diff options
author | Karl Berry <karl@freefriends.org> | 2021-05-05 19:35:28 +0000 |
---|---|---|
committer | Karl Berry <karl@freefriends.org> | 2021-05-05 19:35:28 +0000 |
commit | 719bdad66e817a3a745d2e86e8d56d75e07fe68b (patch) | |
tree | ee74c6ce4a193d72389fdc8e3cae43a70aaee1af /Master/texmf-dist/doc | |
parent | ed1e81738530cebab06a7f5f22509a8c30485e02 (diff) |
mcf2graph (5may21)
git-svn-id: svn://tug.org/texlive/trunk@59086 c570f23f-e606-0410-a88d-b1316a301751
Diffstat (limited to 'Master/texmf-dist/doc')
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG | 9 | ||||
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/README | 6 | ||||
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_data_base.mcf | 166 | ||||
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf | 13 | ||||
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf | bin | 319877 -> 320335 bytes | |||
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex | 10 | ||||
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf | 52 | ||||
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf | bin | 375534 -> 378071 bytes | |||
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex | 79 | ||||
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf | bin | 195927 -> 184190 bytes | |||
-rw-r--r-- | Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex | 241 |
11 files changed, 313 insertions, 263 deletions
diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG b/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG index 79a088b7dbf..3283706b9c2 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG +++ b/Master/texmf-dist/doc/metapost/mcf2graph/CHANGELOG @@ -1,6 +1,13 @@ ******************************************************************************* - Changelog of mcf2graph software package by Akira Yamaji 2021-04-18 + Changelog of mcf2graph software package by Akira Yamaji 2021-05-05 ******************************************************************************* +[ver. 4.64 / 2021-05-05] + -add parameter for sw_output + Mcode : output MCF aux files + Mcode_t : output 'temp-mc.aux' + Info_t : output 'temp-info.aux' + -update MCF manual,example + [ver. 4.63 / 2021-04-18] -add option parameter sw_output sw_calc =1 => sw_output=None diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/README b/Master/texmf-dist/doc/metapost/mcf2graph/README index 44b86eb694a..230ffee1ba0 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/README +++ b/Master/texmf-dist/doc/metapost/mcf2graph/README @@ -1,7 +1,7 @@ ******************************************************************************** mcf2graph : Convert Molecular Coding Format to graphics with METAFONT/METAPOST Author : Akira Yamaji - version : 4.63 2021-04-18 + version : 4.64 2021-05-05 E-mail : mcf2graph@gmail.com Located at : http://www.ctan.org/pkg/mcf2graph ******************************************************************************** @@ -16,7 +16,7 @@ 2. The distribution of software ( 1) README This file - ( 2) CHANGELOG Changelog file of mcf2graph + ( 2) CHANGELOG Changelog file of mcf2graph ( 3) mcf2graph.mf Main macro of Metafont / Metapost ( 4) mcf_data_base.mcf Molecular data base file ( 5) mcf_setup.sty Style file for aux file input @@ -25,7 +25,7 @@ use mps file for final print make file 'mcf_man_soc-***.mps' before typeset >mpost mcf_man_soc.mf - ( 7) mcf_man_soc.mf Molecular difinition file for mcf_manual.tex + ( 7) mcf_man_soc.mf Molecular definition file for mcf_manual.tex ( 8) mcf_manual.pdf PDF of (4) (used pdftex(LaTeX),makeindex) ( 9) mcf_example.tex LaTeX example make file 'mcf_exa_soc-info.aux' before typeset diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_data_base.mcf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_data_base.mcf index 015712b2dfc..726ac905782 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_data_base.mcf +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_data_base.mcf @@ -1,5 +1,5 @@ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% molecular data base file mcf_data_base.mcf by Akira Yamaji 2021.04.18 +% molecular data base file mcf_data_base.mcf by Akira Yamaji 2021.05.05 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % tag1:var1;tag2:var2;tag3:var3 ..... % first character of line '%' comment out @@ -89,13 +89,13 @@ Cat:biological;EN:Capsaicin;MW:305.418 Cat:biological;EN:Thiamine;MW:300.81 + <30,Ph,4:/NH2,@3,\`1,!,<-12,?5,{-1,-4}=dl,{1,5,8}:N,11:S,{6,9}:/_, - @-3,\,!2,OH,8:p_^72,@(6.7,1.5),Cl,n_^15 + @-3,\,!2,OH,8:p_^72,@(6.7,1.5),Cl,n_^15 +------------------------------------------------------------------------------ Cat:biological;EN:Gibberellin A3;MW:346.379 + <18,?5,3=?7,5=?6[12],@8,160`1.3,&3,13=dl,6=wf,8=wb, - @5,40~zf`1,O,50,//O^180,&14~zb, - 2:/COOH,7://_,13:*/OH,8:/*OH,14:*/_,{1,4}:*/H^60 + @5,40~zf`1,O,50,//O^180,&14~zb, + 2:/COOH,7://_,13:*/OH,8:/*OH,14:*/_,{1,4}:*/H^60 +------------------------------------------------------------------------------ Cat:biological;EN:Cholesterol;MW:386.664 + @@ -105,7 +105,7 @@ Cat:biological;EN:Cholesterol;MW:386.664 Cat:biological;EN:Riboflavin;MW:376.37 + <30,Ph,3=?6,9=?6,{8,16}=dl,{7,10,14}:N,12:NH,{11,13}://O,{1,6}:/_, - @10,\`1.2,!,*/OH,!,/*OH,!,*/OH,!2,OH + @10,\`1.2,!,*/OH,!,/*OH,!,*/OH,!2,OH +------------------------------------------------------------------------------ Cat:biological;EN:Resveratrol;MW:228.24 + @@ -122,7 +122,7 @@ Cat:synthetic;EN:Hexaphenylbenzene;MW:534.6876 Cat:synthetic;EN:Kekulene;MW:600.7 + <30,Ph,{3,-2,-3,-2,-3,-2,-3,-2,-3,-2}=?6,(-3,6)=?6[3],@-4,&6, -{8,12,14,16,18,22,24,26,28,32,34,36,38,42,44,46,48,52,54,56,58}=dl + {8,12,14,16,18,22,24,26,28,32,34,36,38,42,44,46,48,52,54,56,58}=dl +------------------------------------------------------------------------------ Cat:synthetic;EN:18-Crown-6;MW:264.32 + @@ -131,13 +131,13 @@ Cat:synthetic;EN:18-Crown-6;MW:264.32 Cat:synthetic;EN:Porphyrin;MW:310.4 + <9,#1,?5,@3,\,54,?5,@-2,\,54,?5,@-2,\,54,?5,@-2,\,&5,##, -{1,4,6,8,10,14,16,18,21,23,27}=dl,{4,17}:N,{11,23}:NH + {1,4,6,8,10,14,16,18,21,23,27}=dl,{4,17}:N,{11,23}:NH +------------------------------------------------------------------------------ Cat:synthetic;EN:Sulflower;MW:448.69 + <67.5,?8,{1,3,5,7}=?5,@11,30`1.15,&12,@14,30`1.15,&15, -@17,30`1.15,&18,@20,30`1.15,&9,{9,12,13,16,17,20,21,24}=dl, -{10,13,16,19,21,22,23,24}:S + @17,30`1.15,&18,@20,30`1.15,&9,{9,12,13,16,17,20,21,24}=dl, + {10,13,16,19,21,22,23,24}:S +------------------------------------------------------------------------------ Cat:synthetic;EN:Arsphenamine x5;MW:915.2 + @@ -178,7 +178,7 @@ Cat:pesticide;EN:pp-DDT;MW:354.49 Cat:pesticide;EN:Endrin;MW:380.91 + <30,?6`1.3,3=?6,6=dl,9=?3,-1:O, - @2,210~wf`1.5,&5~wb,@7,210~zf`1.5,&10~zb,{1,2,5,6,12^-210,12^-150}:/Cl + @2,210~wf`1.5,&5~wb,@7,210~zf`1.5,&10~zb,{1,2,5,6,12^-210,12^-150}:/Cl +------------------------------------------------------------------------------ Cat:pesticide;EN:Acrinathrin;MW:541.45 + @@ -192,7 +192,7 @@ Cat:pesticide;EN:Cafenstrole;MW:350.4 Cat:pesticide;EN:Carfentrazone-ethyl;MW:412.19 + <30,Ph,4:/F,6:/Cl,@1,\,!,/Cl,!,//O,!,O,!2, - @3,\,|,?5,4=dl,{1,3,5}:N,-4://O,-3:/CF2,-2:/_ + @3,\,|,?5,4=dl,{1,3,5}:N,-4://O,-3:/CF2,-2:/_ +------------------------------------------------------------------------------ Cat:pesticide;EN:Carboxin;MW:235.301 + @@ -258,7 +258,7 @@ Cat:pesticide;EN:Fenitrothion;MW:277.23 Cat:pesticide;EN:Fipronil;MW:437.2 + <30,Ph,{2,4}:/Cl,6:/CF3,@3,\,|,?5,{2,4}=dl,{1,2}:N,3:/CN,5:/NH2, - @-2,\,S,//O,!,CF3 + @-2,\,S,//O,!,CF3 +------------------------------------------------------------------------------ Cat:pesticide;EN:Flumequine;MW:261.225 + @@ -343,7 +343,7 @@ Cat:pesticide;EN:Tetraconazole;MW:372.145 Cat:pesticide;EN:Endosulfan;MW:406.904 + <26,?7,7=?6[13],@11,208~wf`1.45,&8~wb,10=dl,{3,5}:O,4:S,4://O, - {8,9,10,11,12^-210,12^-150}:/Cl + {8,9,10,11,12^-210,12^-150}:/Cl +------------------------------------------------------------------------------ Cat:pesticide;EN:Uniconazole-P;MW:291.779 + @@ -417,13 +417,13 @@ Cat:antibiotics;EN:Oxacillin;MW:401.4363 Cat:antibiotics;EN:Cloxacillin;MW:435.8813 + <45,?4,-3=?5,2:N,7:S,3^45:/*H,1://O^15,5:/*COOH^-18,6:??, - @4,*\^15,NH,!,//O,!,<-24,?5,{-2,-5}=dl,-2:N,-3:O,-4:/_,@-1,\^-24,Ph,-5:/Cl + @4,*\^15,NH,!,//O,!,<-24,?5,{-2,-5}=dl,-2:N,-3:O,-4:/_,@-1,\^-24,Ph,-5:/Cl +------------------------------------------------------------------------------ Cat:antibiotics;EN:Dicloxacillin;MW:470.3264 + <45,?4,-3=?5,2:N,7:S,3^45:/*H,1://O^15,5:/*COOH^-18,6:??, - @4,*\^15,NH,!,//O,!,<-24,?5,{-2,-5}=dl,-2:N,-3:O,-4:/_, - @-1,\^-24,Ph,{-1,-5}:/Cl + @4,*\^15,NH,!,//O,!,<-24,?5,{-2,-5}=dl,-2:N,-3:O,-4:/_, + @-1,\^-24,Ph,{-1,-5}:/Cl +------------------------------------------------------------------------------ Cat:antibiotics;EN:Cefalexin;MW:347.3889 + @@ -433,60 +433,60 @@ Cat:antibiotics;EN:Cefalexin;MW:347.3889 Cat:antibiotics;EN:Cefalonium;MW:458.5107 + <45,?4,-3=?6,-4=dl,2:N,8:S,3^45:/*H,1://O^15,@5,\*,//O,!,O,n_^40, - @4,*\^15,NH,!,//O,!2,?5,{-1,-3}=dl,-4:S, - @6,\,!,|,Ph,1:N,1:p_^180,@4,\,//O,!,NH2 + @4,*\^15,NH,!,//O,!2,?5,{-1,-3}=dl,-4:S, + @6,\,!,|,Ph,1:N,1:p_^180,@4,\,//O,!,NH2 +------------------------------------------------------------------------------ Cat:antibiotics;EN:Cefazorin;MW:454.51 + <45,?4,-3=?6,-4=dl,2:N,8:S,3^45:/*H,1://O^15,5:/*COOH, - @4,*\^15,NH,!,//O,!2,?5,{-2,-4}=dl,{-1,-2,-3,-5}:N, - @6,\,!,S,!,?5,{-3,-5}=dl,-1:S,-2:/_,{-3,-4}:N + @4,*\^15,NH,!,//O,!2,?5,{-2,-4}=dl,{-1,-2,-3,-5}:N, + @6,\,!,S,!,?5,{-3,-5}=dl,-1:S,-2:/_,{-3,-4}:N +------------------------------------------------------------------------------ Cat:antibiotics;EN:Cefquinome;MW:528.6 + <45,?4,-3=?6,-4=dl,2:N,8:S,3^45:/*H,1://O^15,@5,\*,//O,!,O,n_^40, - @4,*\^15,NH,!,//O,!,//'(N,!,O,!),!,?5,{-2,-5}=dl,-3:S,-1:N,-2:/NH2, - @6,\,!,Ph,-2=?6,-10:N,-10:p_^180 + @4,*\^15,NH,!,//O,!,//'(N,!,O,!),!,?5,{-2,-5}=dl,-3:S,-1:N,-2:/NH2, + @6,\,!,Ph,-2=?6,-10:N,-10:p_^180 +------------------------------------------------------------------------------ Cat:antibiotics;EN:Ceftiofur;MW:523.5626 + <45,?4,-3=?6,-4=dl,2:N,8:S,3^45:/*H,1://O^15,5:/*COOH, - @4,*\^15,NH,!,//O,!,//'(N,!,O,!),!,?5,{-2,-5}=dl,-3:S,-1:N,-2:/NH2, - @6,\,!,S,!,//O,!,?5,{-1,-3}=dl,-4:O + @4,*\^15,NH,!,//O,!,//'(N,!,O,!),!,?5,{-2,-5}=dl,-3:S,-1:N,-2:/NH2, + @6,\,!,S,!,//O,!,?5,{-1,-3}=dl,-4:O +------------------------------------------------------------------------------ Cat:antibiotics;EN:Cefuroxime;MW:424.3852 + <45,?4,-3=?6,-4=dl,2:N,8:S,3^45:/*H,1://O^15,5:/*COOH, - @4,*\^15,NH,!,//O,!,//'(N,!,O,!),!,?5,{-1,-3}=dl,-4:O,@6,\,!,O,!,//O,!,NH2 + @4,*\^15,NH,!,//O,!,//'(N,!,O,!),!,?5,{-1,-3}=dl,-4:O,@6,\,!,O,!,//O,!,NH2 +------------------------------------------------------------------------------ Cat:antibiotics;EN:Apramycin;MW:539.58 + <30,?6,-4=?6,{2,10}:O,@1,\*,O,60~zb,?6,@9,\*,O,-60~zb,?6,-5:O, - {7,13,-2}:*/OH,{14,-1}:/*OH,{15,17}:*/NH2,{6,-3}:/*NH2,8:*/NH!>vt, - -4:*/!OH,3:/*H^-60`.75,4:*/H^60`.75 + {7,13,-2}:*/OH,{14,-1}:/*OH,{15,17}:*/NH2,{6,-3}:/*NH2,8:*/NH!>vt, + -4:*/!OH,3:/*H^-60`.75,4:*/H^60`.75 +------------------------------------------------------------------------------ Cat:antibiotics;EN:Gentamycin;MW:477.596 + <-30,?6,@1,\*,O,0~zb,?6,-5:O,@5,\*,O,0~zb,?6,-5:O,{2,4}:*/NH2,20:/*NH2,6:*/OH, - 11:*/OH^-35,11:/*_^35,12:*/NH!,13:/*OH,17:/'(*/_,!NH!) + 11:*/OH^-35,11:/*_^35,12:*/NH!,13:/*OH,17:/'(*/_,!NH!) +------------------------------------------------------------------------------ Cat:antibiotics;EN:Kanamycin;MW:484.499 + <-30,?6,@1,\*,O,0~zb,?6,-5:O,@5,\,O,0,?6,-5:O, - {2,4,12}:*/NH2,{6,19}:*/OH,{11,13,18,20}:/*OH,10:*/!OH,17:*/!NH2 + {2,4,12}:*/NH2,{6,19}:*/OH,{11,13,18,20}:/*OH,10:*/!OH,17:*/!NH2 +------------------------------------------------------------------------------ Cat:antibiotics;EN:DihydroStreptmycin;MW:583.574 + <54,?5,3:O,4:/*_,5:/!OH^-48,5:/*OH^35,@1,\*,O,-24~wb,?6,-5:O,@2,*\,O,24~zb,?6, - {10,15}:*/OH,{11,16,18}:/*OH,9:/*!OH,12:*/NH!, - @17,*\^-18,NH,!,//NH,!,NH2,@19,*\,NH,!,//NH,!,NH2 + {10,15}:*/OH,{11,16,18}:/*OH,9:/*!OH,12:*/NH!, + @17,*\^-18,NH,!,//NH,!,NH2,@19,*\,NH,!,//NH,!,NH2 +------------------------------------------------------------------------------ Cat:antibiotics;EN:Fradiomycin;MW:614.644 + <30,?6,3:O,2:/*!NH2,1:*/OH,6:/*OH,5:*/NH2, - @4,*\,O,!