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-rw-r--r--graphics/mcf2graph/mcf_manual.tex24
1 files changed, 12 insertions, 12 deletions
diff --git a/graphics/mcf2graph/mcf_manual.tex b/graphics/mcf2graph/mcf_manual.tex
index 0dd00f333a..01d25e170c 100644
--- a/graphics/mcf2graph/mcf_manual.tex
+++ b/graphics/mcf2graph/mcf_manual.tex
@@ -1,5 +1,5 @@
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Molecular Coding Format manual by Akira Yamaji 2022.02.27
+% Molecular Coding Format manual by Akira Yamaji 2022.03.13
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[a4paper]{article}
\usepackage[pdftex]{graphicx}
@@ -1384,8 +1384,8 @@ endfigm
\subsection{Luciferin}
\index{check()}%
\begin{verbatim}
-(use data base file 'mcf_data_base')
-beginfigm("f:mcf_data_base",
+(use library file 'mcf_library')
+beginfigm("f:mcf_library",
"t:EN","v:Luciferin")
fsize:=(50mm,15mm);
if check(mc)=0: MC(scantokens(mc)) fi
@@ -1519,7 +1519,7 @@ beginfigm("EN:Cholesterol","MW:386.65", >information
if check(mc)=0: MC(scantokens(mc)) fi > mc=mc1 - mc4
endfigm >
%------------------------------------------------------------------------------
-beginfigm("f:mcf_data_base.mcf","t:EN","v:Adenine") > from mcf_data_base.mcf
+beginfigm("f:mcf_library.mcf","t:EN","v:Adenine") > from mcf_library.mcf
if check(mc)=0: MC(scantokens(mc)) fi > select EN="Adenine"
endfigm >
%------------------------------------------------------------------------------
@@ -1536,8 +1536,8 @@ beginfigm("t:n","v+:4") > v+:4 = select No.4
endfigm >
%------------------------------------------------------------------------------
forever:
-%%%%%%%%%% beginfigm("f:mcf_data_base","v+:*") > select all
- beginfigm("f:mcf_data_base","t:EXA","v+:1") > 'v+:1'= select EXA=1
+%%%%%%%%%% beginfigm("f:mcf_library","v+:*") > select all
+ beginfigm("f:mcf_library","t:EXA","v+:1") > 'v+:1'= select EXA=1
if f_EOF=0: if check(mc)=0: MC(scantokens(mc)) fi fi > keep file open
endfigm >
exitif f_EOF=1; > exit if file end
@@ -1548,10 +1548,10 @@ bye
%------------------------------------------------------------------------
\noindent%
\newpage
-\subsection{Molecular data base file}
+\subsection{Molecular library file}
\begin{verbatim}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% molecular data base file mcf_data_base.mcf by Akira Yamaji 2021.11.14
+% molecular library file mcf_library.mcf by Akira Yamaji 2022.03.13
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% tag1:var1;tag2:var2;tag3:var3 .....
% first character of line "%" comment out
@@ -1616,7 +1616,7 @@ Cat:biological;EN:Stearic acid;MW:284.48
%--------------------------------------------------------------
% query()
%
-% "f:filename" : input file name (default "mcf_data_base.mcf")
+% "f:filename" : input file name (default "mcf_library.mcf")
% "o:filename" : output file name (default "temp.mcf")
% "s:sort-key" : sort by sort-key
%
@@ -1627,7 +1627,7 @@ Cat:biological;EN:Stearic acid;MW:284.48
% filter 3 : MW<=295
%--------------------------------------------------------------
query("s:EN",
-%%%%% "f:mcf_data_base.mcf","o:temp.mcf","s:EN",
+%%%%% "f:mcf_library.mcf","o:temp.mcf","s:EN",
"Cat=biological","MW>=285","MW<=295");
%--------------------------------------------------------------
forever:
@@ -1767,9 +1767,9 @@ sw_output=Mcode %% file name = 'temp-mc.aux'
<30,?6,3=?5,{1,3,5,9}=dl,{2,6,9}:N,5:/NH2,7:NH
\end{verbatim}
-\paragraph{(Output data-base file)}
+\paragraph{(Output library file)}
\begin{verbatim}
-sw_output=Info+Mcode %% file name = 'jobname-data.aux'
+sw_output=Info+Mcode %% file name = 'jobname-lib.aux'
(result)
Cat:biological;EN:Adenine;MW:135.13;EXA:1