diff options
Diffstat (limited to 'Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex')
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex | 72 |
1 files changed, 36 insertions, 36 deletions
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex index 45be0f4ad43..14b31722ee9 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex @@ -1,5 +1,5 @@ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Molecular Coding Format manual by Akira Yamaji 2015.9.14 +% Molecular Coding Format manual by Akira Yamaji 2015.9.16 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \documentclass[a4paper]{article} \usepackage[dvipdfmx]{graphicx} @@ -34,7 +34,7 @@ \noindent% \begin{picture}(180,0) \put(20,9){{\LARGE\bf Molecular Coding Format manual}\hspace{10mm} - by Akira Yamaji 2015.9.14} + by Akira Yamaji 2015.9.16} \end{picture}\vspace{-4.2mm}\\ %---------------------------------------------------------------------------- \begin{minipage}[t][38mm]{100mm} @@ -52,13 +52,13 @@ bold arrow is default angle and position \begin{minipage}[t][38mm]{100mm} \MCFtitle{Chain (2)} \begin{verbatim} -!,!!: take 60 or -60 depend on +!,: take 60 or -60 depend on current angle and enviroment !6 (!!6) - ** !!6: !,!,!,!,!,! - !6: {,!!6,} + ** !6: !,!,!,!,!,! + !!6: {,!6,} \end{verbatim} \end{minipage} \MCFstructure @@ -71,8 +71,8 @@ six membered ring ?6 (??6) - ** ??6 :^^-120,60,60,60,60,60,&(-5) - ?6 : {,??6,} + ** ?6 :^^-120,60,60,60,60,60,&(-5) + ??6 : {,?6,} \end{verbatim} \end{minipage} @@ -124,7 +124,7 @@ six membered ring \begin{verbatim} Bn`length : change bond length at Bn - ^^30,!2,!2`1.2,! + ^^30,!2,!2`1.2,!2 \end{verbatim} \end{minipage} \MCFstructure @@ -135,7 +135,7 @@ Bn`length : change bond length at Bn \begin{verbatim} ``length : change all bond length after - ^^30,!2,``1.2,!2,! + ^^30,!2,``1.2,!3 \end{verbatim} \end{minipage} \MCFstructure @@ -146,7 +146,7 @@ Bn`length : change bond length at Bn \begin{verbatim} ?n`length : change ring length - ^^30,?6,3\,?6`1.2,4=??6 + ^^30,?6,3\,|,?6`1.2,4=??6 \end{verbatim} \end{minipage} \MCFstructure @@ -181,9 +181,8 @@ An(n:numeric): atom number \MCFtitle{Change atom (3)} \begin{verbatim} 2:N : change A2 C to N -??6 do not make brock - ?6,4\,??6,2:N + ?6,4\,?6,2:N \end{verbatim} \end{minipage} \MCFstructure @@ -194,8 +193,9 @@ An(n:numeric): atom number \begin{verbatim} 2:N : change A2(brock address) C to N -?6,4\,?6,2:N +?6,4\,|,?6,2:N +| : divide brock \end{verbatim} \end{minipage} \MCFstructure @@ -206,7 +206,7 @@ An(n:numeric): atom number \begin{verbatim} #2:N : change A#2 C to N - ?6,4\,?6,#2:N + ?6,4\,|,?6,#2:N \end{verbatim} \end{minipage} \MCFstructure @@ -240,8 +240,8 @@ Bn(n:numeric): bond number \MCFtitle{Fuse multi ring (attached 1 bond)} \begin{verbatim} -?6,$(3,3)?6 => OK ?6,$(3,3)??6 => NG -?6,$(3,9)?6 => NG ?6,$(3,9)??6 => OK +?6,$(3,3)?6 => NG ?6,$(3,3)??6 => OK +?6,$(3,9)?6 => OK ?6,$(3,9)??6 => NG ?6,$(-4,-3)?6 => OK ?6,$(-4,-3)??6 => OK ?6,$(#3,#9)?6 => OK ?6,$(#3,#9)??6 => OK @@ -253,13 +253,13 @@ Bn(n:numeric): bond number \begin{minipage}[t][38mm]{100mm} \MCFtitle{Fuse ring (attached 2 bond)} \begin{verbatim} -(4,11)=??6[4] : fuse 4/6 ring to B11..B4 -(4,11)=??5[3] : fuse 3/5 ring to B11..B4 -(4,11)=??4[2] : fuse 2/4 ring to B11..B4 +(4,11)=?6[4] : fuse 4/6 ring to B11..B4 +(4,11)=?5[3] : fuse 3/5 ring to B11..B4 +(4,11)=?4[2] : fuse 2/4 ring to B11..B4 - MCd(1,.7)( 0,0)(^^30,?6,$(3)??6,(11,4)=??6[4]) - MCd(1,.6)(.5,1)(^^30,?6,$(3)??6,(11,4)=??5[3]) - MCd(1,.6)( 1,0)(^^30,?6,$(3)??6,(11,4)=??4[2]) + MCd(1,.7)( 0,0)(^^30,?6,$(3)?6,(11,4)=?6[4]) + MCd(1,.6)(.5,1)(^^30,?6,$(3)?6,(11,4)=?5[3]) + MCd(1,.6)( 1,0)(^^30,?6,$(3)?6,(11,4)=?4[2]) \end{verbatim} \end{minipage} \MCFstructure @@ -268,13 +268,13 @@ Bn(n:numeric): bond number \begin{minipage}[t][38mm]{100mm} \MCFtitle{Fuse ring (attached 3,4 bond)} \begin{verbatim} -(16,4)=??6[3] : fuse 3/6 ring to B16..B4 -(16,4)=??5[2] : fuse 2/5 ring to B16..B4 -(21,3)=??6[2] : fuse 2/6 ring to B21..B3 +(16,4)=?6[3] : fuse 3/6 ring to B16..B4 +(16,4)=?5[2] : fuse 2/5 ring to B16..B4 +(21,3)=?6[2] : fuse 2/6 ring to B21..B3 -MCd(1,.55)(0,0)(?6,$(3,10)??6,(16,4)=??6[3]) -MCd(1,.55)(.43,1)(?6,$(3,10)??6,(16,4)=??5[2]) -MCd(1,.53)(1,0)(^^30,?6,$(2,10,15)??6,(21,3)=??6[2]) +MCd(1,.55)(0,0)(?6,$(3,10)?6,(16,4)=?6[3]) +MCd(1,.55)(.43,1)(?6,$(3,10)?6,(16,4)=?5[2]) +MCd(1,.53)(1,0)(^^30,?6,$(2,10,15)?6,(21,3)=?6[2]) \end{verbatim} \end{minipage} \MCFstructure @@ -519,7 +519,7 @@ Insert user defined substructure \begin{verbatim} ^^45, - ?4,2:N,2=??5,-1:S, + ?4,2:N,2=?5,-1:S, @(3^45,4^-45)/*H,1://O^15, 5:/*COOH^-18,@(6^35,6^-35)/Me, 4\^75,NH,!,//O,!,NH,!,Ph @@ -533,7 +533,7 @@ Insert user defined substructure \begin{verbatim} ^^30, - ?6,$(-4,-2)??6,-4=??5,7=dl, + ?6,$(-4,-2)?6,-4=?5,7=dl, 1:*/OH,@(4,12)*/Me^60,9:*/H^60, 10:/*H^180,@(11,-1)/*H^-60, -1\^17,/*Me,!4,/Me,!, @@ -547,9 +547,9 @@ Insert user defined substructure \begin{verbatim} ^^30, - Ph,3=??6, + Ph,3=?6, 7:O,@(1,2,5)/Me,8:/*Me^60,6:/OH, - 8\,!12,@(4,8)/*Me,12:/Me + 8\,|,!12,@(4,8)/*Me,12:/Me \end{verbatim} \end{minipage} \MCFstructure @@ -560,7 +560,7 @@ Insert user defined substructure \begin{verbatim} ^^30, - ?6,-4=??5,$(3,8)dl,@(2,6,7,9)N, + ?6,-4=?5,$(3,8)dl,@(2,6,7,9)N, @(2,6,9)/Me,@(1,5)//O \end{verbatim} \end{minipage} @@ -572,7 +572,7 @@ Insert user defined substructure \begin{verbatim} ^^30, - Ph,-4=??6,-2=??6,6=??5,(9,12)=??5[3], + Ph,-4=?6,-2=?6,6=?5,(9,12)=?5[3], 13=dl,8:N,@(15,17)O, 9:/*H^180,10:*/H^60,13:*/OH,14:/*OH \end{verbatim} @@ -585,7 +585,7 @@ Insert user defined substructure \begin{verbatim} ^^12, - ?6`1.3,3=??5,9=??7,12\^160`1.6,&8, + ?6`1.3,3=?5,9=?7,12\^160`1.6,&8, 4\^155~zf`1.2,O,55,//O^180`1,&2~zb, 5=dl,11=wf,13=wb,7:/COOH,11://Me,1:*/OH, 12:/*OH,2:*/Me,@(3^-60,9^60)*/H @@ -601,7 +601,7 @@ Insert user defined substructure font_wd#:=30mm#; %<==font width font_ht#:=20mm#; %<==font height sw_font_frame:=1; - MCf(^^30,?6,-4=??5,$(3,8)dl,@(2,6,7,9)N, + MCf(^^30,?6,-4=?5,$(3,8)dl,@(2,6,7,9)N, @(2,6,9)/Me,@(1,5)//O) endfont \end{verbatim} |