~wb,?6,{-3,-5^15}:/*NH2,-2:*/OH^-15, - @-1,\*,O,-72~wb,?5,-4:O,-1:/*OH>vt,-3:*/!OH>vt, - @-2,\*^-24,O,-60~zb,?6,-5:O,-1:/*NH2,-2:*/OH,-3:/*OH,-4:/*!NH2>60 + @4,*\,O,!~wb,?6,{-3,-5^15}:/*NH2,-2:*/OH^-15, + @-1,\*,O,-72~wb,?5,-4:O,-1:/*OH>vt,-3:*/!OH>vt, + @-2,\*^-24,O,-60~zb,?6,-5:O,-1:/*NH2,-2:*/OH,-3:/*OH,-4:/*!NH2>60 +------------------------------------------------------------------------------ Cat:antibiotics;EN:Streptmycin;MW:581.574 + @@ -497,18 +497,18 @@ Cat:antibiotics;EN:Streptmycin;MW:581.574 Cat:antibiotics;EN:Neospiramycin;MW:698.9 + <-90,#1,60,60,-60,60,60,-60,60,60,-60,60,60,60,-60,60,-60,&1,##, - {12,14}=dl,2:O,1:/*_,5:/*OH,3://O,10:/*_,6:/*O!>vt, - @-6,\*,O,!~wb,?6`.7,-5:O,-3:/*N?!,-4:*/_, - @7,\*,O,0~wb,?6`.7,-5:O,-2:*/N?!,-1:/*OH,-4:*/_,-3:/*OH,@8,\*,!,!!,O + {12,14}=dl,2:O,1:/*_,5:/*OH,3://O,10:/*_,6:/*O!>vt, + @-6,\*,O,!~wb,?6`.7,-5:O,-3:/*N?!,-4:*/_, + @7,\*,O,0~wb,?6`.7,-5:O,-2:*/N?!,-1:/*OH,-4:*/_,-3:/*OH,@8,\*,!,!!,O +------------------------------------------------------------------------------ Cat:antibiotics;EN:Emamectine;MW:886.133 + <24,?6,6=?5,3=dl,9:O,2:*/OH,3:/_,6:/*OH^-60, - @5,#1.04,6,//O,-60,O,60~wb,60,-60,60~wf,60,-60,60,60,60,-60,60,##,&7, - {-1,-3,-7}=dl,(-11,-10)=?6[4],@-2,?6,-6=wf,-1=zb,-5=dl, - {-1,-6}:O,-3:*/_,@-2,\,*/_,!2, - 17:/_,19:/*_,@18,\,O,!,?6`.8,-1:O,-2:*/_,-4:*/O!, - @-3,\,O,60,?6`.8,-5:O,-4:*/_,-3:/*NH!,-2:*/O! + @5,#1.04,6,//O,-60,O,60~wb,60,-60,60~wf,60,-60,60,60,60,-60,60,##,&7, + {-1,-3,-7}=dl,(-11,-10)=?6[4],@-2,?6,-6=wf,-1=zb,-5=dl, + {-1,-6}:O,-3:*/_,@-2,\,*/_,!2, + 17:/_,19:/*_,@18,\,O,!,?6`.8,-1:O,-2:*/_,-4:*/O!, + @-3,\,O,60,?6`.8,-5:O,-4:*/_,-3:/*NH!,-2:*/O! +------------------------------------------------------------------------------ Cat:antibiotics;EN:Spinosad;MW:731.968 + @@ -560,7 +560,7 @@ Cat:antibiotics;EN:Chlortetracyclin;MW:478.88 Cat:antibiotics;EN:Oxytetracyclin;MW:460.434 + <30,Ph,{-4,-3,-3}=?6,{16,19}=dl,{10,18}://O,7:*/_^-35,11:*/OH, -{5,7~zf^35,13~wf^60,14,16}:/OH,15:*/N?!,17:/CONH2 + {5,7~zf^35,13~wf^60,14,16}:/OH,15:*/N?!,17:/CONH2 +------------------------------------------------------------------------------ Cat:antibiotics;EN:Tetracyclin;MW:444.435 + @@ -614,12 +614,12 @@ Cat:biological;EN:Limonin;MW:470.518 Cat:biological;EN:Cromolyn;MW:468.37 + <30,Ph,|,-1=?6,3=dl,1:O,4://O,2:/COOH, -@$2,\,O,!2,/OH,!2,O,60,Ph,|,-5=?6,3=dl,4:O,1://O,3:/COOH + @$2,\,O,!2,/OH,!2,O,60,Ph,|,-5=?6,3=dl,4:O,1://O,3:/COOH +------------------------------------------------------------------------------ Cat:biological;EN:Emetine;MW:480.649 + <30,Ph,{-4,-4}=?6,8:N,{1,6}:/O!,-2:/*!,{7^-60,12^-60}:/*H, -@-3,\,!~zb,<-60,|,?6,5=dl,2:NH,-6^-60:*/H,|,-2=?6,{2,4}=dl,{-2,-3}:/O! + @-3,\,!~zb,<-60,|,?6,5=dl,2:NH,-6^-60:*/H,|,-2=?6,{2,4}=dl,{-2,-3}:/O! +------------------------------------------------------------------------------ Cat:biological;EN:Acronycine;MW:321.376 + @@ -636,12 +636,12 @@ Cat:biological;EN:Febrifugine;MW:301.346 Cat:biological;EN:Mitomycine C;MW:334.332 + <30,?6,{3,6}=dl,{2,5}://O,1:/_,-4=?5,-3:N, -6:/NH2,,-3=?5,-2=?3,-1=wb,-2=wf,-1:NH,8:/*O!^35,@$9,\,!,O,60,//O,!,NH2 + 6:/NH2,,-3=?5,-2=?3,-1=wb,-2=wf,-1:NH,8:/*O!^35,@$9,\,!,O,60,//O,!,NH2 +------------------------------------------------------------------------------ Cat:biological;EN:Podophyllotoxin;MW:414.41 + <0,?5,{2,5}:O,-3=Ph2,-3=?6,-3=?5,-2:O,-1=wb,-3://O, -@10,\*,Ph,{-2,-3,-4}:/O!,13:/*OH,{11~wf^-60,12~zf^60}:/H + @10,\*,Ph,{-2,-3,-4}:/O!,13:/*OH,{11~wf^-60,12~zf^60}:/H +------------------------------------------------------------------------------ Cat:biological;EN:Warfarin;MW:308.333 + @@ -658,17 +658,17 @@ Cat:biological;EN:Baicalein;MW:270.24 Cat:biological;EN:Reserpine;MW:608.688 + <54,Ph,-4=?5,-2=?6,-4=?6,-3=?6,9=dl,11:N,7:NH,10:*/H^-60,{15^-60,16^60}:/*H, -@20,*\,O,!,//O,!,Ph,{-2,-3,-4}:/O!,{1,19~zf>rl}:/O!,18:*/COO!>lr + @20,*\,O,!,//O,!,Ph,{-2,-3,-4}:/O!,{1,19~zf>rl}:/O!,18:*/COO!>lr +------------------------------------------------------------------------------ Cat:biological;EN:Rotenone;MW:394.423 + <-60,?5,{-3,-2,-3,-4}=?6,{7,9,-2,-4}=dl,{3,17}=dr, -{2,13,16}:O,10://O,{11^-60,12^60}:*/H,{-2,-3}:/O!,@1,*\,/_,!! + {2,13,16}:O,10://O,{11^-60,12^60}:*/H,{-2,-3}:/O!,@1,*\,/_,!! +------------------------------------------------------------------------------ Cat:biological;EN:Pyrethrin I;MW:328.452 + <30,?3,{3^35~wf,3^-35~zf}:/_,@1,*\,!!,?!, -@2,\*,//O,!,O,-36~zb,|,?5,-2=dl,-1:/_,-3://O,@-2,\,!4,{-1,-3}=dl + @2,\*,//O,!,O,-36~zb,|,?5,-2=dl,-1:/_,-3://O,@-2,\,!4,{-1,-3}=dl +------------------------------------------------------------------------------ Cat:biological;EN:Oseltamivir;MW:312.40 + @@ -677,14 +677,14 @@ Cat:biological;EN:Oseltamivir;MW:312.40 Cat:biological;EN:Paclitaxel;MW:853.918 + ?6,5=dl,@3,#1,36,45,45,45,45,##,&5,-4=?6,-4=?4,-1=wb,-3=wf,-1:O, -4:??,6:/_,{3^-60,15}:*/OH,8:/*H^-60,9:*/_^60,10://O, -@1,\,O,!,//O,!,*/OH,!,/Ph,60~wf,NH,-60,//O,60,Ph, -@7,\*,O,-45,//O,60,Ph,11:*/OCO!>rl,12:/*OCO!^-15>lr + 4:??,6:/_,{3^-60,15}:*/OH,8:/*H^-60,9:*/_^60,10://O, + @1,\,O,!,//O,!,*/OH,!,/Ph,60~wf,NH,-60,//O,60,Ph, + @7,\*,O,-45,//O,60,Ph,11:*/OCO!>rl,12:/*OCO!