item[printing]{oneside | twoside}
- \end{description}
-\end{frame}
-
-\section{Basic commands}
-
-\subsection{Special characters}
-
-\begin{frame}[fragile]
- \frametitle{Input characters}
- Some characters have special meaning in \TeX , if you need
- them they have to be entered as \TeX -commands:
-
- \vspace{5mm}
- \begin{tabular}{lll}
- $\backslash$~~ & start command & {\color{darkgreen}\verb+$\backslash$+} \\
- & & note: {\color{darkgreen}\verb+\\+} = newline \\
- \$ & toggle math modus & {\color{darkgreen}\verb+\$+} \\
- \& & tabulator & {\color{darkgreen}\verb+\&+} \\
- \% & rest of line comment & {\color{darkgreen}\verb+\%+} \\
- \# & & {\color{darkgreen}\verb+\#+} \\
- \textasciitilde & & {\color{darkgreen}\verb+\textasciitilde+} \\
- \textbar & vert. lines in table & {\color{darkgreen}\verb+\textbar+} \\
- \_ & start subscript & {\color{darkgreen}\verb+\_+} \\
- \textasciicircum & start superscript & {\color{darkgreen}\verb+\textasciicircum+}\\
- \{ \} & command delimiter & {\color{darkgreen}\verb+\{ \}+} \\
- $[\ ]$ & command delimiter & {\color{darkgreen}\verb+$[ ]$+} \\
- `` '' & quotation marks & {\color{darkgreen}\verb+`` ''+} \\
- $> <$ & tabbing & {\color{darkgreen}\verb+$> <$+} \\
- \end{tabular}
-\end{frame}
-
-\subsection{Hypens \& Cie}
-
-\begin{frame}[fragile]
- \frametitle{Hypen, minus ...}
- A horizontal line can mean a lot of things, depending on
- length and thickness:
-
- \vspace{5mm}
- \begin{tabular}{lll}
- O-legs & {\color{darkgreen}\verb+O-legs+} \\
- 10--18 o'clock & {\color{darkgreen}\verb+10--18 o'clock+} \\
- ja -- oder nein? & {\color{darkgreen}\verb+ja -- oder nein?+} \\
- yes---or no? & {\color{darkgreen}\verb+yes---or no?+} \\
- 0, 1 and --1 & {\color{darkgreen}\verb+0, 1 and --1+} \\
- \end{tabular}
-\end{frame}
-
-\section{Structuring text}
-
-\subsection{Sectioning}
-
-\begin{frame}[fragile]
- \frametitle{Sectioning commands}
- \begin{itemize}
- \item{\alert{$\backslash$part\{\}}}
- \item{\alert{$\backslash$chapter\{\}}}
- \item{{\color{darkgreen}$\backslash$section\{\}}}
- \item{{\color{darkgreen}$\backslash$subsection\{\}}}
- \item{{\color{darkgreen}$\backslash$subsubsection\{\}}}
- \item{{\color{darkgreen}$\backslash$paragraph\{\}}}
- \end{itemize}
-\end{frame}
-
-\begin{frame}
- \frametitle{Breaking down large documents}
- Use separate files for, say, each chapter. One main file with
- limbo and commands to include the others:
- \begin{description}
- \item[{\color{darkgreen}$\backslash$input\{\}}]{reads file ``as is''}
- \item[{\color{darkgreen}$\backslash$include\{\}}]{equiv. to
- {\color{darkgreen}$\backslash$clearpage $\backslash$input\{\}
- $\backslash$clearpage}}
- \item[{\color{darkgreen}$\backslash$includeonly\{\}}]{used in limbo to
- limit files {\color{darkgreen}$\backslash$included} }
- \end{description}
-\end{frame}
-
-\begin{frame}
- \frametitle{What is where?}
- \begin{itemize}
- \item{{\color{darkgreen}$\backslash$tableofcontents}}
- \item{{\color{darkgreen}$\backslash$listoffigures}}
- \item{{\color{darkgreen}$\backslash$listoftables}}
- \item{}
- \item{{\color{darkgreen}$\backslash$bibliographystyle\{plainnat\}}}
- \item{{\color{darkgreen}$\backslash$bibliography\{references\}}}
- \item{}
- \item{{\color{darkgreen}$\backslash$printindex}}
- \end{itemize}
-\end{frame}
-
-\subsection{Fonts}
-
-\begin{frame}
- \frametitle{Emphasizing}
- \begin{description}
- \item[{\color{darkgreen}$\backslash$textit\{\}}]{italics, used for
- foreign words, species names etc: \textit{Staph.
