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authorKarl Berry <karl@freefriends.org>2024-01-10 20:44:24 +0000
committerKarl Berry <karl@freefriends.org>2024-01-10 20:44:24 +0000
commit2f3c0886ac4aabc4e8ee65183be257ffe9d21e38 (patch)
tree84f929e554d78f044e089bd2db8a60dd0659bbdb /Master/texmf-dist/tex/latex
parent20293d1d4fad93b4e31a66c1814c4be459b8b526 (diff)
texshade (10jan24)
git-svn-id: svn://tug.org/texlive/trunk@69371 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Master/texmf-dist/tex/latex')
-rw-r--r--Master/texmf-dist/tex/latex/texshade/texshade.sty55
1 files changed, 44 insertions, 11 deletions
diff --git a/Master/texmf-dist/tex/latex/texshade/texshade.sty b/Master/texmf-dist/tex/latex/texshade/texshade.sty
index c471186e8dd..77942c25737 100644
--- a/Master/texmf-dist/tex/latex/texshade/texshade.sty
+++ b/Master/texmf-dist/tex/latex/texshade/texshade.sty
@@ -13,8 +13,8 @@
%%
\NeedsTeXFormat{LaTeX2e}
-\ProvidesPackage{texshade}[2023/06/04 LaTeX TeXshade (v1.27)]
-\message{Package `texshade', Version 1.27 of 2024/01/06.}
+\ProvidesPackage{texshade}[2024/01/10 LaTeX TeXshade (v1.28)]
+\message{Package `texshade', Version 1.28 of 2024/01/10}
\PassOptionsToPackage{dvips}{color}
\PassOptionsToPackage{dvips}{graphicx}
@@ -158,6 +158,7 @@
\xdef\rulername@top{} \xdef\rulername@bottom{}
\xdef\rulernamecolor@top{n} \xdef\rulernamecolor@bottom{n}
\xdef\rulername@family{n} \xdef\rulername@size{n}
+\xdef\exp@rt@pymol{n}
\expandafter\def\csname fg@textcolor/\endcsname{White}
\expandafter\def\csname fg@color/\endcsname{White}
\expandafter\def\csname func@style/\endcsname{\csname textup\endcsname}
@@ -1639,6 +1640,10 @@
\definecolor{TC8} {cmyk}{0,0.8,1,0}
\definecolor{TC9} {cmyk}{0,0.875,1,0}
\definecolor{TC99} {cmyk}{0,0,0,0}
+\definecolor{BrewerC} {cmyk}{0.35,0.07,0,0}
+\definecolor{BrewerG} {cmyk}{0.90,0.30,0,0}
+\definecolor{BrewerT} {cmyk}{0.30,0,0.45,0}
+\definecolor{BrewerA} {cmyk}{0.80,0,1,0}
\definecolor{LightGreenYellow} {cmyk}{0.08,0,0.35,0}
\definecolor{LightYellow} {cmyk}{0,0,0.50,0}
\definecolor{LightGoldenrod} {cmyk}{0,0.05,0.42,0}
@@ -2919,8 +2924,15 @@
\funcgroup{18-19 eV (MY)}{MY}{White}{BlueRed80}{upper}{up}
\funcgroup{17-18 eV (W)}{W}{White}{BlueRed100}{upper}{up}
\else
+ \xdef\second@{DNA}
+ \ifx\temp@\second@
+ \funcgroup{C}{Cc}{Black}{BrewerC}{upper}{up}
+ \funcgroup{G}{Gg}{White}{BrewerG}{upper}{up}
+ \funcgroup{A}{Aa}{Black}{BrewerA}{upper}{up}
+ \funcgroup{T, U}{TtUu}{Black}{BrewerT}{upper}{up}
+ \else
\message{<Unknown shading mode - clearing `funcgroups'>}