^-15>lr +------------------------------------------------------------------------------ Cat:biological;EN:Mevastatin;MW:390.52 + <30,?6,2=dl,4:*/H^60,-4=?6,-4=dl,9:*/_, -@10,*\,!,60~wb,?6,6:O,-2://O,-4:/*OH,@5,\*,O,60,//O,!,*/_,!2 + @10,*\,!,60~wb,?6,6:O,-2://O,-4:/*OH,@5,\*,O,60,//O,!,*/_,!2 +------------------------------------------------------------------------------ Cat:biological;EN:Sesamine;MW:354.35 + @@ -698,7 +698,7 @@ Cat:biological;EN:Morphine;MW:285.343 Cat:biological;EN:Quinine;MW:324.424 + <30,Ph,3=Ph,7:N,6:/O!, -@10,\,*/OH,/H~zf^-60,!,|,?6,2:N,1:*/H^60,@4,*\,!!,@2,165~zf,60,&5~zb + @10,\,*/OH,/H~zf^-60,!,|,?6,2:N,1:*/H^60,@4,*\,!!,@2,165~zf,60,&5~zb +------------------------------------------------------------------------------ Cat:biological;EN:Atoropin;MW:289.375 + @@ -711,7 +711,7 @@ Cat:biological;EN:Colchicine;MW:399.443 Cat:biological;EN:Lycorine;MW:287.315 + <30,Ph,-4=?6,-2=?6,6=?5,(9,12)=?5[3],13=dl,8:N,{15,17}:O, -9:/*H^180,10:*/H^60,13:*/OH,14:/*OH + 9:/*H^180,10:*/H^60,13:*/OH,14:/*OH +------------------------------------------------------------------------------ Cat:biological;EN:Ibotenic acid;MW:158.113 + @@ -733,8 +733,8 @@ Cat:biological;EN:Psilocybin;MW:284.248 Cat:biological;EN:Tetrodotoxine;MW:319.27 + #1,<60,-90,60,-30`1.15,150,60,&1,@3,-135,60,-30`1.15,150,&4, -@10,\,O,60`1.33,60,&($3)~si_,@8,-15~si_,O,&12,##, -@9,45,-60,OH,1^120://NH,{5~zf^-15,7,9^-75,12,13~zf}:/OH,{2,6^180}:NH + @10,\,O,60`1.33,60,&($3)~si_,@8,-15~si_,O,&12,##, + @9,45,-60,OH,1^120://NH,{5~zf^-15,7,9^-75,12,13~zf}:/OH,{2,6^180}:NH +------------------------------------------------------------------------------ Cat:biological;EN:Aflatoxin B1;MW:312.27 + @@ -747,37 +747,37 @@ Cat:biological;EN:Aflatoxin B1;MW:312.27 Cat:antibiotics;EN:Vancomycin;MW:1449.25 + <-30,#1,!12,{1,3,12}=zf,7=wf,/H^-60,60,*/OH,60, - Ph,-4:/Cl,@-3,\,O,!,Ph,@-4,\,O,!,Ph,-1^15:/Cl,@-3,\,/*OH,*/H^-60,&1, - @7,&26,@$1,60,//O,60,NH,60,/*H,*/COOH^180,-60, - Ph,{-2,-4}:/OH,@-1,\,Ph,-5:/OH,@-2,&4,##, - {3^40,6,9,12}://O,{2,5,8,11}:NH,{1,4^180}:*/H,{7^-60,10^60,14^60}:/*H, - @10,*\^-60,60,//O,!,NH2,@13,*\,NH,!,//O,!,/??!,*/H^60,!~zf,NH,!, - @23,\,O,!,|,?6`.7,2:O,3^10:/!OH,{4,5}:/OH, - @-1,\,O,!,|,?6`.7,6:O,{3^35,5}:/_,3^-35:/NH2,4:/OH + Ph,-4:/Cl,@-3,\,O,!,Ph,@-4,\,O,!,Ph,-1^15:/Cl,@-3,\,/*OH,*/H^-60,&1, + @7,&26,@$1,60,//O,60,NH,60,/*H,*/COOH^180,-60, + Ph,{-2,-4}:/OH,@-1,\,Ph,-5:/OH,@-2,&4,##, + {3^40,6,9,12}://O,{2,5,8,11}:NH,{1,4^180}:*/H,{7^-60,10^60,14^60}:/*H, + @10,*\^-60,60,//O,!,NH2,@13,*\,NH,!,//O,!,/??!,*/H^60,!~zf,NH,!, + @23,\,O,!,|,?6`.7,2:O,3^10:/!OH,{4,5}:/OH, + @-1,\,O,!,|,?6`.7,6:O,{3^35,5}:/_,3^-35:/NH2,4:/OH +------------------------------------------------------------------------------ Cat:biological;EN:Maitotoxin;MW:3425.86 + <55.8,?6,-4=?7 ,{-4,-3,-3,-3}=?6,@-3,\,!3,?6,{-4,-3,-3,-3}=?6,@-3,\,?6,-3=?6, - @-3,\,!3,60,<-30,?6,-3=?6,@-3,30,<30,?6,{-3,-3}=?6,-3=?7,{-4,-3,-3}=?6, - @-2,\,?6,-3=?6,-3=?7,{-3,-3}=?6,-3=?8,-3=dl,{-5,-3,-3,-3}=?6, - {5,7,15,16,23,24,32,40,41,48,49,58,59,72,73,82,83,90,91,99, - 100,107,113,114,122,123,130,131,140,141,148,149}:O, - {1^60,2,26,28,29,51,54,61,63,68,75^60,78,109}:*/OH, - {11,20,35,45,52,55,65,69,86}:/*OH,{47,57,71}:/*H^60, - {3,8,13,17,21,33,38,42,56,70,84,92,101,106,111,128,138,142,146,150}:/*H^-60, - {4,14,22,34,39,43,81,89,98,102,116,121,125,129,133}:*/H^60, - {6,46,50,53,60,67,74}:*/H^-60, - {9,18,85,93,112,139,143,147}:*/_`1^60, - {80,88,97,115,120,124}:/*_`1^-60,108:*/_`1^-60, - @$6,\,|,!11,60~dr,-60,60,OH,2:/*OH,{7,10}:*/OH,{1,3}:*/_,{8~zf,11~dm,12}:/_, - @6,\,O,30,SOO,30,"O{Na}", - @$36,-45~zf,O,30,SOO,30,"O{Na}", - @$150,\,|,!7,{1,2}:/*OH,4:*/_,5:/*_,7=dl + @-3,\,!3,60,<-30,?6,-3=?6,@-3,30,<30,?6,{-3,-3}=?6,-3=?7,{-4,-3,-3}=?6, + @-2,\,?6,-3=?6,-3=?7,{-3,-3}=?6,-3=?8,-3=dl,{-5,-3,-3,-3}=?6, + {5,7,15,16,23,24,32,40,41,48,49,58,59,72,73,82,83,90,91,99, + 100,107,113,114,122,123,130,131,140,141,148,149}:O, + {1^60,2,26,28,29,51,54,61,63,68,75^60,78,109}:*/OH, + {11,20,35,45,52,55,65,69,86}:/*OH,{47,57,71}:/*H^60, + {3,8,13,17,21,33,38,42,56,70,84,92,101,106,111,128,138,142,146,150}:/*H^-60, + {4,14,22,34,39,43,81,89,98,102,116,121,125,129,133}:*/H^60, + {6,46,50,53,60,67,74}:*/H^-60, + {9,18,85,93,112,139,143,147}:*/_`1^60, + {80,88,97,115,120,124}:/*_`1^-60,108:*/_`1^-60, + @$6,\,|,!11,60~dr,-60,60,OH,2:/*OH,{7,10}:*/OH,{1,3}:*/_,{8~zf,11~dm,12}:/_, + @6,\,O,30,SOO,30,"O{Na}", + @$36,-45~zf,O,30,SOO,30,"O{Na}", + @$150,\,|,!7,{1,2}:/*OH,4:*/_,5:/*_,7=dl +------------------------------------------------------------------------------ Cat:biological;EN:Okadaic acid;MW:805.00 + <30,?6,@4,?6,@-4,\,!3,<-12,?5,@-3,<-12,?6,-3=?6,@-3,*\,!3, - ?6,@-4,?6,@6,\,!,/*Me^-40,*/OH^20,!,//O,!1,OH, - 3=wb,11=dl,15=dr,17=wf,19=wf,38=wb,{5,7,16,24,25,33,42}:O, - 32:*/H^60,10:/Me,{12,31}:*/_,27://_,37:/*_,28:/OH,{3,29}:/*OH + ?6,@-4,?6,@6,\,!,/*Me^-40,*/OH^20,!,//O,!1,OH, + 3=wb,11=dl,15=dr,17=wf,19=wf,38=wb,{5,7,16,24,25,33,42}:O, + 32:*/H^60,10:/Me,{12,31}:*/_,27://_,37:/*_,28:/OH,{3,29}:/*OH +------------------------------------------------------------------------------ diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf index 581833d27b7..b6bc26a3480 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_exa_soc.mf @@ -1,17 +1,15 @@ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Molecular Coding Format for mcf_example.tex by Akira Yamaji 2021.04.18 +% Molecular Coding Format for mcf_example.tex by Akira Yamaji 2021.05.05 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -input mcf2graph.mf; %%% it must be version 4.63 -message "* mcf_exa_soc 2021.04.18"; +input mcf2graph.mf; %%% it must be version 4.64 +message "* mcf_exa_soc 2021.05.05"; message ""; %------------------------------------------------------------------------------ fsize:=(35mm,24mm); max_blength:=4.5mm; +tag1:="J"; tag2:="C"; tag3:="fm"; tag4:="mw"; tag5:="EN"; tag6:="MW"; %------------------------------------------------------------------------------ %%%%sw_fframe:=1; -tag1:="J"; tag2:="C"; tag3:="fm"; tag4:="mw"; tag5:="EN"; tag6:="MW"; -%%%% atomfont:="uhvb8r"; -%%%% atomfont:="cmtt8"; %%%% outputformat:="png"; hppp:=vppp:=0.1; outputtemplate:="%j-%3c.png"; %%ext(defaultfont:="uhvr8r"; defaultscale:=.6; label.lrt(inf_EN,(-2bp,1.5bp));) %------------------------------------------------------------------------------ @@ -38,9 +36,10 @@ beginfont("f+:mcf_data_base","t:n","v:5") % 'f+'=keep file open if check(mc)=0: MC(scantokens(mc)) fi % 'v:5' select No.5 endfont %****************************************************************************** +%%%%forever: % All for i=6 upto 155: % No.6 - No.155 beginfont("f+:mcf_data_base","v:*") % 'f+'=keep file open - if check(mc)=0: MC(scantokens(mc)) fi % 'v:0' no selection + if check(mc)=0: MC(scantokens(mc)) fi % 'v:*' no selection endfont % exitif f_EOF=1; % exit if file end endfor diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf Binary files differindex e29e57298f9..3307bc7cd89 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.pdf diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex index b6ea7191160..c0874a757c4 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_example.tex @@ -1,5 +1,5 @@ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Example of MCF typeset by LaTeX mcf_examples.tex by A.Yamaji 2021.04.18 +% Example of MCF typeset by LaTeX mcf_examples.tex by A.Yamaji 2021.05.05 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \documentclass[a4paper]{article} \usepackage{graphicx} @@ -8,7 +8,7 @@ \edef\jobname{mcf_exa_soc}% \usepackage{mcf_setup} %-------------------------------- -\pdfpkresolution=1200 +%%%%\pdfpkresolution=1200 %-------------------------------- %%%%\edef\f@ext{pk}% \edef\f@ext{mps}% @@ -46,9 +46,9 @@ \openin\@auxf=\jobname-info.aux% \CONT@true% \loop% -\read\@auxf to \@info% -\ifeof\@auxf\CONT@false\else\@sfor\@info{\tag@var\@list}% - %------------------------------------------------------------ +\read\@auxf to \info% +\ifeof\@auxf\CONT@false\else% + \infotovar{\info}% \begin{picture}(3750,3350)% \put(20,3000){\footnotesize\bf \the\f@num:\EN}% \put(20,2750){\labelM MW:\mw { / }FM:\fm}% diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf index f2f874ee859..3fff89f92e7 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_man_soc.mf @@ -1,9 +1,9 @@ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Molecular Coding Format file for mcf_manual.tex by Akira.Yamaji 2021.04.18 +% Molecular Coding Format file for mcf_manual.tex by Akira.Yamaji 2021.05.05 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -input mcf2graph.mf; %% it must be version 4.63 +input mcf2graph.mf; %% it must be version 4.64 % ** use data base file 'mcf_data_base.mcf' -message "mcf_man_soc 2021.04.18"; message ""; +message "mcf_man_soc 2021.05.05"; message ""; %------------------------------------------------------------------------ sw_mframe:=0; sw_expand:=0; @@ -1312,28 +1312,28 @@ endfont %*************************************************************************** sw_calc:=1; ext(defaultfont:="uhvr8r"; defaultscale:=.75; - label.urt("NO = "&decimal(char_num),(0.01w,0.60h)); - label.urt("EN = "&inf_EN ,(0.01w,0.57h)); - label.urt("MW = "&inf_MW ,(0.01w,0.54h)); - label.urt("mw = "&cal_MW ,(0.01w,0.51h)); - label.urt("fm = "&cal_FM ,(0.01w,0.48h)); - label.urt("w = "&decimal(w) ,(0.01w,0.45h)); - label.urt("h = "&decimal(h) ,(0.01w,0.42h)); - label.urt("n = "&decimal(n) ,(0.01w,0.39h)); + label.urt("NO = "&decimal(char_num),(0.01w,0.55h)); + label.urt("EN = "&inf_EN ,(0.01w,0.52h)); + label.urt("MW(D) = "&inf_MW ,(0.01w,0.49h)); + label.urt("MW(C) = "&cal_MW ,(0.01w,0.46h)); + label.urt("FM(C) = "&cal_FM ,(0.01w,0.43h)); + label.urt("w = "&decimal(w) ,(0.01w,0.40h)); + label.urt("h = "&decimal(h) ,(0.01w,0.37h)); + label.urt("n = "&decimal(n) ,(0.01w,0.34h)); label.urt("ratio_thickness_bond = "&decimal(ratio_thickness_bond), - (0.01w,0.36h)); + (0.01w,0.31h)); label.urt("ratio_atom_bond = "&decimal(ratio_atom_bond), - (0.01w,0.33h)); + (0.01w,0.28h)); label.urt("ratio_bondgap_bond = "&decimal(ratio_bondgap_bond), - (0.01w,0.30h)); + (0.01w,0.25h)); label.urt("ratio_chain_ring = "&decimal(ratio_chain_ring), - (0.01w,0.27h)); - label.urt("sw_fframe = "&decimal(sw_fframe),(0.01w,0.24h)); - label.urt("sw_aframe = "&decimal(sw_aframe),(0.01w,0.21h)); - label.urt("sw_trimming = "&decimal(sw_trimming),(0.01w,0.18h)); - label.urt("mc1= "&mc1,(0.01w,0.12h)); - label.urt("mc2= "&mc2,(0.01w,0.09h)); - label.urt("mc3= "&mc3,(0.01w,0.06h)); + (0.01w,0.22h)); + label.urt("sw_fframe = "&decimal(sw_fframe),(0.01w,0.19h)); + label.urt("sw_aframe = "&decimal(sw_aframe),(0.01w,0.16h)); + label.urt("sw_trimming = "&decimal(sw_trimming),(0.01w,0.13h)); + label.urt("mc1= "&mc1,(0.01w,0.09h)); + label.urt("mc2= "&mc2,(0.01w,0.06h)); + label.urt("mc3= "&mc3,(0.01w,0.03h)); ) %*************************************************************************** beginfont("EN:Ampicillin","MW:349.405", @@ -1341,8 +1341,9 @@ beginfont("EN:Ampicillin","MW:349.405", ": 3^45:/*H,1://O^15,5:/*COOH^-18,6:??,", ": @4,*\^15,NH,!,//O,!,/*NH2,!,Ph" ) - fsize:=(72mm,110mm); - blength:=7mm; + sw_output:=None; + fsize:=(72mm,85mm); + blength:=6mm; if check(mc)=0: MCat(0.5,0.95)(scantokens(mc)) fi endfont %*************************************************************************** @@ -1350,8 +1351,9 @@ beginfont("EN:Cholesterol","MW:386.65", ": <30,?6,{-4,-2}=?6,-4=?5,7=dl, ", ": 10:/*H^180,11:/*H^-60,17:/*H^-54, ", ": 1:*/OH,{4,12}:*/_^60,@-1,18,/*_,-60,!3,?!") - fsize:=(72mm,110mm); - blength:=7mm; + sw_output:=None; + fsize:=(72mm,85mm); + blength:=5.5mm; if check(mc)=0: MCat(0.5,0.95)(scantokens(mc)) fi endfont %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf Binary files differindex 34896448cd3..a952e91f000 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.pdf diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex index f96a5357cf9..e5842f9eac4 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_manual.tex @@ -1,5 +1,5 @@ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Molecular Coding Format manual by Akira Yamaji 2021.04.18 +% Molecular Coding Format manual by Akira Yamaji 2021.05.05 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \documentclass[a4paper]{article} \usepackage[pdftex]{graphicx} @@ -12,8 +12,8 @@ %---------------------------------------------------------------------------- %%%%\pdfpkresolution=1200 %---------------------------------------------------------------------------- -\edef\fext{pk}% **** for