- aureus}}
- \item[{\color{darkgreen}$\backslash$textsl\{\}}]{\textsl{slanted}}
- \item[{\color{darkgreen}$\backslash$emph\{\}}]{used for emphasizing:
- this is \emph{not} the case}
- \item[{\color{darkgreen}$\backslash$textsc\{\}}]{small caps, used for
- names of persons: \textsc{Neil Armstrong} was
- the first man on the moon.}
- \item[{\color{darkgreen}$\backslash$textbf\{\}}]{bold face: used to
- make something really \textbf{stick out}.}
- \item[{\color{darkgreen}$\backslash$textsf\{\}}]{sans serif, often used
- as base font on slides. Also used for chemical
- equations.}
- \item[{\color{darkgreen}$\backslash$texttt\{\}}]{typewriter, used for
- computer related material like code or URLs:
- \texttt{http://www.rossmed.edu.dm/}}
- \end{description}
- \alert{Note:} Slides use sanserif font: No small caps, slanted instead of italics!
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Font sizes}
- {\begin{tabbing} \texttt{xfootnotesizexx}\= und dann der Text
- \kill
- {\color{darkgreen}\verb|\tiny|} \> \tiny microscopic font \\
- {\color{darkgreen}\verb|\scriptsize|} \> \scriptsize very tiny font (subscripts)\\
- {\color{darkgreen}\verb|\footnotesize|} \> \footnotesize tiny font (footnotes) \\
- {\color{darkgreen}\verb|\small|} \> \small small font \\
- {\color{darkgreen}\verb|\normalsize|} \> \normalsize normal font \\
- {\color{darkgreen}\verb|\large|} \> \large large font \\
- {\color{darkgreen}\verb|\Large|} \> \Large larger font \\
- {\color{darkgreen}\verb|\LARGE|} \> \LARGE very large font \\[3pt]
- {\color{darkgreen}\verb|\huge|} \> \huge huge font \\[3pt]
- {\color{darkgreen}\verb|\Huge|} \> \Huge very huge font
- \end{tabbing}}
- Note: \alert{not} a command: {\color{darkgreen}\verb+{\small foo bar}+}
-\end{frame}
-
-\subsection{Lists}
-
-\begin{frame}[fragile]
- \frametitle{Simple lists}
- Please believe me:
- \begin{itemize}
- \item{Few swallows can turn winter into summer.}
- \item{Inside it's colder than in the night.
- \begin{itemize}
- \item{In the morning it pulls.}
- \item{At noon he pushes.}
- \item{In the evening she goes.}
- \end{itemize} }
- \item{Every nonsense must find an end.}
- \end{itemize}
- {\color{darkgreen}\small \begin{verbatim}
-Please believe me:
-\begin{itemize}
- \item{Few swallows can turn winter into summer.}
- \item{Inside it's colder than in the night.
