xymtx406.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004, 2005, 2009 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx405.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004, 2005, 2009 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx404.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004, 2005, 2009 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx403.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004,2005 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx402.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx401.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx400.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx300.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx201.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998,2001 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% renamed and revised: xymtex2.doc Copyright (C) 1993, 1996, 1998 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% renamed and revised: xymtex1.doc Copyright (C) 1993, 1996 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% `XyMTeX' is a macro package for drawing chemical structural formulas. (1) Setting up The XyMTeX system has been frozen with ZIP. Set up according to the software situation of your computer. The following is only one example. Let the frozen package (xymtx406.zip or xymtx406-CTAN.zip) be placed in the c:\temp directory, where the package is melt with an appropriate software for melting. Thereby, the directory <\xymtex> is automatically created as the subdirectory of the c:\temp directory; and the following hierarchy of directories and files is generated. (The xymtex directory in the deposit uploaded to CTAN does not contain \jobdoc subdirectories for the sake of lighter load. For full document directories, visit the original deposit of the latest version at http://xymtex.com/ (Shonan Institute of Chemoinformatics and Mathematical Chemistry)). c---\temp---\xymtex --- xymtex.sty, xymtexps.sty | | | hetaromh.sty, hetarom.sty, ccycle.sty, | chemstr.sty, carom.sty, lowcycl.sty, aliphat.sty, | hcycle.sty, locant.sty, polymers.sty, chemist.sty | methylen.sty, fusering.sty, | sizeredc.sty, steroid.sty, | lewisstruc.sty, chemtimes.sty | (dtx files) | |---\xymtxps---xymtx-ps.sty, chmst-ps.sty | (dtx files) | |--\drvdvi---drv files | |--\doc101--- xymtex.pdf | |--\doc200----\jobdoc --- xymtx200.tex, xymtx200.dvi, | | xymyl.tex, xymadd.tex | | (other files for the document preparation) | |--xymtx200.dvi (on-line document) | |--xymtx200.pdf (on-line document) | | |--\doc300----\jobdoc --- xymtx300.tex, xymtx300.dvi, | | (other files for the document preparation) | |--xymtx300.dvi (on-line document) | |--xymtx300.pdf (on-line document) | |--\doc401----\olddoc400 xymtx400.tex, xymtx400.ps, etc. | | | |--\jobdoc401 xymtx401.tex, xymtx401.ps, etc. | | | |--xymtx401.pdf (on-line document) | |--\doc402403----\jobdoc --- xymtx402403.tex, xymtx402403.dvi, | | (other files for the document preparation) | | | |--xymtx402403.pdf (on-line) | |--\doc404-------\jobdoc --- xymtx404.tex, xymtx404.dvi, | | (other files for the document preparation) | | | |--xymtx404.pdf (on-line) | |--\doc405406----\jobdoc405406 --- xymtx405A.tex, xymtx405A.dvi, | | xymtx405A.ps, | | xymtx405406B.tex, xymtx405406B.dvi, xymtx405406B.ps, | | xymtx405406C.tex, xymtx405406C.dvi, xymtx405406C.ps | | | |--xymtx405A.pdf (on-line document) | |--xymtx405406B.pdf (on-line document) | |--xymtx405406C.pdf (on-line document) | |---xymtx406.doc (this document) | |---xymtx406.jpn (on-line document in Japanese) | |---readm406.doc (notes in English) | |---readm406.jpn (notes in Japanese) | Each of the package (sty) files in the \xymtex directory contains the macro codes of XymTeX commands. The specification of XyMTeX commands and examples of using these commands are included in the xymtex.dvi file of the \doc... directory. Among the three tex files for Version 4.05 (xymtx405A.tex, xymtx405B.tex, and xymtx405C.tex), the latter two have been rewritten to explain the items added by XyMTeX Version 4.06 (harpoons etc.), so as to be renamed into xymtx405406B.tex, and xymtx405406B.tex. They have sotored in the \doc405406\jobdoc405406 directory and have used to generate xymtx405406B.dvi and xymtx405406C.dvi, which have been converted into the corresponding PostScript files (xymtx405406B.ps and xymtx405406C.ps). These PostScript files have been further converted into PDF files (xymtx405406B.pdf and xymtx405406C.pd ), which can be browsed with Adobe Acrobat. ========================for old documentations================================== The