proof print (fast) -%%%%\edef\fext{mps}% **** for final print (it takes long time) +%%%%\edef\fext{pk}% **** for proof print (fast) +\edef\fext{mps}% **** for final print (it takes long time) %---------------------------------------------------------------------------- %%%%\edef\fext{png}% %%%%\edef\fext{svg}% @@ -54,9 +54,9 @@ }% %--------------------------------------------------------------------------- \def\put@char{% - \begin{picture}(75,130)% - \put(0,120){\bf [\NO]\EN}% - \put(5,115){\small\tt FM:\fm{ }MW:\mw}% + \begin{picture}(75,100)% + \put(0,95){\bf [\NO]\EN}% + \put(5,90){\small\tt FM:\fm{ }MW:\mw}% \put(5,0){\MCFgraph}% \end{picture}% }% @@ -1470,7 +1470,6 @@ endfont \subsection{Metafont/Metapost souce file} \index{mcf2graph.mf}% \index{sw\_output}% -\index{sw\_file\_open}% \index{tag}% \index{var}% \begin{verbatim} @@ -1608,9 +1607,13 @@ Cat:biological;EN:Linoleic acid;MW:280.45 \index{mi}% \index{w}% \index{h}% +\index{Info1}% +\index{Info2}% +\index{Info\_t}% \begin{verbatim} sw_output:=Info1; % tag1:var1;tag2:var2 sw_output:=Info2; % tag1;tag2 var1;var2 + sw_output:=Info_t; % tag1:var1;tag2:var2 / output 'temp-info.aux' \end{verbatim} \paragraph{(Command line)} \begin{verbatim} @@ -1671,6 +1674,7 @@ h : font height \noindent% \newpage \subsection{Metafont aux file output} +\index{Mfont}% \paragraph{(Insert option parameter setting)} \begin{verbatim} sw_output:=Mfont; @@ -1731,11 +1735,69 @@ if check(mc)=0: MC(scantokens(mc)) fi endfont \end{verbatim} %------------------------------------------------------------------------ +\noindent% +\newpage +\subsection{MCF aux file output(1)} +\paragraph{(Insert option parameter setting)} +\index{Mcode}% +\begin{verbatim} +sw_output:=Mcode; +\end{verbatim} +\paragraph{(Command line)} +\index{Mcode\_t}% +\begin{verbatim} + >mpost -s ahlength=8 FILENAME (sw_output=Mcode) +\end{verbatim} +\paragraph{(Output)} +\begin{verbatim} +file name = 'mcf_exa_soc-001-Adenine-mc.aux' + +<30,?6,3=?5,{1,3,5,9}=dl,{2,6,9}:N,5:/NH2,7:NH +\end{verbatim} +%------------------------------------------------------------------------ +\subsection{MCF aux file output(2)} +\paragraph{(Insert option parameter setting)} +\begin{verbatim} +beginfont("f:mcf_data_base","t:EN","v:Adenine") + sw_output:=Mcode_t; +endfont +\end{verbatim} +%----------------------------------------------------------------------- +\paragraph{(Lualatex example)} +%----------------------------------------------------------------------- +\begin{verbatim} +%----------------------------------------------------------------------- +\begin{mplibcode} + beginfont("f:mcf_data_base","t:EN","v:Vancomycin") + sw_output:=Mcode_t; %%%% output temp-mc.aux %%%% + endfont; +\end{mplibcode} +%----------------------------------------------------------------------- +\verbatiminput{temp-mc.aux} +%----------------------------------------------------------------------- +\end{verbatim} +%----------------------------------------------------------------------- +\paragraph{(Output)} +%----------------------------------------------------------------------- +\begin{verbatim} +file name = 'temp-mc.aux' + +<-30,#1,!12,{1,3,12}=zf,7=wf,/H^-60,60,*/OH,60, + Ph,-4:/Cl,@-3,\,O,!,Ph,@-4,\,O,!,Ph,-1^15:/Cl,@-3,\,/*OH,*/H^-60,&1, + @7,&26,@$1,60,//O,60,NH,60,/*H,*/COOH^180,-60, + Ph,{-2,-4}:/OH,@-1,\,Ph,-5:/OH,@-2,&4,##, + {3^40,6,9,12}://O,{2,5,8,11}:NH,{1,4^180}:*/H,{7^-60,10^60,14^60}:/*H, + @10,*\^-60,60,//O,!,NH2,@13,*\,NH,!,//O,!,/??!,*/H^60,!~zf,NH,!, + @23,\,O,!,|,?6`.7,2:O,3^10:/!OH,{4,5}:/OH, + @-1,\,O,!,|,?6`.7,6:O,{3^35,5}:/_,3^-35:/NH2,4:/OH +\end{verbatim} +%------------------------------------------------------------------------ \newpage \noindent% \subsection{Report output} \paragraph{(Insert option parameter setting)} \index{sw\_output}% +\index{Report}% \begin{verbatim} sw_output:=Report; \end{verbatim} @@ -1798,6 +1860,8 @@ endfont \subsection{MOL file output} \paragraph{(Insert option parameter setting)} \index{sw\_output}% +\index{MOL2k}% +\index{MOL3k}% \begin{verbatim} sw_output:=MOL2k; % MOL(V2000) sw_output:=MOL3k; % MOL(V3000) @@ -1848,6 +1912,7 @@ M END %---------------------------------------------------------------------------- \newpage \subsection{LuaTeX file example} +\index{None}% %############################################################################ \begin{verbatim} \documentclass{article} diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf Binary files differindex 8c6aaac13af..92420313d82 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.pdf diff --git a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex index 71f5f269094..93ac0e0f1f5 100644 --- a/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex +++ b/Master/texmf-dist/doc/metapost/mcf2graph/mcf_mplib_exa.tex @@ -1,18 +1,19 @@ %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% Example of MCF typest with LuaLaTeX(luamplib) by A.Yamaji 2021.04.18 +% Example of MCF typest with LuaLaTeX(luamplib) by A.Yamaji 2021.05.05 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% ** mcf2graph.mf must be version 4.63 +% ** mcf2graph.mf must be version 4.64 % ** use mcf_data_base.mcf \documentclass{article} %------------------------------------------------------------------------------ \usepackage{luamplib}% \usepackage[T1]{fontenc}% -\usepackage{textcomp}% +\usepackage{textcomp,verbatim,mcf_setup}% \mplibcodeinherit{enable}% \mplibverbatim{enable}% \mplibnumbersystem{double}% \everymplib{% if unknown Ph1: input mcf2graph.mf; fi + tag1:="J"; tag2:="C"; tag3:="fm"; tag4:="mw"; tag5:="EN"; tag6:="MW"; sw_output:=None; sw_fframe:=4; max_blength:=4.5mm; @@ -46,56 +47,52 @@ \subsection{Chlorophyll a} \noindent% \begin{verbatim} -beginfont("f:mcf_data_base","t:EN","v:Chlorophyll a") +beginfont("f:mcf_data_base","t:EN","v:Chlorophyll a", + ":,||,{4,11,17,23}:red,27:green") %%%% change color of atoms %%%% fsize:=(100mm,45mm); if check(mc)=0: MC(scantokens(mc)) fi - ext( - defaultscale:=0.8; - label.lrt("FM(C): "&cal_FM,(0,h-5mm)); - label.lrt("MW(C): "&cal_MW,(0,h-9mm)); - label.lrt("MW(D): "&inf_MW,(0,h-13mm)); - ) + ext(defaultscale:=0.8; + label.lrt("FM(C): "&cal_FM,(0,h-5mm)); + label.lrt("MW(C): "&cal_MW,(0,h-9mm)); + label.lrt("MW(D): "&inf_MW,(0,h-13mm));) endfont \end{verbatim} %------------------------------------------------------------------------------------ \begin{mplibcode} -beginfont("f:mcf_data_base","t:EN","v:Chlorophyll a") +beginfont("f:mcf_data_base","t:EN","v:Chlorophyll a", + ":,||,{4,11,17,23}:red,27:green") %%%% change color of atoms %%%% fsize:=(100mm,45mm); if check(mc)=0: MC(scantokens(mc)) fi - ext( - defaultscale:=0.8; - label.lrt("FM(C): "&cal_FM,(0,h-5mm)); - label.lrt("MW(C): "&cal_MW,(0,h-9mm)); - label.lrt("MW(D): "&inf_MW,(0,h-13mm)); - ) + ext(defaultscale:=0.8; + label.lrt("FM(C): "&cal_FM,(0,h-5mm)); + label.lrt("MW(C): "&cal_MW,(0,h-9mm)); + label.lrt("MW(D): "&inf_MW,(0,h-13mm));) endfont \end{mplibcode} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -\subsection{Okadaic acid} +\subsection{Dinophysistoxin-1} \noindent% \begin{verbatim} -beginfont("f:mcf_data_base","t:EN","v:Okadaic acid") +beginfont("f:mcf_data_base","t:EN","v:Okadaic acid","EN:Dinophysistoxin-1", + "MW:819",":,@38,*\,-1=red") %%%% add methyl group (color red) %%%% fsize:=(150mm,35mm); if check(mc)=0: MC(scantokens(mc)) fi - ext( - defaultscale:=0.8; - label.lrt("FM(C): "&cal_FM,(0,h-5mm)); - label.lrt("MW(C): "&cal_MW,(0,h-9mm)); - label.lrt("MW(D): "&inf_MW,(0,h-13mm)); - ) + ext(defaultscale:=0.8; + label.lrt("FM(C): "&cal_FM,(0,h-5mm)); + label.lrt("MW(C): "&cal_MW,(0,h-9mm)); + label.lrt("MW(D): "&inf_MW,(0,h-13mm));) endfont; \end{verbatim} %---------------------------------------------------------------------------- \begin{mplibcode} -beginfont("f:mcf_data_base","t:EN","v:Okadaic acid") +beginfont("f:mcf_data_base","t:EN","v:Okadaic acid","EN:Dinophysistoxin-1", + "MW:819",":,@38,*\,-1=red") %%%% add methyl group (color red) %%%% fsize:=(150mm,35mm); if check(mc)=0: MC(scantokens(mc)) fi - ext( - defaultscale:=0.8; - label.lrt("FM(C): "&cal_FM,(0,h-5mm)); - label.lrt("MW(C): "&cal_MW,(0,h-9mm)); - label.lrt("MW(D): "&inf_MW,(0,h-13mm)); - ) + ext(defaultscale:=0.8; + label.lrt("FM(C): "&cal_FM,(0,h-5mm)); + label.lrt("MW(C): "&cal_MW,(0,h-9mm)); + label.lrt("MW(D): "&inf_MW,(0,h-13mm));) endfont; \end{mplibcode} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% @@ -128,12 +125,10 @@ beginfont("EN:Erythromycin","MW:733.93", %------------------------------------------------------------------ fsize:=(120mm,30mm); if check(mc)=0: MC(scantokens(mc)) fi - ext( - defaultscale:=0.8; - label.lrt("FM(C): "&cal_FM,(0,h-5mm)); - label.lrt("MW(C): "&cal_MW,(0,h-9mm)); - label.lrt("MW(D): "&inf_MW,(0,h-13mm)); - ) + ext(defaultscale:=0.8; + label.lrt("FM(C): "&cal_FM,(0,h-5mm)); + label.lrt("MW(C): "&cal_MW,(0,h-9mm)); + label.lrt("MW(D): "&inf_MW,(0,h-13mm));) endfont; \end{mplibcode} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% @@ -162,12 +157,10 @@ beginfont("EN:Paclitaxel","MW:853.918", %--------------------------------------------------------------------- fsize:=(120mm,30mm); if check(mc)=0: MC(scantokens(mc)) fi - ext( - defaultscale:=0.8; - label.lrt("FM(C): "&cal_FM,(0,h-5mm)); - label.lrt("MW(C): "&cal_MW,(0,h-9mm)); - label.lrt("MW(D): "&inf_MW,(0,h-13mm)); - ) + ext(defaultscale:=0.8; + label.lrt("FM(C): "&cal_FM,(0,h-5mm)); + label.lrt("MW(C): "&cal_MW,(0,h-9mm)); + label.lrt("MW(D): "&inf_MW,(0,h-13mm));) endfont \end{mplibcode} %---------------------------------------------------------------------------- @@ -190,86 +183,70 @@ beginfont("EN:Kekulene","MW:600.7", ": {8,12,14,16,18,22,24,26,28,32,34,36,38,42,44,46,48,52,54,56,58}=dl ") fsize:=(120mm,25mm); if check(mc)=0: MC(scantokens(mc)) fi - ext( - defaultscale:=0.8; - label.lrt("FM(C): "&cal_FM,(0,h-5mm)); - label.lrt("MW(C): "&cal_MW,(0,h-9mm)); - label.lrt("MW(D): "&inf_MW,(0,h-13mm)); - ) + ext(defaultscale:=0.8; + label.lrt("FM(C): "&cal_FM,(0,h-5mm)); + label.lrt("MW(C): "&cal_MW,(0,h-9mm)); + label.lrt("MW(D): "&inf_MW,(0,h-13mm));) endfont \end{mplibcode} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \newpage %---------------------------------------------------------------------------- -\subsection{Vancomycin} +\subsection{Maitotoxin} \noindent% -%---------------------------------------------------------------------------- +%-------------------------------------------------------------------------------- \begin{verbatim} -% extract from molecular data base file 'mcf_data_base.mcf' -EN:Vancomycin;MW:1449.25 -+ -<-30,#1,!12,{1,3,12}=zf,7=wf,/H^-60,60,*/OH,60, - Ph,-4:/Cl,@-3,\,O,!,Ph,@-4,\,O,!,Ph,-1^15:/Cl,@-3,\,/*OH,*/H^-60,&1, - @7,&26,@$1,60,//O,60,NH,60,/*H,*/COOH^180,-60, - Ph,{-2,-4}:/OH,@-1,\,Ph,-5:/OH,@-2,&4,##, - {3^40,6,9,12}://O,{2,5,8,11}:NH,{1,4^180}:*/H,{7^-60,10^60,14^60}:/*H, - @10,*\^-60,60,//O,!,NH2,@13,*\,NH,!,//O,!,/??!,*/H^60,!~zf,NH,!, - @23,\,O,!,|,?6`.7,2:O,3^10:/!OH,{4,5}:/OH, - @-1,\,O,!,|,?6`.7,6:O,{3^35,5}:/_,3^-35:/NH2,4:/OH -+------------------------------------------------------------------------------ -\end{verbatim} -%---------------------------------------------------------------------------- +%-------------------------------------------------------------------------------- \begin{mplibcode} -beginfont("f:mcf_data_base","t:EN","v:Vancomycin") -fsize:=(150mm,40mm); - if check(mc)=0: MC(scantokens(mc)) fi - ext( - defaultscale:=0.8; - label.lrt("FM(C): "&cal_FM,(0,h-4mm)); - label.lrt("MW(C): "&cal_MW,(0,h-8mm)); - label.lrt("MW(D): "&inf_MW,(0,h-12mm)); - ) -endfont; + beginfont("f:mcf_data_base","t:EN","v:Maitotoxin") + sw_output:=Mcode_t; %%%% output temp-mc.aux %%%% + endfont; + beginfont("f:mcf_data_base","t:EN","v:Maitotoxin") + sw_output:=Info_t; %%%% output temp-info.aux %%%% + if check(mc)=0: MC(scantokens(mc)) fi + endfont +\end{mplibcode} +\verbatiminput{temp-mc.aux} %%%% input