- \begin{itemize}
- \item{In the morning it pulls.}
- \item{At noon he pushes.}
- \item{In the evening she goes.}
- \end{itemize} }
- \item{Every nonsense must find an end.}
-\end{itemize}
- \end{verbatim} }
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Descriptive lists}
- Three animals you should know about are:
- \begin{description}
- \item[gnat:]{A small animal, found in the North
- Woods, that causes no end of trouble.}
- \item[gnu:]{A large animal, found in crossword
- puzzles, that causes no end of trouble.}
- \item[armadillo:]{A medium-sized animal, named
- after a medium-sized Texas city which causes no
- end of trouble.}
- \end{description}
- {\color{darkgreen}\small \begin{verbatim}
-\begin{description}
- \item[gnat:]{A small animal, found in the North
- Woods, that causes no end of trouble.}
- \item[gnu:]{A large animal, found in crossword
- puzzles, that causes no end of trouble.}
- \item[armadillo:]{A medium-sized animal, named
- after a medium-sized Texas city which causes
- no end of trouble.}
-\end{description}
-\end{verbatim} }
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Enumerated lists}
- These are the main points:
- \begin{enumerate}
- \item{first item}
- \item{second item}
- \item{third item
- \begin{enumerate}
- \item{first sub-item}
- \item{second sub-item}
- \end{enumerate} }
- \end{enumerate}
- {\color{darkgreen}\small \begin{verbatim}
-These are the main points:
-\begin{enumerate}
- \item{first item}
- \item{second item}
- \item{third item
- \begin{enumerate}
- \item{first sub-item}
- \item{second sub-item}
- \end{enumerate} }
-\end{enumerate}
-\end{verbatim} }
-\end{frame}
-
-\subsection{Tables and stuff}
-
-\begin{frame}[fragile]
- \frametitle{Tabbing}
- \begin{tabbing}
- If \= it's raining \\
- \> then \= put on boots, \\
- \> \> take hat; \\
- \> else \> smile. \\
- Leave house.
- \end{tabbing}
- {\color{darkgreen}\small \begin{verbatim}
-\begin{tabbing}
- If \= it's raining \\
- \> then \= put on boots, \\
- \> \> take hat; \\
- \> else \> smile. \\
- Leave house.
-\end{tabbing}
- \end{verbatim} }
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Tabular}
- \begin{tabular}{|r||c|p{2.5in}|}
- \hline
- \multicolumn{3}{|c|}{\sc GG\&A Hoofed Stock} \\
- \hline
- \hline
- \multicolumn{1}{|c||}{\bf Year} & \bf Price & \multicolumn{1}{c|}{\bf Comments} \\
- \hline
- 1971 & 97--245 & Bad year for farmers in the west. \\ \hline
- 72 & 245--245 & Light trading due to a heavy winter. \\ \hline
- 73 & 245--2001 & No gnus was very good gnus this year. \\ \hline
- \end{tabular}
- {\color{darkgreen}\scriptsize \begin{verbatim}
-\begin{tabular}{|r||c|p{2.5in}|}
- \hline
- \multicolumn{3}{|c|}{\sc GG\&A Hoofed Stock} \\
- \hline
- \hline
- \multicolumn{1}{|c||}{\bf Year} & \bf Price & \multicolumn{1}{c|}{\bf Comments} \\
- \hline
- 1971 & 97--245 & Bad year for farmers in the west. \\
- \hline
- 72 & 245--245 & Light trading due to a heavy winter. \\
- \hline
- 73 & 245--2001 & No gnus was very good gnus this year. \\
- \hline
-\end{tabular}
- \end{verbatim} }
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Table (a float: not used on slides)}
- {\color{darkgreen}\small \begin{verbatim}
-\begin{table}
- \caption{The fastest man in the world:
- Some of his possibilities}
- \label{tab:fast}
- \centering
- \begin{tabular}{|l|c|r|}
- \hline
- Disciplin & distance (m) & time (min) \\
- \hline
- Running & 100 & 5 \\
- Swimming & 50 & 30 \\
- Cycling & 1000 & 20 \\
- \hline
- \end{tabular}
-\end{table}
- \end{verbatim} }
- In the text the table can be referenced with: see table
- {\color{darkgreen}\verb+\ref{tab:fast}+} on page {\color{darkgreen}\verb+\pageref{tab:fast}+}.
-\end{frame}
-
-\subsection{Graphics}
-
-\begin{frame}[fragile]
- \frametitle{Graphics}
- \includegraphics[height=0.3\textheight]{Graphics/Campus3}
-
- {\color{darkgreen}\footnotesize \begin{verbatim}
-\includegraphics[height=0.3\textheight]{Graphics/Campus3}
- \end{verbatim} }
- \begin{itemize}
- \item{Requires \verb+\usepackage{graphicx}+}
- \item{Several file formats possible depending on
- dvi-driver. For pdfLaTeX pdf, png, jpg. }
- \item{Convert other formats e.g. with IrfanView or
- Gimp.}
- \item{other optional arguments like width, angle,
- size}
- \end{itemize}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Figures }
- {\color{darkgreen}\scriptsize \begin{verbatim}
-\begin{figure}
- \caption{A view of our campus. }
- \label{fig:Campus}
- \centering
- \includegraphics[height=0.3\textheight]{Graphics/Campus3}
-\end{figure}
- \end{verbatim} }
- Like table, figure is a floating environment that has no
- meaning in slides. Cross-referencing works as with tables.
