diff options
Diffstat (limited to 'Master/texmf-dist/tex/latex/texshade/texshade.def')
| -rw-r--r-- | Master/texmf-dist/tex/latex/texshade/texshade.def | 18 |
1 files changed, 13 insertions, 5 deletions
diff --git a/Master/texmf-dist/tex/latex/texshade/texshade.def b/Master/texmf-dist/tex/latex/texshade/texshade.def index be63e0f7c69..a2ab60fb1a6 100644 --- a/Master/texmf-dist/tex/latex/texshade/texshade.def +++ b/Master/texmf-dist/tex/latex/texshade/texshade.def @@ -27,23 +27,30 @@ \threshold{50} % Consensus threshold percentage is 50 \residuesperline{999} % As many residues as possible per line \numberingwidth{9999} % Assign space for 4 digit numbering -\charstretch{1.15} % Stretch character width 1.15fold -\linestretch{1} % Do not stretch lines +\charstretch{1} % Do not stretch character width +\linestretch{1} % Do not stretch lines vertically \gapchar{.} % . is printed in sequence gaps \gaprule{0.3pt} % If a rule is printed in gaps use 0.3 pt \gapcolors{Black}{White} % Gap symbols appear `Black on White' \numberingcolor{Black} % Numbering color is `Black' -\shownumbering{left} % Show sequence numbering on the left +\shownumbering{right} % Show sequence numbering on the left \namescolor{Black} % Names' color is `Black' -\shownames{right} % Show sequence names on the right +\shownames{left} % Show sequence names on the right \consensuscolors{Black}{White} % All consensus symbols/letters {Black}{White} % appear `Black on White' {Black}{White} % \showconsensus{bottom} % Show consensus line at bottom with +\hidesequencelogo % Do not show a sequence logo as consensus +\showlogoscale{leftright} % Show vertical scale bar if logo is on +\logostretch{1} % Do not stretch sequence logo vertically +\hidesubfamilylogo % Do not show a subfamily logo +\subfamilythreshold{50} % Set subfamily threshold to 50% +\shownegatives % Show negative values in subfamily logo +\showrelevance[Black]{*} % Label relevant subfamily deviations \defconsensus{{}}{*}{!} % Blank =no match; * =match; ! =all match +\showleadinggaps % Show gap symbols before sequence start \rulercolor{Black} % Ruler's color is `Black' \hideruler % Do not show the ruler -\showleadinggaps % Show gap symbols before sequence start \rulersteps{10} % Ruler ticks every 10 residues \legendcolor{Black} % Legend text color is `Black' \hidelegend % Do not show the legend @@ -76,6 +83,7 @@ \setseries{legend}{md} % Use normal series for legend texts \setshape {legend}{up} % Use upright shape for legend texts \setsize {legend}{normalsize} % Use normal size for legend texts +\setfamily{ruler}{sf} % Use sans serif font for ruler numbers \tintdefault{medium} % Use medium tint intensity \emphdefault{it} % Use italics to emphasize regions \showonPHDsec{alpha,beta} % Show helices and strands (PHD input) |