xymtx200.dvi file is a dvi file that is a manual for utilizing XyMTeX (about 100 pages). The processed dvi file can be obtained in the same directory of this distribution. It can be printed with an appropriate printer driver (dviout, or others) and can be displayed with an appropriate previewer (dviout, etc.). The corresponding PDF file (xymtx200.pdf) is also available. -- The xymtx300.tex is the main file of the manuscript for creating the xymtx300.dvi. The other tex files in the \doc300 directory are input files which are read by the main file. The corresponding PDF file (xymtx300.pdf) is also available. -- The xymtx401.tex in the \doc401\jobdoc401 directory is the main file of the manuscript for creating the xymtx401.dvi. This dvi file has bee furthern converted into the corresponding PostScript file (xymtx401.ps), which should be browsed by using an appropriate PostScript view. This Postscript file has been further converted into a PDF file (named xymtx401.pdf), which can be browsed with Adobe Acrobat. Caution: Don't browse xymtx401.dvi by a dvi-ware such as dviout! The other tex files in the \doc401\jobdoc401 directory are input files which are read by the main file. -- The xymtx402403.tex in the \doc402403\jobdoc402 directory is the main file of the manuscript for creating the xymtx402403.dvi. This dvi file has bee furthern converted into the corresponding PostScript file (xymtx402403.ps), which should be browsed by using an appropriate PostScript view. This Postscript file has been further converted into a PDF file (named xymtx402403.pdf), which can be browsed with Adobe Acrobat. Caution: Don't browse xymtx402403.dvi by a dvi-ware such as dviout! The other tex files in the \doc402403\jobdoc402 directory are input files which are read by the main file. -- The xymtx404.tex in the \doc404\jobdoc directory is the main file of the manuscript for creating the xymtx404.dvi. This dvi file has been further converted into the corresponding PostScript file (xymtx404.ps), which should be browsed by using an appropriate PostScript view. This Postscript file has been further converted into a PDF file (named xymtx404.pdf), which can be browsed with Adobe Acrobat. Caution: Don't browse xymtx404.dvi by a dvi-ware such as dviout! The other tex files in the \doc404\jobdoc directory are input files which are read by the main file. -- The three tex files, xymtx405A.tex, xymtx405B.tex, and xymtx405C.tex in the \doc405\jobdoc405 directory is the main files of the manuscript for creating the corresponding xymtx405A.dvi, xymtx405B.dvi, and xymtx405C.dvi. Thise dvi files (not included) have been further converted into the corresponding PostScript files (xymtx405A.ps etc.), which should be browsed by using an appropriate PostScript view. This Postscript files have been further converted into PDF files (named xymtx405A.pdf etc.), which can be browsed with Adobe Acrobat. ==================================================================== (2) Designating a serach path Do this task according to the situtation of your computer. The path searching tool (kpathsea) supported by usual TeX distributions has already decided several input directories (named ``tex'' or others). Hence, you should only place the resulting ``xymtex'' directry generated from xymtx406.zip in such an appropriate directory named ``tex'' or others (e.g., c:\usr\local\share\texmf\tex\latex). (3) Writing your manuscript Each command of XyMTeX can be used if you add the name of the corresponding style file to the option list at the top of your manuscript file, e.g. \documentclass{article} \usepackage{epic,hetarom,hetaromh,xymtx-ps} ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ where the underlined names are XyMTeX package files containing your requisite commands. If all of the XyMTeX commands are required, the short-cut declaration (recommended because of advanced capacities of personal computers): For using the LaTeX picture environment and epic: \documentclass{article} \usepackage{xymtex} For using under Postscript mode due to PSTricks techiques: \documentclass{article} \usepackage{xymtxps} can be used for simplicity. The include packages (chemist.sty, chmst-ps.sty, chemtimes.sty) should be loaded separately after xymtex.sty or xymtexps.sty is loaded. (4) Running LaTeX2e or pLaTeX2e You should use XyMTeX commands within LaTeX to creat a dvi file. (5) Conversion of the dvi file into a PostScript file (by e.g., dvipsk) (6) Conversion of the PostScript file into a PDF file (by e.g., Adobe Distiller) %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%(END)