-\end{frame}
-
-\section{Maths}
-
-\subsection{Math environments}
-
-\begin{frame}[fragile]
- \frametitle{Text maths}
- if $a$ and $b$ are legs of a
- right-angled triangle and $c$ the hypotenuse, then
- $c^2=a^2+b^2$ (Theorem of Pythagoras).
-
- {\color{darkgreen}\small \begin{verbatim}
-if $a$ and $b$ are legs of a right-angled triangle
-and $c$ the hypotenuse, then $c^2=a^2+b^2$ (Theorem
-of Pythagoras).
- \end{verbatim} }
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Display maths}
- if $a$ and $b$ are legs of a
- right-angled triangle and $c$ the hypotenuse, then
- \begin{equation}
- c^2=a^2+b^2
- \end{equation}
- (Theorem of Pythagoras).
-
- {\color{darkgreen}\small \begin{verbatim}
-if $a$ and $b$ are legs of a right-angled triangle
-and $c$ the hypotenuse, then
-\begin{equation}
- c^2=a^2+b^2
-\end{equation}
-(Theorem of Pythagoras).
- \end{verbatim} }
-\end{frame}
-
-\subsection{Basic math commands}
-
-\begin{frame}[fragile]
- \frametitle{Formulas}
- \begin{displaymath}
- x^5 \qquad \qquad x_1 \qquad \qquad \sqrt{x^2+\sqrt[3]{y}}
- \end{displaymath}
- {\color{darkgreen}\begin{verbatim}
-x^5 x_1 \sqrt{x^2+\sqrt[3]{y}}
- \end{verbatim}}
-
- \begin{displaymath}
- \frac{1}{\frac{x^2+y^2+z^2}{x+y}} \qquad \qquad {n\choose {n-k}}
- \end{displaymath}
- {\color{darkgreen}\begin{verbatim}
-\frac{1}{\frac{x^2+y^2+z^2}{x+y}} {n\choose {n-k}}
- \end{verbatim}}
-
- \begin{displaymath}
- \int \limits_{-\infty}^{\infty}x^3 \qquad \qquad \sum_{i=1}^{n}a_i
- \end{displaymath}
- {\color{darkgreen}\begin{verbatim}
-\int \limits_{-\infty}^{\infty}x^3 \sum_{i=1}^{n}a_i
- \end{verbatim}}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Aligning equations}
- \begin{align}
- f(x) & = \cos x \\
- f'(x) & = -\sin x \\
- \int_{0}^{x} f(y)dy & = \sin x
- \end{align}
- {\color{darkgreen}\small \begin{verbatim}
-\begin{align}
- f(x) & = \cos x \\
- f'(x) & = -\sin x \\
- \int_{0}^{x} f(y)dy & = \sin x
-\end{align}
- \end{verbatim} }
-\end{frame}
-
-\section{Changing the layout}
-
-\subsection{Counters and parameters}
-
-\begin{frame}[fragile]
- \frametitle{Internal Counter + parameters}
- Change parameters:
- {\color{darkgreen}\begin{verbatim}
-\setlength{\parindent}{0pt}
-\setlength{\parskip}{5pt plus 2pt minus 1pt}
-\addtolength{\textwidth}{60pt}
- \end{verbatim}}
-
- Set counters:
- {\color{darkgreen}\begin{verbatim}
-\setcounter{page}{0}
-\addtocounter{page}{10}
- \end{verbatim}}
-
- Output counter content: This is page \thepage .\\
- {\color{darkgreen}\verb+This is page \thepage .+}
-\end{frame}
-
-\subsection{Distances}
-
-\begin{frame}[fragile]
- \frametitle{Horizontal distance}
- Here we have \hspace{2cm} \SI{2}{cm} distance.