- \fi\fi\fi\fi\fi\fi\fi\fi
+ \fi\fi\fi\fi\fi\fi\fi\fi\fi
}
\def\shadeallresidues{\all@fshadetrue}
\def\get@fromstack#1;#2;#3;#4;#5@{%
@@ -6127,9 +6139,7 @@
\else
\xdef\first@{functional}
\ifx\first@\last@
- \if\seq@type N \message{<No functional shading on DNA sequences>}
- \else \simmodefalse \funcmodetrue \func@shading{#1}
- \xdef\seq@type{P} \xdef\prefix@{pep} \fi
+ \simmodefalse \funcmodetrue \func@shading{#1}
\else
\xdef\first@{T-Coffee}
\ifx\first@\last@
@@ -6443,7 +6453,16 @@
\logocolor{CFH}{BlueRed60}
\logocolor{MY}{BlueRed80}
\logocolor{W}{BlueRed100}
- \fi\fi\fi\fi\fi\fi\fi\fi
+ \else
+ \xdef\second@{DNA}
+ \ifx\first@\second@
+ \clearlogocolors
+ \logocolor{A}{BrewerA}
+ \logocolor{C}{BrewerC}
+ \logocolor{G}{BrewerG}
+ \logocolor{T}{BrewerT}
+ \logocolor{U}{BrewerT}
+ \fi\fi\fi\fi\fi\fi\fi\fi\fi
}
\newcommand\findsubfamily[2][n]{%
\xdef\first@{#1}
@@ -7750,13 +7769,15 @@
\ifx\temp@\first@ \xdef\tr@nstextstyle{4}\fi
}
-\newcommand\exportconsensus[2][export.txt]{%
+\newcommand\exportconsensus[3][chimera]{%
\ifx\exp@rt\n@
+ \xdef\first@{#1}\xdef\second@{pymol}
+ \ifx\first@\second@\xdef\exp@rt@pymol{y}\fi
\xdef\first@{#2 @} \expandafter\check@letter\first@
\xdef\first@{#2} \ifletter \get@name@number \fi
\xdef\exp@rt@num{\first@}
\xdef\exp@rt{y}
- \immediate\openout\exp@rtfile = #1
+ \immediate\openout\exp@rtfile = #3
\fi
}
@@ -10889,7 +10910,12 @@
\multiply\outerloopcount by 5
\ifnum\outerloopcount<5\relax\outerloopcount=5\fi
\xdef\seventh@{n}
- \immediate\write\exp@rtfile{\string color col\the\outerloopcount, resi \sixth@}
+ \ifx\exp@rt@pymol\y@
+ \immediate\write\exp@rtfile{\string color col\the\outerloopcount, resi \sixth@}
+ \else
+ \immediate\write\exp@rtfile{\string setattr a color col\the\outerloopcount \space :\sixth@}
+ \immediate\write\exp@rtfile{\string setattr r ribbonColor col\the\outerloopcount \space :\sixth@}
+ \fi
\fi
\fi
@@ -10993,10 +11019,17 @@
\fi}
\def\prep@reexp@rtfile{
+ \def\get@c@nsc@l[##1,##2,##3]{\xdef\first@{##1} \xdef\second@{##2} \xdef\third@{##3}}
\loopcount=0
\loop
\advance\loopcount by 5
- \immediate\write\exp@rtfile{\string set_color col\the\loopcount, \csname\c@nsc@l\the\loopcount\endcsname}
+ \ifx\exp@rt@pymol\y@
+ \immediate\write\exp@rtfile{\string set_color col\the\loopcount, \csname\c@nsc@l\the\loopcount\endcsname}
+ \else
+ \xdef\first@{\csname\c@nsc@l\the\loopcount\endcsname}
+ \expandafter\get@c@nsc@l\first@
+ \immediate\write\exp@rtfile{\string colordef col\the\loopcount \space\first@ \space\second@ \space\third@}
+ \fi
\ifnum\loopcount>95\else\repeat
}