From e0c6872cf40896c7be36b11dcc744620f10adf1d Mon Sep 17 00:00:00 2001
From: Norbert Preining <norbert@preining.info>
Date: Mon, 2 Sep 2019 13:46:59 +0900
Subject: Initial commit

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+% Copyright 2013 by Sarah Mäusle and Till Tantau
+%
+% This file may be distributed and/or modified
+%
+% 1. under the LaTeX Project Public License and/or
+% 2. under the GNU Free Documentation License.
+%
+% See the file doc/generic/pgf/licenses/LICENSE for more details.
+
+
+\section{Graph Drawing Layouts: Phylogenetic Trees}
+\label{section-library-graphdrawing-phylogenetics}
+
+{\noindent {\emph{by Sarah Mäusle and Till Tantau}}}
+
+\ifluatex
+\else
+    This section of the manual can only be typeset using Lua\TeX.
+    \expandafter\endinput
+\fi
+
+\tikzset{/graph drawing/phylogenetic inner node/.style={
+    /tikz/.cd,
+    draw, circle, inner sep=0pt, minimum size=5pt}
+}
+\tikzset{/graph drawing/phylogenetic edge/.style={
+    /tikz/.cd,
+    thick, rounded corners,edge node={node[auto,font=\tiny, inner  sep=2pt]{}}}
+}
+
+\includeluadocumentationof{pgf.gd.phylogenetics.library}
+\includeluadocumentationof{pgf.gd.phylogenetics.PhylogeneticTree}
+
+
+\subsection{Generating a Phylogenetic Tree}
+
+... \todosp{I guess something should be added here, right?}
+
+When a phylogenetic tree is generated, new nodes and edges get created. In
+order to give you a chance at styling them, the following styles are executed:
+
+\begin{stylekey}{/graph drawing/phylogenetic inner node}
+    The style is added every newly created inner node. In this manual, this key
+    is set to:
+    %
+\begin{codeexample}[code only]
+\pgfgdset{phylogenetic inner node/.style={
+    /tikz/.cd, draw, circle, inner sep=0pt, minimum size=5pt
+  }
+}
+\end{codeexample}
+    %
+\end{stylekey}
+
+\begin{stylekey}{/graph drawing/phylogenetic edge=\meta{length}}
+    The style is added every newly created phylogenetic edge. The \meta{length}
+    will be set to the computed evolutionary length of the edge. In this
+    manual, this key is set to:
+    %
+\begin{codeexample}[code only]
+\pgfgdset{phylogenetic edge/.style={
+    /tikz/.cd, thick, rounded corners
+  }
+}
+\end{codeexample}
+    %
+\end{stylekey}
+
+\includeluadocumentationof{pgf.gd.phylogenetics.AuthorDefinedPhylogeny}
+\includeluadocumentationof{pgf.gd.phylogenetics.SokalMichener1958}
+\includeluadocumentationof{pgf.gd.phylogenetics.BalancedMinimumEvolution}
+\includeluadocumentationof{pgf.gd.phylogenetics.BalancedNearestNeighbourInterchange}
+
+
+\subsection{Laying out the Phylogram}
+
+\includeluadocumentationof{pgf.gd.phylogenetics.Maeusle2012}
+
+
+%%% Local Variables:
+%%% mode: latex
+%%% TeX-master: "pgfmanual-pdftex-version"
+%%% End:
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