-
- {\color{darkgreen}\begin{verbatim}
-Here we have \hspace{2cm} \SI{2}{cm} distance.
- \end{verbatim}}
-
- left\hfill right
- {\color{darkgreen}\begin{verbatim}
-left\hfill right
- \end{verbatim}}
- \begin{tabbing}
- \texttt{xenspace}\qquad \= \kill
- {\color{darkgreen}\verb|\,|} \> very small distance \\
- {\color{darkgreen}\verb|\enspace|} \> as wide as a number \\
- {\color{darkgreen}\verb|\quad|} \> as wide as a letter is heigh \\
- {\color{darkgreen}\verb|\qquad|} \> twice as wide as \verb|\quad| \\
- {\color{darkgreen}\verb|\hfill|} \> a distance that can expand from 0\\
- \> to $\infty$ \\
- \end{tabbing}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Vertical distance}
- Here
-
- \vspace{2cm}
-
- is \SI{2}{cm} distance.
- {\color{darkgreen}\begin{verbatim}
-Here
-
-\vspace{2cm}
-
-is \SI{2}{cm} distance.
- \end{verbatim}}
-
- \begin{tabbing}
- \texttt{xsmallskip}\qquad \= \kill
- {\color{darkgreen}\verb|\smallskip|} \> about $1/4$ line \\
- {\color{darkgreen}\verb|\medskip|} \> about $1/2$ line \\
- {\color{darkgreen}\verb|\bigskip|} \> about 1 line \\
- {\color{darkgreen}\verb|\vfill|} \> distance that can expand from 0\\
- \> to $\infty$ \\
- \end{tabbing}
-\end{frame}
-
-\subsection{Text position}
-
-\begin{frame}[fragile]
- \frametitle{Centering text}
- \begin{center}
- In\\
- the\\
- middle I don't\\
- feel\\
- so marginalized\\
- \end{center}
- {\color{darkgreen}\begin{verbatim}
-\begin{center}
- In\\
- the\\
- middle I don't\\
- feel\\
- so marginalized\\
-\end{center}
- \end{verbatim}}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Flushright text}
- \begin{flushright}
- This is not a political statement
- \end{flushright}
- {\color{darkgreen}\begin{verbatim}
-\begin{flushright}
- This is not a political statement
-\end{flushright}
- \end{verbatim}}
-\end{frame}
-
-\section{Specialties}
-
-\subsection{The index}
-
-\begin{frame}[fragile]
- \frametitle{Indexing commands}
- \begin{description}
- \item[simple]{\color{darkgreen}\verb+gnat\index{gnat}+}
- \item[subtopics]{\color{darkgreen}\verb+gnat\index{gnat!size of}+}
- \item[page range]{\color{darkgreen}\verb+\index{gnat|(}...\index{gnat|)}+}
- \item[reference]{\color{darkgreen}\verb+\index{gnat|see{mosquito}}+}
- \item[font]{\color{darkgreen}\verb+gnat\index{gnat@\textit{gnat}}+}
- \end{description}
- After first \LaTeX\ run, start \alert{makeindx} to sort the index.
-\end{frame}
-
-\subsection{List of acronyms}
-
-\begin{frame}[fragile]
- \frametitle{Acronyms}
- Assume the following list of acronyms:
- {\color{darkgreen}\begin{verbatim}
-\begin{acronym}
- \acro{nfkb}[NF-$\upkappa$B]{nuclear factor
- $\upkappa$B}, protein in gene regulation
-\end{acronym}
- \end{verbatim}}
- This will print as\\
- NF-$\upkappa$B: nuclear factor $\upkappa$B, protein in gene regulation
-
- Then
- \begin{description}
- \item[{\color{darkgreen}$\backslash$acf\{nfkb\}}]{nuclear factor $\upkappa$B (NF-$\upkappa$B)}
- \item[{\color{darkgreen}$\backslash$acs\{nfkb\}}]{NF-$\upkappa$B}
- \item[{\color{darkgreen}$\backslash$acl\{nfkb\}}]{nuclear factor $\upkappa$B}
- \end{description}
-\end{frame}
-
-\subsection{Bibliography}
-
-\begin{frame}[fragile]
- \frametitle{BibTeX}
- Database for literature references in ASCII-format. Can be
- produced from many programs like EndNote, also from PubMed etc.