temp-mc.aux %%%% +\begin{mplibcode} + beginfont("f:mcf_data_base","t:EN","v:Maitotoxin") + fsize:=(120mm,60mm); fmargin:=(0,3mm); sw_fframe:=1; + if check(mc)=0: MC(scantokens(mc)) fi %%%% output font %%%% + endfont \end{mplibcode} -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -\subsection{Maitotoxin} -\noindent% %-------------------------------------------------------------------------------- -\begin{verbatim} -% extract from molecular data base file 'mcf_data_base.mcf' -EN:Maitotoxin;MW:3425.86 -+ -<55.8,?6,-4=?7 ,{-4,-3,-3,-3}=?6,@-3,\,!3,?6,{-4,-3,-3,-3}=?6,@-3,\,?6,-3=?6, - @-3,\,!3,60,<-30,?6,-3=?6,@-3,30,<30,?6,{-3,-3}=?6,-3=?7,{-4,-3,-3}=?6, - @-2,\,?6,-3=?6,-3=?7,{-3,-3}=?6,-3=?8,-3=dl,{-5,-3,-3,-3}=?6, - {5,7,15,16,23,24,32,40,41,48,49,58,59,72,73,82,83,90,91,99, - 100,107,113,114,122,123,130,131,140,141,148,149}:O, - {1^60,2,26,28,29,51,54,61,63,68,75^60,78,109}:*/OH, - {11,20,35,45,52,55,65,69,86}:/*OH,{47,57,71}:/*H^60, - {3,8,13,17,21,33,38,42,56,70,84,92,101,106,111,128,138,142,146,150}:/*H^-60, - {4,14,22,34,39,43,81,89,98,102,116,121,125,129,133}:*/H^60, - {6,46,50,53,60,67,74}:*/H^-60, - {9,18,85,93,112,139,143,147}:*/_`1^60, - {80,88,97,115,120,124}:/*_`1^-60,108:*/_`1^-60, - @$6,\,|,!11,60~dr,-60,60,OH,2:/*OH,{7,10}:*/OH,{1,3}:*/_,{8~zf,11~dm,12}:/_, - @6,\,O,30,SOO,30,"O{Na}", - @$36,-45~zf,O,30,SOO,30,"O{Na}", - @$150,\,|,!7,{1,2}:/*OH,4:*/_,5:/*_,7=dl -+------------------------------------------------------------------------------ +\newread\auxfile% +\openin\auxfile=temp-info.aux %%%% input temp-info.aux %%%% +\read\auxfile to \info% +\infotovar{\info} %%%% info to variables %%%% +\closein\auxfile% +{\tt ** EN:\EN \quad MW(C):\MW \quad MW(D):\mw \quad FM(C):\fm}% +%-------------------------------------------------------------------------------- \end{verbatim} %-------------------------------------------------------------------------------- \begin{mplibcode} -beginfont("f:mcf_data_base","t:EN","v:Maitotoxin") - fsize:=(170mm,55mm); - if check(mc)=0: MC(scantokens(mc)) fi - ext( - defaultscale:=0.8; - label.lrt("FM(C): "&cal_FM,(0,.8h-5mm)); - label.lrt("MW(C): "&cal_MW,(0,.8h-9mm)); - label.lrt("MW(D): "&inf_MW,(0,.8h-13mm)); - ) -endfont + beginfont("f:mcf_data_base","t:EN","v:Maitotoxin") + sw_output:=Mcode_t; %%%% output temp-mc.aux %%%% + endfont; + beginfont("f:mcf_data_base","t:EN","v:Maitotoxin") + sw_output:=Info_t; %%%% output temp-info.aux %%%% + if check(mc)=0: MC(scantokens(mc)) fi + endfont +\end{mplibcode} +\verbatiminput{temp-mc.aux} %%%% input temp-mc.aux %%%% +\begin{mplibcode} + beginfont("f:mcf_data_base","t:EN","v:Maitotoxin") + fsize:=(120mm,60mm); fmargin:=(0,3mm); sw_fframe:=1; + if check(mc)=0: MC(scantokens(mc)) fi %%%% output font %%%% + endfont \end{mplibcode} +%-------------------------------------------------------------------------------- +\newread\auxfile% +\openin\auxfile=temp-info.aux %%%% input temp-info.aux %%%% +\read\auxfile to \info% +\infotovar{\info} %%%% info to variables %%%% +\closein\auxfile% +{\tt ** EN:\EN \quad MW(C):\MW \quad MW(D):\mw \quad FM(C):\fm}% +%-------------------------------------------------------------------------------- %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \newpage \subsection{TCA cycle} @@ -278,20 +255,20 @@ endfont beginfont("EN:TCA cycle") fsize:=(160mm,75mm); max_blength:=5mm; -%------------------------------------------------------------------------ +%-------------------------------------------------------------------------------- COOH:='(//O,!,OH); HOCO:='(OH,!,//O,); -MCat(0.33, 1)(<30,HOCO,!,//O,!2,COOH) -MCat(0.66, 1)(<30,HOCO,!4,COOH,@-4`1,\,COOH,4:/OH^-165) -MCat(1, 1)(<30,HOCO,!2,!~dr,!,COOH,@-4`1,\,COOH) -MCat(1, 0.55)(<30,HOCO,!4,COOH,@-4,\`1,COOH) -MCat(1, 0.05)(<30,HOCO,!3,//O,!,COOH,@-4,\`1,COOH) -MCat(0.66,0.05)(<30,HOCO,!3,//O,!,COOH) -MCat(0.33,0.05)(<30,HOCO,!3,//O,!,"{S-CoA}") -MCat(0, 0.05)(<30,HOCO,!3,COOH) -MCat(0, 0.55)(<30,HOCO,!,!~dr,!,COOH) -MCat(0, 1)(<30,HOCO,!3,COOH,3:/OH) -%------------------------------------------------------------------------- +MCat(0.33, 1)(<30,HOCO,!,//O,!2,COOH) % Oxaloacetate +MCat(0.66, 1)(<30,HOCO,!4,COOH,@-4`1,\,COOH,4:/OH^-165) % Citrate +MCat(1, 1)(<30,HOCO,!2,!~dr,!,COOH,@-4`1,\,COOH) % cis-Aconitate +MCat(1, 0.55)(<30,HOCO,!4,COOH,@-4,\`1,COOH) % Isocitrate +MCat(1, 0.05)(<30,HOCO,!3,//O,!,COOH,@-4,\`1,COOH) % Oxalosuccinate +MCat(0.66,0.05)(<30,HOCO,!3,//O,!,COOH) % alfa-Ketoglutarate +MCat(0.33,0.05)(<30,HOCO,!3,//O,!,"{S-CoA}") % Succinyl-CoA +MCat(0, 0.05)(<30,HOCO,!3,COOH) % Succinate +MCat(0, 0.55)(<30,HOCO,!,!~dr,!,COOH) % Fumarate +MCat(0, 1)(<30,HOCO,!3,COOH,3:/OH) % L-Malate +%-------------------------------------------------------------------------------- ext( defaultfont:="uhvr8r"; defaultscale:=0.75; @@ -346,16 +323,16 @@ fsize:=(160mm,75mm); max_blength:=5mm; COOH:='(//O,!,OH); HOCO:='(OH,!,//O,); -MCat(0.33, 1)(<30,HOCO,!,//O,!2,COOH) -MCat(0.66, 1)(<30,HOCO,!4,COOH,@-4`1,\,COOH,4:/OH^-165) -MCat(1, 1)(<30,HOCO,!2,!~dr,!,COOH,@-4`1,\,COOH) -MCat(1, 0.55)(<30,HOCO,!4,COOH,@-4,\`1,COOH) -MCat(1, 0.05)(<30,HOCO,!3,//O,!,COOH,@-4,\`1,COOH) -MCat(0.66,0.05)(<30,HOCO,!3,//O,!,COOH) -MCat(0.33,0.05)(<30,HOCO,!3,//O,!,"{S-CoA}") -MCat(0, 0.05)(<30,HOCO,!3,COOH) -MCat(0, 0.55)(<30,HOCO,!,!~dr,!,COOH) -MCat(0, 1)(<30,HOCO,!3,COOH,3:/OH) +MCat(0.33, 1)(<30,HOCO,!,//O,!2,COOH) % Oxaloacetate +MCat(0.66, 1)(<30,HOCO,!4,COOH,@-4`1,\,COOH,4:/OH^-165) % Citrate +MCat(1, 1)(<30,HOCO,!2,!~dr,!,COOH,@-4`1,\,COOH) % cis-Aconitate +MCat(1, 0.55)(<30,HOCO,!4,COOH,@-4,\`1,COOH) % Isocitrate +MCat(1, 0.05)(<30,HOCO,!3,//O,!,COOH,@-4,\`1,COOH) % Oxalosuccinate +MCat(0.66,0.05)(<30,HOCO,!3,//O,!,COOH) % alfa-Ketoglutarate +MCat(0.33,0.05)(<30,HOCO,!3,//O,!,"{S-CoA}") % Succinyl-CoA +MCat(0, 0.05)(<30,HOCO,!3,COOH) % Succinate +MCat(0, 0.55)(<30,HOCO,!,!~dr,!,COOH) % Fumarate +MCat(0, 1)(<30,HOCO,!3,COOH,3:/OH) % L-Malate ext( defaultfont:="uhvr8r"; defaultscale:=0.75; |