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-rw-r--r--Master/texmf-dist/tex/latex/texshade/texshade.def18
1 files changed, 13 insertions, 5 deletions
diff --git a/Master/texmf-dist/tex/latex/texshade/texshade.def b/Master/texmf-dist/tex/latex/texshade/texshade.def
index be63e0f7c69..a2ab60fb1a6 100644
--- a/Master/texmf-dist/tex/latex/texshade/texshade.def
+++ b/Master/texmf-dist/tex/latex/texshade/texshade.def
@@ -27,23 +27,30 @@
\threshold{50} % Consensus threshold percentage is 50
\residuesperline{999} % As many residues as possible per line
\numberingwidth{9999} % Assign space for 4 digit numbering
-\charstretch{1.15} % Stretch character width 1.15fold
-\linestretch{1} % Do not stretch lines
+\charstretch{1} % Do not stretch character width
+\linestretch{1} % Do not stretch lines vertically
\gapchar{.} % . is printed in sequence gaps
\gaprule{0.3pt} % If a rule is printed in gaps use 0.3 pt
\gapcolors{Black}{White} % Gap symbols appear `Black on White'
\numberingcolor{Black} % Numbering color is `Black'
-\shownumbering{left} % Show sequence numbering on the left
+\shownumbering{right} % Show sequence numbering on the left
\namescolor{Black} % Names' color is `Black'
-\shownames{right} % Show sequence names on the right
+\shownames{left} % Show sequence names on the right
\consensuscolors{Black}{White} % All consensus symbols/letters
{Black}{White} % appear `Black on White'
{Black}{White} %
\showconsensus{bottom} % Show consensus line at bottom with
+\hidesequencelogo % Do not show a sequence logo as consensus
+\showlogoscale{leftright} % Show vertical scale bar if logo is on
+\logostretch{1} % Do not stretch sequence logo vertically
+\hidesubfamilylogo % Do not show a subfamily logo
+\subfamilythreshold{50} % Set subfamily threshold to 50%
+\shownegatives % Show negative values in subfamily logo
+\showrelevance[Black]{*} % Label relevant subfamily deviations
\defconsensus{{}}{*}{!} % Blank =no match; * =match; ! =all match
+\showleadinggaps % Show gap symbols before sequence start
\rulercolor{Black} % Ruler's color is `Black'
\hideruler % Do not show the ruler
-\showleadinggaps % Show gap symbols before sequence start
\rulersteps{10} % Ruler ticks every 10 residues
\legendcolor{Black} % Legend text color is `Black'
\hidelegend % Do not show the legend
@@ -76,6 +83,7 @@
\setseries{legend}{md} % Use normal series for legend texts
\setshape {legend}{up} % Use upright shape for legend texts
\setsize {legend}{normalsize} % Use normal size for legend texts
+\setfamily{ruler}{sf} % Use sans serif font for ruler numbers
\tintdefault{medium} % Use medium tint intensity
\emphdefault{it} % Use italics to emphasize regions
\showonPHDsec{alpha,beta} % Show helices and strands (PHD input)