- {\color{darkgreen}\small \begin{verbatim}
-@article{Alb-76,
- AUTHOR= {W.J. Albery and J.R. Knowles},
- TITLE= {Evolution of enzyme function and the
- development of catalytic efficiency},
- JOURNAL= {Biochemistry},
- VOLUME= {15},
- YEAR= {1976},
- PAGES= {5631-5640},
- ABSTRACT= {Catalytic efficiency constant kcat/Km
- defined },
- DOI= {10.1021/bi00670a032},
- LANGUAGE= {engl}
-}
- \end{verbatim} }
- Similar for books, chapters, reports, thesis etc. In the text
- use {\color{darkgreen}$\backslash$cite\{Alb-76\}}. After first \LaTeX
- -run start \alert{bibtex} to create the bibliography.
-\end{frame}
-
-\subsection{Slide presentations}
-
-\begin{frame}
- \frametitle{Beamer-slides}
- {\color{darkgreen}$\backslash$begin\{frame\} \\
- \hspace{2em}$\backslash$frametitle\{\} \\
- \hspace{2em}... \\
- $\backslash$end\{frame\}}
-\end{frame}
-
-\subsection{TeX-ing}
-
-\begin{frame}
- \frametitle{\TeX ing}
- Always use the sequence:
- \begin{description}
- \item[\LaTeX]{produces the necessary intermediate
- files}
- \item[makeindx]{sort the index}
- \item[bibtex]{create the bibliography}
- \item[\LaTeX]{include bibliography and index, resolve
- cross-references}
- \item[\LaTeX]{resolve remaining cross-references}
- \end{description}
- Note: using pdf\LaTeX\ instead of \LaTeX\ produces pdf-files
- directly.
-\end{frame}
-
-\section{The departmental handout}
-
-\begin{frame}[fragile]
- \frametitle{Packets used in dept. handout}
- \begin{tabular}{lp{0.6\textwidth}}
- makeidx & index generation \\
- natbib & clean handling of bibliography \\
- siunitx & \verb+\SI{}{}, \num{}, \ang{}+ \\
- acronym & administration of acronyms \\
- isotope & \verb+\isotope[13]{C}+ = \isotope[13]{C} \\
- graphicx & inclusion of diagrams \\
- color & colored text \\
- amsmath & math fonts and characters \\
- eufrak & font for arrays + vectors \\
- textcomp & special characters \\
- wasysym,marvosym, & special symbols like \male , \female \\
- chemarrow & various types of arrows for equations \\
- upgreek & \verb+$\upalpha$+ = $\upalpha$ instead of $\alpha$ \\
- thumb & chapter thumbs \\
- isodate & standard conform typesetting of dates \\
- hyperref & use of cross-referencing facilities of pdf\\
- \end{tabular}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Getting consistent output}
- \begin{itemize}
- \item{{\color{darkgreen}$\backslash$chemical\{CH\_2$\backslash$double
- CH$\backslash$single OH\}} = \chemical{CH_2\double
- CH\single OH} }
- \item{{\color{darkgreen}$\backslash$ph} = \ph , similar for
- {\color{darkgreen}$\backslash$pkw, $\backslash$pka, $\backslash$poh,
- $\backslash$pI}}
- \item{{\color{darkgreen}$\backslash$Name\{Maude Leonora Menten\}} =
- \textsc{Maude Leonora Menten}}
- \item{{\color{darkgreen}$\backslash$skalar\{x\}} = $x$, similar for
- {\color{darkgreen}$\backslash$array, $\backslash$vektor,
- $\backslash$set}. Note the list of variables used in
- the appendix.}
- \item{{\color{darkgreen}$\backslash$SI\{1\}\{cm\}} =
- \SI{1}{cm},
- {\color{darkgreen}$\backslash$num\{10000\}} =
- \num{10000},
- {\color{darkgreen}$\backslash$ang\{1;2;3\}} =
- \ang{1;2;3}.}
- \end{itemize}
-\end{frame}
-
-\end{document}